RNA–Protein interactions for RNA: ENST00000594948.5

VRK3-209, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 2 BASIC

Gene VRK3, Length 1,847 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-209ENST00000594948 MED1Q15648 1581 aaPredicted RBP16.01■□□□□ 0.15
VRK3-209ENST00000594948 DYNC1I1O14576 645 aa16■□□□□ 0.15
VRK3-209ENST00000594948 TSHZ3Q63HK5 1081 aa16■□□□□ 0.15
VRK3-209ENST00000594948 SASS6Q6UVJ0 657 aa16■□□□□ 0.15
VRK3-209ENST00000594948 UBTFL1P0CB47 393 aaPredicted RBP15.99■□□□□ 0.15
VRK3-209ENST00000594948 XPCQ01831 940 aaPredicted RBP15.99■□□□□ 0.15
VRK3-209ENST00000594948 CHAMP1Q96JM3 812 aa15.99■□□□□ 0.15
VRK3-209ENST00000594948 CHMP4AQ9BY43 222 aa15.99■□□□□ 0.15
VRK3-209ENST00000594948 USP44Q9H0E7 712 aa15.99■□□□□ 0.15
VRK3-209ENST00000594948 USP42Q9H9J4 1324 aaKnown RBP15.99■□□□□ 0.15
VRK3-209ENST00000594948 SGSM2O43147 1006 aa15.98■□□□□ 0.15
VRK3-209ENST00000594948 MLECQ14165 292 aa15.98■□□□□ 0.15
VRK3-209ENST00000594948 CCDC183Q5T5S1 534 aa15.98■□□□□ 0.15
VRK3-209ENST00000594948 FOXD4L5Q5VV16 416 aaPredicted RBP15.98■□□□□ 0.15
VRK3-209ENST00000594948 FOXD4L4Q8WXT5 416 aaPredicted RBP15.98■□□□□ 0.15
VRK3-209ENST00000594948 AMPHP49418 695 aa15.98■□□□□ 0.15
VRK3-209ENST00000594948 USP48Q86UV5 1035 aa15.98■□□□□ 0.15
VRK3-209ENST00000594948 UNC5CLQ8IV45 518 aa15.98■□□□□ 0.15
VRK3-209ENST00000594948 TTC14Q96N46 770 aa15.98■□□□□ 0.15
VRK3-209ENST00000594948 ANKARQ7Z5J8 1434 aa15.98■□□□□ 0.15
VRK3-209ENST00000594948 KIAA2012Q0VF49 1180 aa15.97■□□□□ 0.15
VRK3-209ENST00000594948 TAF7Q15545 349 aaPredicted RBP15.97■□□□□ 0.15
VRK3-209ENST00000594948 PI4K2BQ8TCG2 481 aa15.97■□□□□ 0.15
VRK3-209ENST00000594948 ZSCAN21Q9Y5A6 473 aaPredicted RBP15.97■□□□□ 0.15
VRK3-209ENST00000594948 SLIT1O75093 1534 aa15.97■□□□□ 0.15
VRK3-209ENST00000594948 UQCRHLA0A096LP55 91 aa15.96■□□□□ 0.15
VRK3-209ENST00000594948 UQCRHP07919 91 aa15.96■□□□□ 0.15
VRK3-209ENST00000594948 HSP90AB4PQ58FF6 505 aa15.96■□□□□ 0.15
VRK3-209ENST00000594948 VSIG10Q8N0Z9 540 aa15.96■□□□□ 0.15
VRK3-209ENST00000594948 KIF1BPQ96EK5 621 aa15.96■□□□□ 0.15
VRK3-209ENST00000594948 ATP6V1DQ9Y5K8 247 aa15.96■□□□□ 0.15
VRK3-209ENST00000594948 LMO7Q8WWI1 1683 aa15.96■□□□□ 0.15
VRK3-209ENST00000594948 HOXB7P09629 217 aa15.96■□□□□ 0.14
VRK3-209ENST00000594948 ZSCAN22P10073 491 aaPredicted RBP15.96■□□□□ 0.14
VRK3-209ENST00000594948 CNTROBQ8N137 903 aa15.96■□□□□ 0.14
VRK3-209ENST00000594948 UPF3BQ9BZI7 483 aaKnown RBP15.96■□□□□ 0.14
VRK3-209ENST00000594948 LSG1Q9H089 658 aaKnown RBP15.96■□□□□ 0.14
VRK3-209ENST00000594948 SNX14Q9Y5W7 946 aa15.96■□□□□ 0.14
VRK3-209ENST00000594948 LTN1O94822 1766 aa15.95■□□□□ 0.14
VRK3-209ENST00000594948 TTC41PQ6P2S7 1318 aa15.95■□□□□ 0.14
VRK3-209ENST00000594948 KIF13AQ9H1H9 1805 aa15.95■□□□□ 0.14
VRK3-209ENST00000594948 GADD45BO75293 160 aaPredicted RBP15.95■□□□□ 0.14
VRK3-209ENST00000594948 PTMAP06454 111 aaKnown RBP15.95■□□□□ 0.14
VRK3-209ENST00000594948 UBE2HP62256 183 aa15.95■□□□□ 0.14
VRK3-209ENST00000594948 RNF214Q8ND24 703 aa15.95■□□□□ 0.14
VRK3-209ENST00000594948 RHPN1Q8TCX5 695 aa15.95■□□□□ 0.14
VRK3-209ENST00000594948 LIMCH1Q9UPQ0 1083 aa15.95■□□□□ 0.14
VRK3-209ENST00000594948 ARHGAP23Q9P227 1491 aa15.95■□□□□ 0.14
VRK3-209ENST00000594948 IL17REQ8NFR9 667 aa15.94■□□□□ 0.14
VRK3-209ENST00000594948 PDIA4P13667 645 aaKnown RBP15.94■□□□□ 0.14
VRK3-209ENST00000594948 PPP1R42Q7Z4L9 355 aa15.94■□□□□ 0.14
VRK3-209ENST00000594948 IL25Q9H293 177 aa15.94■□□□□ 0.14
VRK3-209ENST00000594948 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP15.94■□□□□ 0.145e-6■■■■□ 19.3
VRK3-209ENST00000594948 CEMIPQ8WUJ3 1361 aa15.93■□□□□ 0.14
VRK3-209ENST00000594948 SURF6O75683 361 aaKnown RBP15.93■□□□□ 0.14
VRK3-209ENST00000594948 HOXC9P31274 260 aa15.93■□□□□ 0.14
VRK3-209ENST00000594948 NOL8Q76FK4 1167 aaKnown RBP15.93■□□□□ 0.14
VRK3-209ENST00000594948 KCNB2Q92953 911 aa15.93■□□□□ 0.14
VRK3-209ENST00000594948 PHRF1Q9P1Y6 1649 aaKnown RBP15.92■□□□□ 0.14
VRK3-209ENST00000594948 STX6O43752 255 aa15.92■□□□□ 0.14
VRK3-209ENST00000594948 HDGFL1Q5TGJ6 251 aa15.92■□□□□ 0.14
VRK3-209ENST00000594948 NUTM1Q86Y26 1132 aa15.92■□□□□ 0.14
VRK3-209ENST00000594948 RUFY2Q8WXA3 655 aa15.92■□□□□ 0.14
VRK3-209ENST00000594948 PRIMPOLQ96LW4 560 aa15.92■□□□□ 0.14
VRK3-209ENST00000594948 ZSCAN31Q96LW9 406 aaPredicted RBP15.92■□□□□ 0.14
VRK3-209ENST00000594948 TM6SF1Q9BZW5 370 aa15.92■□□□□ 0.14
VRK3-209ENST00000594948 IL1RAPL2Q9NP60 686 aa15.92■□□□□ 0.14
VRK3-209ENST00000594948 F13A1P00488 732 aa15.91■□□□□ 0.14
VRK3-209ENST00000594948 AK2P54819 239 aa15.91■□□□□ 0.14
VRK3-209ENST00000594948 CYB5RLQ6IPT4 315 aa15.91■□□□□ 0.14
VRK3-209ENST00000594948 PLPPR3Q6T4P5 718 aa15.91■□□□□ 0.14
VRK3-209ENST00000594948 PIBF1Q8WXW3 757 aa15.91■□□□□ 0.14
VRK3-209ENST00000594948 TBX22Q9Y458 520 aa15.91■□□□□ 0.14
VRK3-209ENST00000594948 SOX12O15370 315 aa15.91■□□□□ 0.14
VRK3-209ENST00000594948 GLRX3O76003 335 aaKnown RBP15.91■□□□□ 0.14
VRK3-209ENST00000594948 LTKP29376 864 aa15.91■□□□□ 0.14
VRK3-209ENST00000594948 NGDNQ8NEJ9 315 aaKnown RBP15.91■□□□□ 0.14
VRK3-209ENST00000594948 ZMYND15Q9H091 742 aa15.91■□□□□ 0.14
VRK3-209ENST00000594948 SH2B1Q9NRF2 756 aaPredicted RBP15.91■□□□□ 0.14
VRK3-209ENST00000594948 SMC3Q9UQE7 1217 aa15.91■□□□□ 0.14
VRK3-209ENST00000594948 SYT1P21579 422 aa15.9■□□□□ 0.14
VRK3-209ENST00000594948 MTX1Q13505 466 aa15.9■□□□□ 0.14
VRK3-209ENST00000594948 VPS53Q5VIR6 699 aa15.9■□□□□ 0.14
VRK3-209ENST00000594948 RUFY3Q7L099 469 aa15.9■□□□□ 0.14
VRK3-209ENST00000594948 CNPY2Q9Y2B0 182 aa15.9■□□□□ 0.14
VRK3-209ENST00000594948 NUTM2FA1L443 756 aa15.89■□□□□ 0.13
VRK3-209ENST00000594948 TPM3P06753 285 aa15.89■□□□□ 0.13
VRK3-209ENST00000594948 HMGN5P82970 282 aaKnown RBP15.89■□□□□ 0.13
VRK3-209ENST00000594948 MYRIPQ8NFW9 859 aa15.89■□□□□ 0.13
VRK3-209ENST00000594948 FUCA2Q9BTY2 467 aa15.89■□□□□ 0.13
VRK3-209ENST00000594948 GDPD2Q9HCC8 539 aa15.89■□□□□ 0.13
VRK3-209ENST00000594948 SRGAP3O43295 1099 aa15.89■□□□□ 0.13
VRK3-209ENST00000594948 AMOTL2Q9Y2J4 779 aa15.89■□□□□ 0.13
VRK3-209ENST00000594948 ADGRL3Q9HAR2 1447 aa15.88■□□□□ 0.13
VRK3-209ENST00000594948 RBM10P98175 930 aaKnown RBP15.88■□□□□ 0.13
VRK3-209ENST00000594948 BEND3Q5T5X7 828 aa15.88■□□□□ 0.13
VRK3-209ENST00000594948 RASEFQ8IZ41 740 aa15.88■□□□□ 0.13
VRK3-209ENST00000594948 DNAAF4Q8WXU2 420 aa15.88■□□□□ 0.13
VRK3-209ENST00000594948 PHAXQ9H814 394 aaKnown RBP15.88■□□□□ 0.13
VRK3-209ENST00000594948 SPTLC3Q9NUV7 552 aa15.88■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms