RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 FLIIQ13045 1269 aa19.36■□□□□ 0.69
TRIM28-209ENST00000597423 POTEAQ6S8J7 498 aa19.36■□□□□ 0.69
TRIM28-209ENST00000597423 CLUAP1Q96AJ1 413 aa19.36■□□□□ 0.69
TRIM28-209ENST00000597423 FKBP5Q13451 457 aaPredicted RBP19.35■□□□□ 0.69
TRIM28-209ENST00000597423 FAM182BQ5T319 152 aa19.35■□□□□ 0.69
TRIM28-209ENST00000597423 C20orf194Q5TEA3 1177 aa19.35■□□□□ 0.69
TRIM28-209ENST00000597423 ILDR1Q86SU0 546 aaPredicted RBP19.35■□□□□ 0.69
TRIM28-209ENST00000597423 PANK1Q8TE04 598 aa19.35■□□□□ 0.69
TRIM28-209ENST00000597423 CRBNQ96SW2 442 aa19.35■□□□□ 0.69
TRIM28-209ENST00000597423 TOGARAM1Q9Y4F4 1720 aa19.34■□□□□ 0.69
TRIM28-209ENST00000597423 LOC102724428A0A0B4J2F2 783 aa19.34■□□□□ 0.69
TRIM28-209ENST00000597423 SIK1P57059 783 aa19.34■□□□□ 0.69
TRIM28-209ENST00000597423 ATP6V1AP38606 617 aa19.33■□□□□ 0.68
TRIM28-209ENST00000597423 G2E3Q7L622 706 aa19.33■□□□□ 0.68
TRIM28-209ENST00000597423 NPM2Q86SE8 214 aaKnown RBP19.33■□□□□ 0.68
TRIM28-209ENST00000597423 DNAJC10Q8IXB1 793 aa19.33■□□□□ 0.68
TRIM28-209ENST00000597423 PPP4R2Q9NY27 417 aa19.33■□□□□ 0.68
TRIM28-209ENST00000597423 DDX19BQ9UMR2 479 aa19.33■□□□□ 0.68
TRIM28-209ENST00000597423 KCPQ6ZWJ8 1503 aa19.33■□□□□ 0.68
TRIM28-209ENST00000597423 PALLDQ8WX93 1383 aa19.32■□□□□ 0.68
TRIM28-209ENST00000597423 CCT4P50991 539 aaKnown RBP19.32■□□□□ 0.68
TRIM28-209ENST00000597423 MVPQ14764 893 aaKnown RBP19.32■□□□□ 0.68
TRIM28-209ENST00000597423 EXOC6Q8TAG9 804 aa19.32■□□□□ 0.68
TRIM28-209ENST00000597423 COG6Q9Y2V7 657 aa19.32■□□□□ 0.68
TRIM28-209ENST00000597423 KAT6BQ8WYB5 2073 aa19.32■□□□□ 0.68
TRIM28-209ENST00000597423 ITGB4P16144 1822 aa19.32■□□□□ 0.68
TRIM28-209ENST00000597423 DOT1LQ8TEK3 1739 aa19.31■□□□□ 0.68
TRIM28-209ENST00000597423 MYL6BP14649 208 aa19.31■□□□□ 0.68
TRIM28-209ENST00000597423 PDIA6Q15084 440 aa19.31■□□□□ 0.68
TRIM28-209ENST00000597423 ITPRIPQ8IWB1 547 aa19.31■□□□□ 0.68
TRIM28-209ENST00000597423 PAPPAQ13219 1627 aa19.3■□□□□ 0.68
TRIM28-209ENST00000597423 PHAXQ9H814 394 aaKnown RBP19.3■□□□□ 0.68
TRIM28-209ENST00000597423 ABCC4O15439 1325 aa19.29■□□□□ 0.68
TRIM28-209ENST00000597423 A1BGP04217 495 aa19.29■□□□□ 0.68
TRIM28-209ENST00000597423 CYP19A1P11511 503 aaPredicted RBP19.29■□□□□ 0.68
TRIM28-209ENST00000597423 RLBP1P12271 317 aa19.29■□□□□ 0.68
TRIM28-209ENST00000597423 INTS3Q68E01 1043 aaKnown RBP19.29■□□□□ 0.68
TRIM28-209ENST00000597423 KSR2Q6VAB6 950 aa19.29■□□□□ 0.68
TRIM28-209ENST00000597423 TMEM57Q8N5G2 664 aa19.29■□□□□ 0.68
TRIM28-209ENST00000597423 ANXA1P04083 346 aa19.28■□□□□ 0.68
TRIM28-209ENST00000597423 PROSER3Q2NL68 480 aa19.28■□□□□ 0.68
TRIM28-209ENST00000597423 SLC4A10Q6U841 1118 aa19.28■□□□□ 0.68
TRIM28-209ENST00000597423 COPS6Q7L5N1 327 aa19.28■□□□□ 0.68
TRIM28-209ENST00000597423 UBR2Q8IWV8 1755 aa19.27■□□□□ 0.68
TRIM28-209ENST00000597423 TRIM37O94972 964 aa19.27■□□□□ 0.68
TRIM28-209ENST00000597423 AIMP1Q12904 312 aaKnown RBP19.27■□□□□ 0.68
TRIM28-209ENST00000597423 ANKRD13DQ6ZTN6 518 aa19.27■□□□□ 0.68
TRIM28-209ENST00000597423 RIC3Q7Z5B4 369 aa19.27■□□□□ 0.68
TRIM28-209ENST00000597423 XAGE3Q8WTP9 111 aa19.27■□□□□ 0.68
TRIM28-209ENST00000597423 SLC4A9Q96Q91 983 aa19.27■□□□□ 0.68
TRIM28-209ENST00000597423 TNNQ9UQP3 1299 aa19.27■□□□□ 0.68
TRIM28-209ENST00000597423 CACNA1FO60840 1977 aa19.26■□□□□ 0.67
TRIM28-209ENST00000597423 PI4KAP2A4QPH2 592 aa19.26■□□□□ 0.67
TRIM28-209ENST00000597423 NBPF26B4DH59 902 aa19.26■□□□□ 0.67
TRIM28-209ENST00000597423 NBPF14Q5TI25 921 aa19.26■□□□□ 0.67
TRIM28-209ENST00000597423 NBPF10Q6P3W6 841 aaKnown RBP19.26■□□□□ 0.67
TRIM28-209ENST00000597423 NBPF15Q8N660 670 aa19.26■□□□□ 0.67
TRIM28-209ENST00000597423 PI4KAP1Q8N8J0 262 aa19.26■□□□□ 0.67
TRIM28-209ENST00000597423 DNAAF4Q8WXU2 420 aa19.26■□□□□ 0.67
TRIM28-209ENST00000597423 RGS12O14924 1447 aa19.25■□□□□ 0.67
TRIM28-209ENST00000597423 NEXNQ0ZGT2 675 aa19.25■□□□□ 0.67
TRIM28-209ENST00000597423 CCDC87Q9NVE4 849 aa19.25■□□□□ 0.67
TRIM28-209ENST00000597423 CCNL1Q9UK58 526 aaPredicted RBP19.25■□□□□ 0.67
TRIM28-209ENST00000597423 F6X3S4 739 aa19.24■□□□□ 0.67
TRIM28-209ENST00000597423 IL6STP40189 918 aaPredicted RBP19.24■□□□□ 0.67
TRIM28-209ENST00000597423 SLC27A3Q5K4L6 730 aa19.24■□□□□ 0.67
TRIM28-209ENST00000597423 KIF6Q6ZMV9 814 aa19.24■□□□□ 0.67
TRIM28-209ENST00000597423 PTF1AQ7RTS3 328 aa19.24■□□□□ 0.67
TRIM28-209ENST00000597423 PLBD2Q8NHP8 589 aa19.24■□□□□ 0.67
TRIM28-209ENST00000597423 CCDC136Q96JN2 1154 aa19.24■□□□□ 0.67
TRIM28-209ENST00000597423 HDAC5Q9UQL6 1122 aa19.24■□□□□ 0.67
TRIM28-209ENST00000597423 MAP3K2Q9Y2U5 619 aa19.24■□□□□ 0.67
TRIM28-209ENST00000597423 NHSQ6T4R5 1651 aa19.24■□□□□ 0.67
TRIM28-209ENST00000597423 ITPK1Q13572 414 aa19.23■□□□□ 0.67
TRIM28-209ENST00000597423 RC3H1Q5TC82 1133 aaKnown RBP19.23■□□□□ 0.67
TRIM28-209ENST00000597423 SRCIN1Q9C0H9 1055 aa19.23■□□□□ 0.67
TRIM28-209ENST00000597423 A0A087WZG4 1122 aa19.22■□□□□ 0.67
TRIM28-209ENST00000597423 ZBTB7BO15156 539 aaPredicted RBP19.22■□□□□ 0.67
TRIM28-209ENST00000597423 CRKLP46109 303 aaKnown RBP19.22■□□□□ 0.67
TRIM28-209ENST00000597423 LRP10Q7Z4F1 713 aa19.22■□□□□ 0.67
TRIM28-209ENST00000597423 PLSCR1O15162 318 aa19.21■□□□□ 0.67
TRIM28-209ENST00000597423 ALDH1L1O75891 902 aa19.21■□□□□ 0.67
TRIM28-209ENST00000597423 PIP4K2AP48426 406 aaPredicted RBP19.21■□□□□ 0.67
TRIM28-209ENST00000597423 ARXQ96QS3 562 aa19.21■□□□□ 0.67
TRIM28-209ENST00000597423 ZNF330Q9Y3S2 320 aaPredicted RBP19.21■□□□□ 0.67
TRIM28-209ENST00000597423 APBA3O96018 575 aa19.2■□□□□ 0.66
TRIM28-209ENST00000597423 GNAI3P08754 354 aa19.2■□□□□ 0.66
TRIM28-209ENST00000597423 INTS5Q6P9B9 1019 aaKnown RBP19.2■□□□□ 0.66
TRIM28-209ENST00000597423 LINS1Q8NG48 757 aa19.2■□□□□ 0.66
TRIM28-209ENST00000597423 METTL22Q9BUU2 404 aaPredicted RBP19.2■□□□□ 0.66
TRIM28-209ENST00000597423 ZBTB40Q9NUA8 1239 aa19.2■□□□□ 0.66
TRIM28-209ENST00000597423 C5P01031 1676 aa19.2■□□□□ 0.66
TRIM28-209ENST00000597423 CNTNAP4Q9C0A0 1308 aa19.2■□□□□ 0.66
TRIM28-209ENST00000597423 LAMB4A4D0S4 1761 aa19.19■□□□□ 0.66
TRIM28-209ENST00000597423 BRWD3Q6RI45 1802 aa19.19■□□□□ 0.66
TRIM28-209ENST00000597423 BEND3Q5T5X7 828 aa19.19■□□□□ 0.66
TRIM28-209ENST00000597423 ZBTB1Q9Y2K1 713 aa19.19■□□□□ 0.66
TRIM28-209ENST00000597423 PXDNLA1KZ92 1463 aa19.19■□□□□ 0.66
TRIM28-209ENST00000597423 ADCY9O60503 1353 aa19.19■□□□□ 0.66
TRIM28-209ENST00000597423 EIF5P55010 431 aaKnown RBP19.18■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 141.7 ms