RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 ZNF496Q96IT1 587 aaPredicted RBP17.45■□□□□ 0.38
LIG1-212ENST00000596549 ANKRD31Q8N7Z5 1873 aa17.44■□□□□ 0.38
LIG1-212ENST00000596549 TTC5Q8N0Z6 440 aa17.44■□□□□ 0.38
LIG1-212ENST00000596549 NLGN1Q8N2Q7 840 aa17.44■□□□□ 0.38
LIG1-212ENST00000596549 FKBP8Q14318 412 aa17.43■□□□□ 0.38
LIG1-212ENST00000596549 WWC3Q9ULE0 1092 aa17.43■□□□□ 0.38
LIG1-212ENST00000596549 COL11A2P13942 1736 aaPredicted RBP17.42■□□□□ 0.38
LIG1-212ENST00000596549 KCNQ3O43525 872 aa17.42■□□□□ 0.38
LIG1-212ENST00000596549 DDR1Q08345 913 aa17.42■□□□□ 0.38
LIG1-212ENST00000596549 MCM10Q7L590 875 aa17.42■□□□□ 0.38
LIG1-212ENST00000596549 ZNF784Q8NCA9 323 aaPredicted RBP17.42■□□□□ 0.38
LIG1-212ENST00000596549 DDX10Q13206 875 aaKnown RBP17.41■□□□□ 0.38
LIG1-212ENST00000596549 DCTN1Q14203 1278 aa17.41■□□□□ 0.38
LIG1-212ENST00000596549 USPL1Q5W0Q7 1092 aa17.41■□□□□ 0.38
LIG1-212ENST00000596549 PLEKHF1Q96S99 279 aa17.41■□□□□ 0.38
LIG1-212ENST00000596549 BTBD11A6QL63 1104 aa17.39■□□□□ 0.37
LIG1-212ENST00000596549 BCL2L12Q9HB09 334 aa17.39■□□□□ 0.37
LIG1-212ENST00000596549 PARP3Q9Y6F1 533 aa17.39■□□□□ 0.37
LIG1-212ENST00000596549 CACNA1SQ13698 1873 aa17.39■□□□□ 0.37
LIG1-212ENST00000596549 ADCY9O60503 1353 aa17.39■□□□□ 0.37
LIG1-212ENST00000596549 POLRMTO00411 1230 aaKnown RBP17.38■□□□□ 0.37
LIG1-212ENST00000596549 GRIN3BO60391 1043 aa17.38■□□□□ 0.37
LIG1-212ENST00000596549 CANXP27824 592 aaKnown RBP17.38■□□□□ 0.37
LIG1-212ENST00000596549 FMNL2Q96PY5 1086 aa17.38■□□□□ 0.37
LIG1-212ENST00000596549 NARFQ9UHQ1 456 aa17.38■□□□□ 0.37
LIG1-212ENST00000596549 PRAMEF22A3QJZ6 481 aa17.37■□□□□ 0.37
LIG1-212ENST00000596549 EIF5P55010 431 aaKnown RBP17.37■□□□□ 0.37
LIG1-212ENST00000596549 RALBP1Q15311 655 aa17.37■□□□□ 0.37
LIG1-212ENST00000596549 RTF1Q92541 710 aaKnown RBP17.37■□□□□ 0.37
LIG1-212ENST00000596549 HTATSF1O43719 755 aaKnown RBP17.36■□□□□ 0.37
LIG1-212ENST00000596549 STARD3NLO95772 234 aa17.36■□□□□ 0.37
LIG1-212ENST00000596549 TM4SF1P30408 202 aa17.36■□□□□ 0.37
LIG1-212ENST00000596549 TGFB2P61812 414 aa17.36■□□□□ 0.37
LIG1-212ENST00000596549 MYBBP1AQ9BQG0 1328 aaKnown RBP17.36■□□□□ 0.37
LIG1-212ENST00000596549 CARMIL3Q8ND23 1372 aa17.36■□□□□ 0.37
LIG1-212ENST00000596549 ARFGEF2Q9Y6D5 1785 aa17.35■□□□□ 0.37
LIG1-212ENST00000596549 ZPR1O75312 459 aa17.35■□□□□ 0.37
LIG1-212ENST00000596549 A0A0G2JLW4 131 aa17.34■□□□□ 0.37
LIG1-212ENST00000596549 SBF1O95248 1867 aa17.34■□□□□ 0.37
LIG1-212ENST00000596549 DPEP1P16444 411 aa17.34■□□□□ 0.37
LIG1-212ENST00000596549 NFIXQ14938 502 aa17.34■□□□□ 0.37
LIG1-212ENST00000596549 ATP10DQ9P241 1426 aa17.34■□□□□ 0.37
LIG1-212ENST00000596549 A1BGP04217 495 aa17.33■□□□□ 0.36
LIG1-212ENST00000596549 KCNA3P22001 575 aa17.33■□□□□ 0.36
LIG1-212ENST00000596549 NFE2L2Q16236 605 aa17.33■□□□□ 0.36
LIG1-212ENST00000596549 TEX13AQ9BXU3 409 aaPredicted RBP17.33■□□□□ 0.36
LIG1-212ENST00000596549 USP16Q9Y5T5 823 aa17.33■□□□□ 0.36
LIG1-212ENST00000596549 IL6STP40189 918 aaPredicted RBP17.32■□□□□ 0.36
LIG1-212ENST00000596549 PIP4K2AP48426 406 aaPredicted RBP17.32■□□□□ 0.36
LIG1-212ENST00000596549 THUMPD2Q9BTF0 503 aaKnown RBP17.32■□□□□ 0.36
LIG1-212ENST00000596549 NUP98P52948 1817 aa17.32■□□□□ 0.36
LIG1-212ENST00000596549 MAPK8IP3Q9UPT6 1336 aa17.31■□□□□ 0.36
LIG1-212ENST00000596549 TIAM2Q8IVF5 1701 aa17.31■□□□□ 0.36
LIG1-212ENST00000596549 ZNF330Q9Y3S2 320 aaPredicted RBP17.31■□□□□ 0.36
LIG1-212ENST00000596549 NEFMP07197 916 aa17.3■□□□□ 0.36
LIG1-212ENST00000596549 MIS18AQ9NYP9 233 aa17.3■□□□□ 0.36
LIG1-212ENST00000596549 BCS1LQ9Y276 419 aa17.3■□□□□ 0.36
LIG1-212ENST00000596549 TNRC6CQ9HCJ0 1690 aaKnown RBP17.29■□□□□ 0.36
LIG1-212ENST00000596549 CCDC88AQ3V6T2 1871 aa17.29■□□□□ 0.36
LIG1-212ENST00000596549 A0A087WZG4 1122 aa17.29■□□□□ 0.36
LIG1-212ENST00000596549 CAMTA2O94983 1202 aa17.29■□□□□ 0.36
LIG1-212ENST00000596549 SNRPA1P09661 255 aaKnown RBP17.29■□□□□ 0.36
LIG1-212ENST00000596549 CHRNA5P30532 468 aa17.29■□□□□ 0.36
LIG1-212ENST00000596549 TAF7Q15545 349 aaPredicted RBP17.29■□□□□ 0.36
LIG1-212ENST00000596549 TBC1D9BQ66K14 1250 aa17.29■□□□□ 0.36
LIG1-212ENST00000596549 TBC1D2BQ9UPU7 963 aa17.29■□□□□ 0.36
LIG1-212ENST00000596549 ANKRD36CQ5JPF3 1778 aa17.28■□□□□ 0.36
LIG1-212ENST00000596549 SERPINB2P05120 415 aa17.28■□□□□ 0.36
LIG1-212ENST00000596549 NBPF26B4DH59 902 aa17.27■□□□□ 0.36
LIG1-212ENST00000596549 NBPF10Q6P3W6 841 aaKnown RBP17.27■□□□□ 0.36
LIG1-212ENST00000596549 BICDL1Q6ZP65 573 aa17.27■□□□□ 0.36
LIG1-212ENST00000596549 NBPF15Q8N660 670 aa17.27■□□□□ 0.36
LIG1-212ENST00000596549 PRKRIP1Q9H875 184 aaPredicted RBP17.27■□□□□ 0.36
LIG1-212ENST00000596549 DZIP3Q86Y13 1208 aaKnown RBP17.26■□□□□ 0.35
LIG1-212ENST00000596549 PNNQ9H307 717 aaKnown RBP17.26■□□□□ 0.35
LIG1-212ENST00000596549 FER1L6Q2WGJ9 1857 aa17.26■□□□□ 0.35
LIG1-212ENST00000596549 TMPOP42166 694 aaKnown RBP17.24■□□□□ 0.35
LIG1-212ENST00000596549 EIF4A1P60842 406 aaKnown RBP17.24■□□□□ 0.35
LIG1-212ENST00000596549 CCDC146Q8IYE0 955 aa17.24■□□□□ 0.35
LIG1-212ENST00000596549 PNISRQ8TF01 805 aaKnown RBP17.24■□□□□ 0.35
LIG1-212ENST00000596549 PIM2Q9P1W9 311 aa17.24■□□□□ 0.35
LIG1-212ENST00000596549 GIGYF1O75420 1035 aaPredicted RBP17.23■□□□□ 0.35
LIG1-212ENST00000596549 PRR5LQ6MZQ0 368 aa17.23■□□□□ 0.35
LIG1-212ENST00000596549 SLX4Q8IY92 1834 aa17.23■□□□□ 0.35
LIG1-212ENST00000596549 DICER1Q9UPY3 1922 aaKnown RBP17.23■□□□□ 0.35
LIG1-212ENST00000596549 RIPK4P57078 832 aa17.22■□□□□ 0.35
LIG1-212ENST00000596549 RRP7AQ9Y3A4 280 aaKnown RBP17.22■□□□□ 0.35
LIG1-212ENST00000596549 DALRD3Q5D0E6 543 aaKnown RBP17.21■□□□□ 0.35
LIG1-212ENST00000596549 CCDC24Q8N4L8 307 aa17.21■□□□□ 0.35
LIG1-212ENST00000596549 ARHGAP27Q6ZUM4 889 aa17.2■□□□□ 0.34
LIG1-212ENST00000596549 C1QTNF8P60827 252 aa17.19■□□□□ 0.34
LIG1-212ENST00000596549 WDR43Q15061 677 aaKnown RBP eCLIP17.19■□□□□ 0.34
LIG1-212ENST00000596549 NPM2Q86SE8 214 aaKnown RBP17.19■□□□□ 0.34
LIG1-212ENST00000596549 ZNF526Q8TF50 670 aaPredicted RBP17.19■□□□□ 0.34
LIG1-212ENST00000596549 RUNDC1Q96C34 613 aa17.19■□□□□ 0.34
LIG1-212ENST00000596549 TSPYL4Q9UJ04 414 aa17.19■□□□□ 0.34
LIG1-212ENST00000596549 ADAMTS8Q9UP79 889 aa17.19■□□□□ 0.34
LIG1-212ENST00000596549 LAMB2P55268 1798 aa17.19■□□□□ 0.34
LIG1-212ENST00000596549 LMOD3Q0VAK6 560 aa17.18■□□□□ 0.34
LIG1-212ENST00000596549 C2CD5Q86YS7 1000 aa17.18■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms