RNA–Protein interactions for RNA: ENST00000596436.5

USHBP1-206, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 3

Gene USHBP1, Length 487 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-206ENST00000596436 RNMTO43148 476 aaKnown RBP21.47■■□□□ 1.03
USHBP1-206ENST00000596436 NMRK2Q9NPI5 230 aa21.47■■□□□ 1.03
USHBP1-206ENST00000596436 COL3A1P02461 1466 aaPredicted RBP21.46■■□□□ 1.03
USHBP1-206ENST00000596436 APLP1P51693 650 aa21.46■■□□□ 1.03
USHBP1-206ENST00000596436 DALRD3Q5D0E6 543 aaKnown RBP21.46■■□□□ 1.03
USHBP1-206ENST00000596436 C9orf131Q5VYM1 1079 aa21.46■■□□□ 1.03
USHBP1-206ENST00000596436 USPL1Q5W0Q7 1092 aa21.45■■□□□ 1.02
USHBP1-206ENST00000596436 CHRNA5P30532 468 aa21.44■■□□□ 1.02
USHBP1-206ENST00000596436 VSIG10Q8N0Z9 540 aa21.44■■□□□ 1.02
USHBP1-206ENST00000596436 DNAJC5GQ8N7S2 189 aa21.44■■□□□ 1.02
USHBP1-206ENST00000596436 NARFQ9UHQ1 456 aa21.44■■□□□ 1.02
USHBP1-206ENST00000596436 COL15A1P39059 1388 aa21.44■■□□□ 1.02
USHBP1-206ENST00000596436 TNRC6CQ9HCJ0 1690 aaKnown RBP21.44■■□□□ 1.02
USHBP1-206ENST00000596436 ZPR1O75312 459 aa21.43■■□□□ 1.02
USHBP1-206ENST00000596436 HMOX1P09601 288 aa21.43■■□□□ 1.02
USHBP1-206ENST00000596436 SLC39A6Q13433 755 aa21.43■■□□□ 1.02
USHBP1-206ENST00000596436 MTHFSDQ2M296 383 aaKnown RBP21.43■■□□□ 1.02
USHBP1-206ENST00000596436 WDR90Q96KV7 1748 aa21.43■■□□□ 1.02
USHBP1-206ENST00000596436 RBM46Q8TBY0 533 aaKnown RBP21.42■■□□□ 1.02
USHBP1-206ENST00000596436 BCL2L12Q9HB09 334 aa21.42■■□□□ 1.02
USHBP1-206ENST00000596436 ZBTB1Q9Y2K1 713 aa21.42■■□□□ 1.02
USHBP1-206ENST00000596436 SIPA1L3O60292 1781 aaPredicted RBP21.41■■□□□ 1.02
USHBP1-206ENST00000596436 PPP2R1AP30153 589 aa21.41■■□□□ 1.02
USHBP1-206ENST00000596436 NFIXQ14938 502 aa21.41■■□□□ 1.02
USHBP1-206ENST00000596436 ZNF316A6NFI3 1004 aaPredicted RBP21.4■■□□□ 1.02
USHBP1-206ENST00000596436 DIAPH1O60610 1272 aaKnown RBP21.39■■□□□ 1.01
USHBP1-206ENST00000596436 RNF181Q9P0P0 153 aa21.39■■□□□ 1.01
USHBP1-206ENST00000596436 SCN7AQ01118 1682 aa21.38■■□□□ 1.01
USHBP1-206ENST00000596436 KDM2BQ8NHM5 1336 aa21.38■■□□□ 1.01
USHBP1-206ENST00000596436 ZC3H4Q9UPT8 1303 aaKnown RBP21.38■■□□□ 1.01
USHBP1-206ENST00000596436 FSTL1Q12841 308 aa21.37■■□□□ 1.01
USHBP1-206ENST00000596436 EIF5P55010 431 aaKnown RBP21.36■■□□□ 1.01
USHBP1-206ENST00000596436 ANKRD31Q8N7Z5 1873 aa21.35■■□□□ 1.01
USHBP1-206ENST00000596436 SERPINB2P05120 415 aa21.35■■□□□ 1.01
USHBP1-206ENST00000596436 CARMIL3Q8ND23 1372 aa21.35■■□□□ 1.01
USHBP1-206ENST00000596436 PRELPP51888 382 aa21.34■■□□□ 1.01
USHBP1-206ENST00000596436 TIAM2Q8IVF5 1701 aa21.33■■□□□ 1.01
USHBP1-206ENST00000596436 HEG1Q9ULI3 1381 aa21.33■■□□□ 1
USHBP1-206ENST00000596436 STARD3NLO95772 234 aa21.32■■□□□ 1
USHBP1-206ENST00000596436 RASSF7Q02833 373 aa21.32■■□□□ 1
USHBP1-206ENST00000596436 C16orf71Q8IYS4 520 aaPredicted RBP21.32■■□□□ 1
USHBP1-206ENST00000596436 IL17REQ8NFR9 667 aa21.32■■□□□ 1
USHBP1-206ENST00000596436 CEMIPQ8WUJ3 1361 aa21.32■■□□□ 1
USHBP1-206ENST00000596436 ZNF790Q6PG37 636 aa21.31■■□□□ 1
USHBP1-206ENST00000596436 TTLL6Q8N841 843 aa21.31■■□□□ 1
USHBP1-206ENST00000596436 ZNF496Q96IT1 587 aaPredicted RBP21.31■■□□□ 1
USHBP1-206ENST00000596436 RRAGCQ9HB90 399 aa21.31■■□□□ 1
USHBP1-206ENST00000596436 COL11A2P13942 1736 aaPredicted RBP21.31■■□□□ 1
USHBP1-206ENST00000596436 PCNTO95613 3336 aa21.3■■□□□ 1
USHBP1-206ENST00000596436 A0A087WZG4 1122 aa21.3■■□□□ 1
USHBP1-206ENST00000596436 LMNB1P20700 586 aa21.3■■□□□ 1
USHBP1-206ENST00000596436 CANXP27824 592 aaKnown RBP21.3■■□□□ 1
USHBP1-206ENST00000596436 TTC5Q8N0Z6 440 aa21.3■■□□□ 1
USHBP1-206ENST00000596436 CCDC88AQ3V6T2 1871 aa21.29■■□□□ 1
USHBP1-206ENST00000596436 GNAT3A8MTJ3 354 aa21.29■■□□□ 1
USHBP1-206ENST00000596436 RALBP1Q15311 655 aa21.29■■□□□ 1
USHBP1-206ENST00000596436 JMYQ8N9B5 988 aa21.29■■□□□ 1
USHBP1-206ENST00000596436 GAS2L2Q8NHY3 880 aa21.29■■□□□ 1
USHBP1-206ENST00000596436 CFAP53Q96M91 514 aa21.29■■□□□ 1
USHBP1-206ENST00000596436 TEX13AQ9BXU3 409 aaPredicted RBP21.29■■□□□ 1
USHBP1-206ENST00000596436 BCORQ6W2J9 1755 aa21.28■■□□□ 1
USHBP1-206ENST00000596436 NFKBIEO00221 500 aa21.28■■□□□ 1
USHBP1-206ENST00000596436 C2CD5Q86YS7 1000 aa21.28■■□□□ 1
USHBP1-206ENST00000596436 KLRG1Q96E93 195 aa21.28■■□□□ 1
USHBP1-206ENST00000596436 FER1L6Q2WGJ9 1857 aa21.28■■□□□ 1
USHBP1-206ENST00000596436 GLTPD2A6NH11 291 aa21.27■■□□□ 1
USHBP1-206ENST00000596436 H0YIN7 160 aa21.27■■□□□ 1
USHBP1-206ENST00000596436 U2SURPO15042 1029 aaKnown RBP21.27■■□□□ 1
USHBP1-206ENST00000596436 IL6STP40189 918 aaPredicted RBP21.27■■□□□ 1
USHBP1-206ENST00000596436 TEFQ10587 303 aa21.27■■□□□ 1
USHBP1-206ENST00000596436 TBC1D9BQ66K14 1250 aa21.27■■□□□ 1
USHBP1-206ENST00000596436 PDZRN3Q9UPQ7 1066 aa21.27■■□□□ 1
USHBP1-206ENST00000596436 DICER1Q9UPY3 1922 aaKnown RBP21.26■□□□□ 0.99
USHBP1-206ENST00000596436 BRIP1Q9BX63 1249 aa21.26■□□□□ 0.99
USHBP1-206ENST00000596436 HTRA3P83110 453 aa21.25■□□□□ 0.99
USHBP1-206ENST00000596436 SMC1BQ8NDV3 1235 aa21.25■□□□□ 0.99
USHBP1-206ENST00000596436 ARFGEF2Q9Y6D5 1785 aa21.25■□□□□ 0.99
USHBP1-206ENST00000596436 PRR5LQ6MZQ0 368 aa21.24■□□□□ 0.99
USHBP1-206ENST00000596436 FMNL2Q96PY5 1086 aa21.24■□□□□ 0.99
USHBP1-206ENST00000596436 MYBBP1AQ9BQG0 1328 aaKnown RBP21.24■□□□□ 0.99
USHBP1-206ENST00000596436 VEGFAP15692 232 aaPredicted RBP21.23■□□□□ 0.99
USHBP1-206ENST00000596436 BICDL1Q6ZP65 573 aa21.23■□□□□ 0.99
USHBP1-206ENST00000596436 PRKRIP1Q9H875 184 aaPredicted RBP21.23■□□□□ 0.99
USHBP1-206ENST00000596436 CAMTA2O94983 1202 aa21.22■□□□□ 0.99
USHBP1-206ENST00000596436 PDE6BP35913 854 aa21.22■□□□□ 0.99
USHBP1-206ENST00000596436 PHACTR3Q96KR7 559 aa21.22■□□□□ 0.99
USHBP1-206ENST00000596436 RSPH6AQ9H0K4 717 aa21.22■□□□□ 0.99
USHBP1-206ENST00000596436 TBC1D2BQ9UPU7 963 aa21.22■□□□□ 0.99
USHBP1-206ENST00000596436 POTECB2RU33 542 aa21.21■□□□□ 0.99
USHBP1-206ENST00000596436 LTBP3Q9NS15 1303 aa21.21■□□□□ 0.99
USHBP1-206ENST00000596436 A1BGP04217 495 aa21.2■□□□□ 0.98
USHBP1-206ENST00000596436 NUDCQ9Y266 331 aa21.2■□□□□ 0.98
USHBP1-206ENST00000596436 KCNQ3O43525 872 aa21.19■□□□□ 0.98
USHBP1-206ENST00000596436 SLX4Q8IY92 1834 aa21.18■□□□□ 0.98
USHBP1-206ENST00000596436 U2AF1L5P0DN76 240 aaPredicted RBP21.18■□□□□ 0.98
USHBP1-206ENST00000596436 PRKAR2BP31323 418 aa21.18■□□□□ 0.98
USHBP1-206ENST00000596436 U2AF1Q01081 240 aaKnown RBP eCLIP21.18■□□□□ 0.98
USHBP1-206ENST00000596436 BTBD11A6QL63 1104 aa21.17■□□□□ 0.98
USHBP1-206ENST00000596436 C21orf2O43822 256 aa21.17■□□□□ 0.98
USHBP1-206ENST00000596436 ZNF622Q969S3 477 aaKnown RBP eCLIP21.17■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms