RNA–Protein interactions for RNA: ENST00000595945.5

SHKBP1-211, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-211ENST00000595945 CRBNQ96SW2 442 aa18.83■□□□□ 0.6
SHKBP1-211ENST00000595945 PTPRCP08575 1304 aa18.82■□□□□ 0.6
SHKBP1-211ENST00000595945 KCNQ2O43526 872 aa18.82■□□□□ 0.6
SHKBP1-211ENST00000595945 EXOC6Q8TAG9 804 aa18.82■□□□□ 0.6
SHKBP1-211ENST00000595945 PANK1Q8TE04 598 aa18.82■□□□□ 0.6
SHKBP1-211ENST00000595945 API5Q9BZZ5 524 aaKnown RBP18.82■□□□□ 0.6
SHKBP1-211ENST00000595945 CHPF2Q9P2E5 772 aa18.82■□□□□ 0.6
SHKBP1-211ENST00000595945 ABCC4O15439 1325 aa18.81■□□□□ 0.6
SHKBP1-211ENST00000595945 LY75O60449 1722 aa18.81■□□□□ 0.6
SHKBP1-211ENST00000595945 RXRBP28702 533 aa18.81■□□□□ 0.6
SHKBP1-211ENST00000595945 PDIA6Q15084 440 aa18.81■□□□□ 0.6
SHKBP1-211ENST00000595945 DBF4Q9UBU7 674 aaPredicted RBP18.81■□□□□ 0.6
SHKBP1-211ENST00000595945 USP16Q9Y5T5 823 aa18.81■□□□□ 0.6
SHKBP1-211ENST00000595945 ERBB4Q15303 1308 aa18.8■□□□□ 0.6
SHKBP1-211ENST00000595945 PTCD1O75127 700 aaKnown RBP18.8■□□□□ 0.6
SHKBP1-211ENST00000595945 POTEAQ6S8J7 498 aa18.8■□□□□ 0.6
SHKBP1-211ENST00000595945 KRT27Q7Z3Y8 459 aa18.8■□□□□ 0.6
SHKBP1-211ENST00000595945 SLC4A9Q96Q91 983 aa18.8■□□□□ 0.6
SHKBP1-211ENST00000595945 DDX21Q9NR30 783 aaKnown RBP eCLIP18.8■□□□□ 0.6
SHKBP1-211ENST00000595945 COL5A3P25940 1745 aaPredicted RBP18.8■□□□□ 0.6
SHKBP1-211ENST00000595945 RREB1Q92766 1687 aa18.79■□□□□ 0.6
SHKBP1-211ENST00000595945 FLIIQ13045 1269 aa18.79■□□□□ 0.6
SHKBP1-211ENST00000595945 FAM182BQ5T319 152 aa18.79■□□□□ 0.6
SHKBP1-211ENST00000595945 CLUAP1Q96AJ1 413 aa18.79■□□□□ 0.6
SHKBP1-211ENST00000595945 PROSER3Q2NL68 480 aa18.78■□□□□ 0.6
SHKBP1-211ENST00000595945 LRP10Q7Z4F1 713 aa18.78■□□□□ 0.6
SHKBP1-211ENST00000595945 SMARCC1Q92922 1105 aaPredicted RBP18.78■□□□□ 0.6
SHKBP1-211ENST00000595945 TEX13AQ9BXU3 409 aaPredicted RBP18.78■□□□□ 0.6
SHKBP1-211ENST00000595945 PALLDQ8WX93 1383 aa18.78■□□□□ 0.6
SHKBP1-211ENST00000595945 MYH14Q7Z406 1995 aaKnown RBP18.77■□□□□ 0.6
SHKBP1-211ENST00000595945 MVPQ14764 893 aaKnown RBP18.77■□□□□ 0.6
SHKBP1-211ENST00000595945 PTF1AQ7RTS3 328 aa18.77■□□□□ 0.6
SHKBP1-211ENST00000595945 FTSJ3Q8IY81 847 aaKnown RBP18.77■□□□□ 0.6
SHKBP1-211ENST00000595945 PHAXQ9H814 394 aaKnown RBP18.77■□□□□ 0.6
SHKBP1-211ENST00000595945 HYPKQ9NX55 129 aa18.77■□□□□ 0.6
SHKBP1-211ENST00000595945 COG6Q9Y2V7 657 aa18.77■□□□□ 0.6
SHKBP1-211ENST00000595945 ANXA1P04083 346 aa18.76■□□□□ 0.59
SHKBP1-211ENST00000595945 FAM196AQ6ZSG2 479 aa18.76■□□□□ 0.59
SHKBP1-211ENST00000595945 DNAJC10Q8IXB1 793 aa18.76■□□□□ 0.59
SHKBP1-211ENST00000595945 TMEM57Q8N5G2 664 aa18.76■□□□□ 0.59
SHKBP1-211ENST00000595945 RBM42Q9BTD8 480 aaKnown RBP18.76■□□□□ 0.59
SHKBP1-211ENST00000595945 TAF1LQ8IZX4 1826 aa18.76■□□□□ 0.59
SHKBP1-211ENST00000595945 PXDNLA1KZ92 1463 aa18.76■□□□□ 0.59
SHKBP1-211ENST00000595945 PPP4R2Q9NY27 417 aa18.75■□□□□ 0.59
SHKBP1-211ENST00000595945 NUP188Q5SRE5 1749 aa18.74■□□□□ 0.59
SHKBP1-211ENST00000595945 NBPF26B4DH59 902 aa18.74■□□□□ 0.59
SHKBP1-211ENST00000595945 NBPF14Q5TI25 921 aa18.74■□□□□ 0.59
SHKBP1-211ENST00000595945 INTS3Q68E01 1043 aaKnown RBP18.74■□□□□ 0.59
SHKBP1-211ENST00000595945 NBPF10Q6P3W6 841 aaKnown RBP18.74■□□□□ 0.59
SHKBP1-211ENST00000595945 NBPF15Q8N660 670 aa18.74■□□□□ 0.59
SHKBP1-211ENST00000595945 ARFGEF2Q9Y6D5 1785 aa18.73■□□□□ 0.59
SHKBP1-211ENST00000595945 LOC102724428A0A0B4J2F2 783 aa18.73■□□□□ 0.59
SHKBP1-211ENST00000595945 CYP19A1P11511 503 aaPredicted RBP18.73■□□□□ 0.59
SHKBP1-211ENST00000595945 SIK1P57059 783 aa18.73■□□□□ 0.59
SHKBP1-211ENST00000595945 FKBP5Q13451 457 aaPredicted RBP18.73■□□□□ 0.59
SHKBP1-211ENST00000595945 BCL11BQ9C0K0 894 aaPredicted RBP18.73■□□□□ 0.59
SHKBP1-211ENST00000595945 ADCY9O60503 1353 aa18.72■□□□□ 0.59
SHKBP1-211ENST00000595945 A1BGP04217 495 aa18.72■□□□□ 0.59
SHKBP1-211ENST00000595945 DDX19BQ9UMR2 479 aa18.72■□□□□ 0.59
SHKBP1-211ENST00000595945 STARD3NLO95772 234 aa18.71■□□□□ 0.59
SHKBP1-211ENST00000595945 AAMPQ13685 434 aa18.71■□□□□ 0.59
SHKBP1-211ENST00000595945 ILDR1Q86SU0 546 aaPredicted RBP18.71■□□□□ 0.59
SHKBP1-211ENST00000595945 F6X3S4 739 aa18.7■□□□□ 0.58
SHKBP1-211ENST00000595945 ITPK1Q13572 414 aa18.7■□□□□ 0.58
SHKBP1-211ENST00000595945 ITPRIPQ8IWB1 547 aa18.7■□□□□ 0.58
SHKBP1-211ENST00000595945 ATP10DQ9P241 1426 aa18.7■□□□□ 0.58
SHKBP1-211ENST00000595945 TNS1Q9HBL0 1735 aaKnown RBP18.69■□□□□ 0.58
SHKBP1-211ENST00000595945 MYL6BP14649 208 aa18.69■□□□□ 0.58
SHKBP1-211ENST00000595945 ATP6V1AP38606 617 aa18.69■□□□□ 0.58
SHKBP1-211ENST00000595945 PIP4K2AP48426 406 aaPredicted RBP18.69■□□□□ 0.58
SHKBP1-211ENST00000595945 KSR2Q6VAB6 950 aa18.69■□□□□ 0.58
SHKBP1-211ENST00000595945 XAGE3Q8WTP9 111 aa18.69■□□□□ 0.58
SHKBP1-211ENST00000595945 PI4KAP2A4QPH2 592 aa18.68■□□□□ 0.58
SHKBP1-211ENST00000595945 CCT4P50991 539 aaKnown RBP18.68■□□□□ 0.58
SHKBP1-211ENST00000595945 COPS6Q7L5N1 327 aa18.68■□□□□ 0.58
SHKBP1-211ENST00000595945 PI4KAP1Q8N8J0 262 aa18.68■□□□□ 0.58
SHKBP1-211ENST00000595945 DNAAF4Q8WXU2 420 aa18.68■□□□□ 0.58
SHKBP1-211ENST00000595945 AFDNP55196 1824 aaKnown RBP18.67■□□□□ 0.58
SHKBP1-211ENST00000595945 ZBTB7BO15156 539 aaPredicted RBP18.67■□□□□ 0.58
SHKBP1-211ENST00000595945 ZBTB40Q9NUA8 1239 aa18.67■□□□□ 0.58
SHKBP1-211ENST00000595945 RGPD3A6NKT7 1758 aaPredicted RBP18.66■□□□□ 0.58
SHKBP1-211ENST00000595945 RGPD4Q7Z3J3 1758 aa18.66■□□□□ 0.58
SHKBP1-211ENST00000595945 NUP98P52948 1817 aa18.66■□□□□ 0.58
SHKBP1-211ENST00000595945 DDX58O95786 925 aaKnown RBP18.66■□□□□ 0.58
SHKBP1-211ENST00000595945 IBTKQ9P2D0 1353 aaPredicted RBP18.66■□□□□ 0.58
SHKBP1-211ENST00000595945 AIMP1Q12904 312 aaKnown RBP18.65■□□□□ 0.58
SHKBP1-211ENST00000595945 BEND3Q5T5X7 828 aa18.65■□□□□ 0.58
SHKBP1-211ENST00000595945 INTS5Q6P9B9 1019 aaKnown RBP18.65■□□□□ 0.58
SHKBP1-211ENST00000595945 ZBTB1Q9Y2K1 713 aa18.65■□□□□ 0.58
SHKBP1-211ENST00000595945 MAP3K2Q9Y2U5 619 aa18.65■□□□□ 0.58
SHKBP1-211ENST00000595945 ANKRD36CQ5JPF3 1778 aa18.64■□□□□ 0.57
SHKBP1-211ENST00000595945 TRIM37O94972 964 aa18.64■□□□□ 0.57
SHKBP1-211ENST00000595945 CRKLP46109 303 aaKnown RBP18.64■□□□□ 0.57
SHKBP1-211ENST00000595945 SLC4A10Q6U841 1118 aa18.64■□□□□ 0.57
SHKBP1-211ENST00000595945 TTLL7Q6ZT98 887 aa18.64■□□□□ 0.57
SHKBP1-211ENST00000595945 LINC00116Q8NCU8 138 aa18.64■□□□□ 0.57
SHKBP1-211ENST00000595945 PLBD2Q8NHP8 589 aa18.64■□□□□ 0.57
SHKBP1-211ENST00000595945 CHMP4BQ9H444 224 aaKnown RBP18.64■□□□□ 0.57
SHKBP1-211ENST00000595945 CCDC87Q9NVE4 849 aa18.64■□□□□ 0.57
SHKBP1-211ENST00000595945 IL6STP40189 918 aaPredicted RBP18.63■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms