RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 COL3A1P02461 1466 aaPredicted RBP16.8■□□□□ 0.28
UPF1-203ENST00000594504 BCL2L12Q9HB09 334 aa16.8■□□□□ 0.28
UPF1-203ENST00000594504 NARFQ9UHQ1 456 aa16.8■□□□□ 0.28
UPF1-203ENST00000594504 NPC1L1Q9UHC9 1359 aa16.79■□□□□ 0.28
UPF1-203ENST00000594504 NFIXQ14938 502 aa16.79■□□□□ 0.28
UPF1-203ENST00000594504 GNAT3A8MTJ3 354 aa16.78■□□□□ 0.28
UPF1-203ENST00000594504 DALRD3Q5D0E6 543 aaKnown RBP16.78■□□□□ 0.28
UPF1-203ENST00000594504 C9orf131Q5VYM1 1079 aa16.78■□□□□ 0.28
UPF1-203ENST00000594504 PHACTR3Q96KR7 559 aa16.78■□□□□ 0.28
UPF1-203ENST00000594504 COL15A1P39059 1388 aa16.77■□□□□ 0.28
UPF1-203ENST00000594504 AFDNP55196 1824 aaKnown RBP16.77■□□□□ 0.28
UPF1-203ENST00000594504 HSPA6P17066 643 aa16.77■□□□□ 0.28
UPF1-203ENST00000594504 TTC5Q8N0Z6 440 aa16.77■□□□□ 0.28
UPF1-203ENST00000594504 VSIG10Q8N0Z9 540 aa16.77■□□□□ 0.28
UPF1-203ENST00000594504 ZNF496Q96IT1 587 aaPredicted RBP16.77■□□□□ 0.28
UPF1-203ENST00000594504 ARFGEF1Q9Y6D6 1849 aa16.77■□□□□ 0.27
UPF1-203ENST00000594504 KCNQ3O43525 872 aa16.76■□□□□ 0.27
UPF1-203ENST00000594504 SERPINB2P05120 415 aa16.76■□□□□ 0.27
UPF1-203ENST00000594504 TEFQ10587 303 aa16.76■□□□□ 0.27
UPF1-203ENST00000594504 BICDL1Q6ZP65 573 aa16.76■□□□□ 0.27
UPF1-203ENST00000594504 GAS2L2Q8NHY3 880 aa16.76■□□□□ 0.27
UPF1-203ENST00000594504 NMRK2Q9NPI5 230 aa16.76■□□□□ 0.27
UPF1-203ENST00000594504 UBR2Q8IWV8 1755 aa16.76■□□□□ 0.27
UPF1-203ENST00000594504 PRKAR2BP31323 418 aa16.75■□□□□ 0.27
UPF1-203ENST00000594504 ZNF790Q6PG37 636 aa16.75■□□□□ 0.27
UPF1-203ENST00000594504 EIF5P55010 431 aaKnown RBP16.74■□□□□ 0.27
UPF1-203ENST00000594504 ZNF330Q9Y3S2 320 aaPredicted RBP16.74■□□□□ 0.27
UPF1-203ENST00000594504 STARD3NLO95772 234 aa16.73■□□□□ 0.27
UPF1-203ENST00000594504 RSPH6AQ9H0K4 717 aa16.73■□□□□ 0.27
UPF1-203ENST00000594504 TBC1D2BQ9UPU7 963 aa16.73■□□□□ 0.27
UPF1-203ENST00000594504 HEG1Q9ULI3 1381 aa16.73■□□□□ 0.27
UPF1-203ENST00000594504 SIPA1L3O60292 1781 aaPredicted RBP16.72■□□□□ 0.27
UPF1-203ENST00000594504 A1BGP04217 495 aa16.72■□□□□ 0.27
UPF1-203ENST00000594504 TBC1D9BQ66K14 1250 aa16.72■□□□□ 0.27
UPF1-203ENST00000594504 CCDC24Q8N4L8 307 aa16.72■□□□□ 0.27
UPF1-203ENST00000594504 RNF181Q9P0P0 153 aa16.72■□□□□ 0.27
UPF1-203ENST00000594504 SBF1O95248 1867 aa16.71■□□□□ 0.27
UPF1-203ENST00000594504 NRXN2Q9P2S2 1712 aa16.71■□□□□ 0.27
UPF1-203ENST00000594504 PPP2R1AP30153 589 aa16.71■□□□□ 0.27
UPF1-203ENST00000594504 RASSF7Q02833 373 aa16.71■□□□□ 0.27
UPF1-203ENST00000594504 CFAP53Q96M91 514 aa16.71■□□□□ 0.27
UPF1-203ENST00000594504 CARMIL3Q8ND23 1372 aa16.71■□□□□ 0.27
UPF1-203ENST00000594504 PRAMEF22A3QJZ6 481 aa16.7■□□□□ 0.26
UPF1-203ENST00000594504 BTBD11A6QL63 1104 aa16.7■□□□□ 0.26
UPF1-203ENST00000594504 TOMM70O94826 608 aa16.7■□□□□ 0.26
UPF1-203ENST00000594504 PIP4K2AP48426 406 aaPredicted RBP16.7■□□□□ 0.26
UPF1-203ENST00000594504 C2CD5Q86YS7 1000 aa16.7■□□□□ 0.26
UPF1-203ENST00000594504 USP16Q9Y5T5 823 aa16.7■□□□□ 0.26
UPF1-203ENST00000594504 CEMIPQ8WUJ3 1361 aa16.69■□□□□ 0.26
UPF1-203ENST00000594504 A0A087WZG4 1122 aa16.69■□□□□ 0.26
UPF1-203ENST00000594504 U2AF1L5P0DN76 240 aaPredicted RBP16.69■□□□□ 0.26
UPF1-203ENST00000594504 PRELPP51888 382 aa16.69■□□□□ 0.26
UPF1-203ENST00000594504 U2AF1Q01081 240 aaKnown RBP eCLIP16.69■□□□□ 0.26
UPF1-203ENST00000594504 DCTN1Q14203 1278 aa16.69■□□□□ 0.26
UPF1-203ENST00000594504 MCM10Q7L590 875 aa16.69■□□□□ 0.26
UPF1-203ENST00000594504 FMNL2Q96PY5 1086 aa16.69■□□□□ 0.26
UPF1-203ENST00000594504 TEX13AQ9BXU3 409 aaPredicted RBP16.69■□□□□ 0.26
UPF1-203ENST00000594504 RRAGCQ9HB90 399 aa16.69■□□□□ 0.26
UPF1-203ENST00000594504 NUDCQ9Y266 331 aa16.68■□□□□ 0.26
UPF1-203ENST00000594504 IL6STP40189 918 aaPredicted RBP16.67■□□□□ 0.26
UPF1-203ENST00000594504 DDX10Q13206 875 aaKnown RBP16.67■□□□□ 0.26
UPF1-203ENST00000594504 TTLL6Q8N841 843 aa16.67■□□□□ 0.26
UPF1-203ENST00000594504 ZNF219Q9P2Y4 722 aaPredicted RBP16.67■□□□□ 0.26
UPF1-203ENST00000594504 H0YIN7 160 aa16.66■□□□□ 0.26
UPF1-203ENST00000594504 ZNF622Q969S3 477 aaKnown RBP eCLIP16.66■□□□□ 0.26
UPF1-203ENST00000594504 CCDC88AQ3V6T2 1871 aa16.65■□□□□ 0.26
UPF1-203ENST00000594504 DLEC1Q9Y238 1755 aa16.65■□□□□ 0.26
UPF1-203ENST00000594504 CAMTA2O94983 1202 aa16.65■□□□□ 0.26
UPF1-203ENST00000594504 PRR5LQ6MZQ0 368 aa16.65■□□□□ 0.26
UPF1-203ENST00000594504 ANKRD31Q8N7Z5 1873 aa16.65■□□□□ 0.26
UPF1-203ENST00000594504 C16orf71Q8IYS4 520 aaPredicted RBP16.64■□□□□ 0.25
UPF1-203ENST00000594504 RTF1Q92541 710 aaKnown RBP16.64■□□□□ 0.25
UPF1-203ENST00000594504 MIS18AQ9NYP9 233 aa16.64■□□□□ 0.25
UPF1-203ENST00000594504 ZNF316A6NFI3 1004 aaPredicted RBP16.63■□□□□ 0.25
UPF1-203ENST00000594504 APLP1P51693 650 aa16.63■□□□□ 0.25
UPF1-203ENST00000594504 HTRA3P83110 453 aa16.63■□□□□ 0.25
UPF1-203ENST00000594504 DZIP3Q86Y13 1208 aaKnown RBP16.63■□□□□ 0.25
UPF1-203ENST00000594504 KDM2BQ8NHM5 1336 aa16.63■□□□□ 0.25
UPF1-203ENST00000594504 NFKBIEO00221 500 aa16.62■□□□□ 0.25
UPF1-203ENST00000594504 C21orf2O43822 256 aa16.62■□□□□ 0.25
UPF1-203ENST00000594504 NPM2Q86SE8 214 aaKnown RBP16.62■□□□□ 0.25
UPF1-203ENST00000594504 DNAJC5GQ8N7S2 189 aa16.62■□□□□ 0.25
UPF1-203ENST00000594504 RBM46Q8TBY0 533 aaKnown RBP16.62■□□□□ 0.25
UPF1-203ENST00000594504 SETDB2Q96T68 719 aa16.62■□□□□ 0.25
UPF1-203ENST00000594504 BRIP1Q9BX63 1249 aa16.62■□□□□ 0.25
UPF1-203ENST00000594504 SCN7AQ01118 1682 aa16.62■□□□□ 0.25
UPF1-203ENST00000594504 SNRPA1P09661 255 aaKnown RBP16.61■□□□□ 0.25
UPF1-203ENST00000594504 LMNB1P20700 586 aa16.61■□□□□ 0.25
UPF1-203ENST00000594504 PDE6BP35913 854 aa16.61■□□□□ 0.25
UPF1-203ENST00000594504 NBPF26B4DH59 902 aa16.6■□□□□ 0.25
UPF1-203ENST00000594504 NPHP1O15259 732 aa16.6■□□□□ 0.25
UPF1-203ENST00000594504 NBPF10Q6P3W6 841 aaKnown RBP16.6■□□□□ 0.25
UPF1-203ENST00000594504 NBPF15Q8N660 670 aa16.6■□□□□ 0.25
UPF1-203ENST00000594504 COL11A2P13942 1736 aaPredicted RBP16.59■□□□□ 0.25
UPF1-203ENST00000594504 GLTPD2A6NH11 291 aa16.59■□□□□ 0.25
UPF1-203ENST00000594504 CNBD1Q8NA66 436 aa16.59■□□□□ 0.25
UPF1-203ENST00000594504 TAF7Q15545 349 aaPredicted RBP16.58■□□□□ 0.24
UPF1-203ENST00000594504 BCORQ6W2J9 1755 aa16.58■□□□□ 0.24
UPF1-203ENST00000594504 CACNA1SQ13698 1873 aa16.58■□□□□ 0.24
UPF1-203ENST00000594504 SLX4Q8IY92 1834 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms