RNA–Protein interactions for RNA: ENST00000598553.1

VRK3-214, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 595 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-214ENST00000598553 BCL2L12Q9HB09 334 aa14.31□□□□□ -0.12
VRK3-214ENST00000598553 LAMB4A4D0S4 1761 aa14.31□□□□□ -0.12
VRK3-214ENST00000598553 DLEC1Q9Y238 1755 aa14.31□□□□□ -0.12
VRK3-214ENST00000598553 COL15A1P39059 1388 aa14.31□□□□□ -0.12
VRK3-214ENST00000598553 HEG1Q9ULI3 1381 aa14.31□□□□□ -0.12
VRK3-214ENST00000598553 COL11A2P13942 1736 aaPredicted RBP14.29□□□□□ -0.12
VRK3-214ENST00000598553 USPL1Q5W0Q7 1092 aa14.29□□□□□ -0.12
VRK3-214ENST00000598553 ZNF790Q6PG37 636 aa14.29□□□□□ -0.12
VRK3-214ENST00000598553 GOLGB1Q14789 3259 aaKnown RBP14.29□□□□□ -0.12
VRK3-214ENST00000598553 CACNA1SQ13698 1873 aa14.29□□□□□ -0.12
VRK3-214ENST00000598553 A0A0G2JLW4 131 aa14.28□□□□□ -0.12
VRK3-214ENST00000598553 CANXP27824 592 aaKnown RBP14.28□□□□□ -0.12
VRK3-214ENST00000598553 PIP4K2AP48426 406 aaPredicted RBP14.28□□□□□ -0.12
VRK3-214ENST00000598553 CARMIL3Q8ND23 1372 aa14.28□□□□□ -0.12
VRK3-214ENST00000598553 POLRMTO00411 1230 aaKnown RBP14.27□□□□□ -0.13
VRK3-214ENST00000598553 DPEP1P16444 411 aa14.27□□□□□ -0.13
VRK3-214ENST00000598553 KCNA3P22001 575 aa14.27□□□□□ -0.13
VRK3-214ENST00000598553 TEFQ10587 303 aa14.27□□□□□ -0.13
VRK3-214ENST00000598553 DDX10Q13206 875 aaKnown RBP14.27□□□□□ -0.13
VRK3-214ENST00000598553 NLGN1Q8N2Q7 840 aa14.27□□□□□ -0.13
VRK3-214ENST00000598553 PLEKHF1Q96S99 279 aa14.27□□□□□ -0.13
VRK3-214ENST00000598553 ADCY9O60503 1353 aa14.26□□□□□ -0.13
VRK3-214ENST00000598553 TM4SF1P30408 202 aa14.26□□□□□ -0.13
VRK3-214ENST00000598553 NFIXQ14938 502 aa14.26□□□□□ -0.13
VRK3-214ENST00000598553 THUMPD2Q9BTF0 503 aaKnown RBP14.26□□□□□ -0.13
VRK3-214ENST00000598553 NUDCQ9Y266 331 aa14.26□□□□□ -0.13
VRK3-214ENST00000598553 SBF1O95248 1867 aa14.26□□□□□ -0.13
VRK3-214ENST00000598553 ATP10DQ9P241 1426 aa14.25□□□□□ -0.13
VRK3-214ENST00000598553 FCHSD2O94868 740 aa14.25□□□□□ -0.13
VRK3-214ENST00000598553 A1BGP04217 495 aa14.25□□□□□ -0.13
VRK3-214ENST00000598553 TTC5Q8N0Z6 440 aa14.25□□□□□ -0.13
VRK3-214ENST00000598553 VSIG10Q8N0Z9 540 aa14.25□□□□□ -0.13
VRK3-214ENST00000598553 MIS18AQ9NYP9 233 aa14.25□□□□□ -0.13
VRK3-214ENST00000598553 CCDC88AQ3V6T2 1871 aa14.25□□□□□ -0.13
VRK3-214ENST00000598553 BTBD11A6QL63 1104 aa14.24□□□□□ -0.13
VRK3-214ENST00000598553 CHRNA5P30532 468 aa14.24□□□□□ -0.13
VRK3-214ENST00000598553 EIF5P55010 431 aaKnown RBP14.24□□□□□ -0.13
VRK3-214ENST00000598553 NARFQ9UHQ1 456 aa14.24□□□□□ -0.13
VRK3-214ENST00000598553 USP16Q9Y5T5 823 aa14.24□□□□□ -0.13
VRK3-214ENST00000598553 PARP3Q9Y6F1 533 aa14.24□□□□□ -0.13
VRK3-214ENST00000598553 GRIN3BO60391 1043 aa14.22□□□□□ -0.13
VRK3-214ENST00000598553 CCDC24Q8N4L8 307 aa14.22□□□□□ -0.13
VRK3-214ENST00000598553 TBC1D2BQ9UPU7 963 aa14.22□□□□□ -0.13
VRK3-214ENST00000598553 BCS1LQ9Y276 419 aa14.22□□□□□ -0.13
VRK3-214ENST00000598553 ZNF330Q9Y3S2 320 aaPredicted RBP14.22□□□□□ -0.13
VRK3-214ENST00000598553 ZPR1O75312 459 aa14.21□□□□□ -0.13
VRK3-214ENST00000598553 TGFB2P61812 414 aa14.21□□□□□ -0.13
VRK3-214ENST00000598553 TBC1D9BQ66K14 1250 aa14.21□□□□□ -0.13
VRK3-214ENST00000598553 BICDL1Q6ZP65 573 aa14.21□□□□□ -0.13
VRK3-214ENST00000598553 FMNL2Q96PY5 1086 aa14.21□□□□□ -0.13
VRK3-214ENST00000598553 NUP98P52948 1817 aa14.2□□□□□ -0.14
VRK3-214ENST00000598553 NBPF26B4DH59 902 aa14.2□□□□□ -0.14
VRK3-214ENST00000598553 NBPF10Q6P3W6 841 aaKnown RBP14.2□□□□□ -0.14
VRK3-214ENST00000598553 NBPF15Q8N660 670 aa14.2□□□□□ -0.14
VRK3-214ENST00000598553 CAMTA2O94983 1202 aa14.19□□□□□ -0.14
VRK3-214ENST00000598553 ZNF526Q8TF50 670 aaPredicted RBP14.19□□□□□ -0.14
VRK3-214ENST00000598553 TNRC6CQ9HCJ0 1690 aaKnown RBP14.19□□□□□ -0.14
VRK3-214ENST00000598553 STARD3NLO95772 234 aa14.18□□□□□ -0.14
VRK3-214ENST00000598553 SERPINB2P05120 415 aa14.18□□□□□ -0.14
VRK3-214ENST00000598553 NFE2L2Q16236 605 aa14.18□□□□□ -0.14
VRK3-214ENST00000598553 RTF1Q92541 710 aaKnown RBP14.18□□□□□ -0.14
VRK3-214ENST00000598553 ARFGEF2Q9Y6D5 1785 aa14.18□□□□□ -0.14
VRK3-214ENST00000598553 SLX4Q8IY92 1834 aa14.18□□□□□ -0.14
VRK3-214ENST00000598553 IL6STP40189 918 aaPredicted RBP14.17□□□□□ -0.14
VRK3-214ENST00000598553 CCDC146Q8IYE0 955 aa14.17□□□□□ -0.14
VRK3-214ENST00000598553 RRP7AQ9Y3A4 280 aaKnown RBP14.17□□□□□ -0.14
VRK3-214ENST00000598553 TIAM2Q8IVF5 1701 aa14.17□□□□□ -0.14
VRK3-214ENST00000598553 HTATSF1O43719 755 aaKnown RBP14.16□□□□□ -0.14
VRK3-214ENST00000598553 PRELPP51888 382 aa14.16□□□□□ -0.14
VRK3-214ENST00000598553 RALBP1Q15311 655 aa14.16□□□□□ -0.14
VRK3-214ENST00000598553 TAF7Q15545 349 aaPredicted RBP14.16□□□□□ -0.14
VRK3-214ENST00000598553 FER1L6Q2WGJ9 1857 aa14.16□□□□□ -0.14
VRK3-214ENST00000598553 MYBBP1AQ9BQG0 1328 aaKnown RBP14.15□□□□□ -0.14
VRK3-214ENST00000598553 SNRPA1P09661 255 aaKnown RBP14.14□□□□□ -0.15
VRK3-214ENST00000598553 C1QTNF8P60827 252 aa14.14□□□□□ -0.15
VRK3-214ENST00000598553 EIF4A1P60842 406 aaKnown RBP14.14□□□□□ -0.15
VRK3-214ENST00000598553 RASSF7Q02833 373 aa14.14□□□□□ -0.15
VRK3-214ENST00000598553 PRR5LQ6MZQ0 368 aa14.14□□□□□ -0.15
VRK3-214ENST00000598553 ARHGAP27Q6ZUM4 889 aa14.14□□□□□ -0.15
VRK3-214ENST00000598553 DZIP3Q86Y13 1208 aaKnown RBP14.14□□□□□ -0.15
VRK3-214ENST00000598553 TEX13AQ9BXU3 409 aaPredicted RBP14.14□□□□□ -0.15
VRK3-214ENST00000598553 GIGYF1O75420 1035 aaPredicted RBP14.13□□□□□ -0.15
VRK3-214ENST00000598553 PIM2Q9P1W9 311 aa14.13□□□□□ -0.15
VRK3-214ENST00000598553 DICER1Q9UPY3 1922 aaKnown RBP14.13□□□□□ -0.15
VRK3-214ENST00000598553 A0A087WZG4 1122 aa14.12□□□□□ -0.15
VRK3-214ENST00000598553 TMPOP42166 694 aaKnown RBP14.12□□□□□ -0.15
VRK3-214ENST00000598553 HLFQ16534 295 aa14.12□□□□□ -0.15
VRK3-214ENST00000598553 CCDC184Q52MB2 194 aa14.12□□□□□ -0.15
VRK3-214ENST00000598553 PRKRIP1Q9H875 184 aaPredicted RBP14.12□□□□□ -0.15
VRK3-214ENST00000598553 MAPK8IP3Q9UPT6 1336 aa14.12□□□□□ -0.15
VRK3-214ENST00000598553 ANKRD36CQ5JPF3 1778 aa14.11□□□□□ -0.15
VRK3-214ENST00000598553 RIPK4P57078 832 aa14.11□□□□□ -0.15
VRK3-214ENST00000598553 KRT24Q2M2I5 525 aa14.11□□□□□ -0.15
VRK3-214ENST00000598553 DALRD3Q5D0E6 543 aaKnown RBP14.11□□□□□ -0.15
VRK3-214ENST00000598553 C2CD5Q86YS7 1000 aa14.11□□□□□ -0.15
VRK3-214ENST00000598553 LAMB2P55268 1798 aa14.1□□□□□ -0.15
VRK3-214ENST00000598553 KIF3CO14782 793 aa14.1□□□□□ -0.15
VRK3-214ENST00000598553 C9orf131Q5VYM1 1079 aa14.1□□□□□ -0.15
VRK3-214ENST00000598553 TTLL7Q6ZT98 887 aa14.1□□□□□ -0.15
VRK3-214ENST00000598553 NGEFQ8N5V2 710 aa14.1□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms