RNA–Protein interactions for RNA: ENST00000594104.1

VRK3-208, Transcript of vaccinia related kinase 3, humanhuman

Gene VRK3, Length 2,197 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-208ENST00000594104 RAD21O60216 631 aa14.33□□□□□ -0.12
VRK3-208ENST00000594104 RAB11FIP3O75154 756 aa14.33□□□□□ -0.12
VRK3-208ENST00000594104 PDE1AP54750 535 aa14.33□□□□□ -0.12
VRK3-208ENST00000594104 L1TD1Q5T7N2 865 aaKnown RBP14.33□□□□□ -0.12
VRK3-208ENST00000594104 EPB41L2O43491 1005 aaKnown RBP14.32□□□□□ -0.12
VRK3-208ENST00000594104 GCP02774 474 aa14.32□□□□□ -0.12
VRK3-208ENST00000594104 PLEKHG2Q9H7P9 1386 aa14.32□□□□□ -0.12
VRK3-208ENST00000594104 IBTKQ9P2D0 1353 aaPredicted RBP14.32□□□□□ -0.12
VRK3-208ENST00000594104 LTN1O94822 1766 aa14.32□□□□□ -0.12
VRK3-208ENST00000594104 ERC2O15083 957 aa14.32□□□□□ -0.12
VRK3-208ENST00000594104 CCDC82Q8N4S0 544 aa14.32□□□□□ -0.12
VRK3-208ENST00000594104 SALL3Q9BXA9 1300 aa14.31□□□□□ -0.12
VRK3-208ENST00000594104 UBTFL1P0CB47 393 aaPredicted RBP14.31□□□□□ -0.12
VRK3-208ENST00000594104 ARHGEF1Q92888 912 aaKnown RBP14.31□□□□□ -0.12
VRK3-208ENST00000594104 GBP4Q96PP9 640 aa14.31□□□□□ -0.12
VRK3-208ENST00000594104 USP44Q9H0E7 712 aa14.31□□□□□ -0.12
VRK3-208ENST00000594104 TEFQ10587 303 aa14.3□□□□□ -0.12
VRK3-208ENST00000594104 CLEC17AQ6ZS10 378 aa14.3□□□□□ -0.12
VRK3-208ENST00000594104 SSH3Q8TE77 659 aa14.3□□□□□ -0.12
VRK3-208ENST00000594104 SMARCA5O60264 1052 aaPredicted RBP14.3□□□□□ -0.12
VRK3-208ENST00000594104 RAB3GAP1Q15042 981 aa14.3□□□□□ -0.12
VRK3-208ENST00000594104 ZNF530Q6P9A1 599 aaPredicted RBP14.3□□□□□ -0.12
VRK3-208ENST00000594104 OTUD7AQ8TE49 926 aaPredicted RBP14.3□□□□□ -0.12
VRK3-208ENST00000594104 KDM4CQ9H3R0 1056 aa14.3□□□□□ -0.12
VRK3-208ENST00000594104 ISY1Q9ULR0 285 aaKnown RBP14.3□□□□□ -0.12
VRK3-208ENST00000594104 LMO7Q8WWI1 1683 aa14.3□□□□□ -0.12
VRK3-208ENST00000594104 SKOR2Q2VWA4 1001 aaPredicted RBP14.29□□□□□ -0.12
VRK3-208ENST00000594104 HSP90AB4PQ58FF6 505 aa14.29□□□□□ -0.12
VRK3-208ENST00000594104 C1orf141Q5JVX7 400 aa14.29□□□□□ -0.12
VRK3-208ENST00000594104 KIF1AQ12756 1690 aa14.29□□□□□ -0.12
VRK3-208ENST00000594104 HSP90AA1P07900 732 aaKnown RBP14.29□□□□□ -0.12
VRK3-208ENST00000594104 USHBP1Q8N6Y0 703 aa14.29□□□□□ -0.12
VRK3-208ENST00000594104 C19orf44Q9H6X5 657 aa14.29□□□□□ -0.12
VRK3-208ENST00000594104 CWC22Q9HCG8 908 aaKnown RBP14.29□□□□□ -0.12
VRK3-208ENST00000594104 RNMTO43148 476 aaKnown RBP14.28□□□□□ -0.12
VRK3-208ENST00000594104 ST18O60284 1047 aa14.27□□□□□ -0.12
VRK3-208ENST00000594104 MX1P20591 662 aa14.27□□□□□ -0.12
VRK3-208ENST00000594104 KRT28Q7Z3Y7 464 aa14.27□□□□□ -0.12
VRK3-208ENST00000594104 PROSER2Q86WR7 435 aaPredicted RBP14.27□□□□□ -0.12
VRK3-208ENST00000594104 DBF4Q9UBU7 674 aaPredicted RBP14.27□□□□□ -0.12
VRK3-208ENST00000594104 LRRFIP2Q9Y608 721 aaKnown RBP14.27□□□□□ -0.12
VRK3-208ENST00000594104 KDM3BQ7LBC6 1761 aa14.27□□□□□ -0.13
VRK3-208ENST00000594104 HEG1Q9ULI3 1381 aa14.27□□□□□ -0.13
VRK3-208ENST00000594104 BTBD11A6QL63 1104 aa14.27□□□□□ -0.13
VRK3-208ENST00000594104 TRAK2O60296 914 aa14.27□□□□□ -0.13
VRK3-208ENST00000594104 ALDH1L1O75891 902 aa14.27□□□□□ -0.13
VRK3-208ENST00000594104 BARGINQ6ZT62 677 aa14.27□□□□□ -0.13
VRK3-208ENST00000594104 IL17RAQ96F46 866 aa14.27□□□□□ -0.13
VRK3-208ENST00000594104 LGR6Q9HBX8 967 aa14.27□□□□□ -0.13
VRK3-208ENST00000594104 MCM2P49736 904 aa14.26□□□□□ -0.13
VRK3-208ENST00000594104 ANKRD24Q8TF21 1146 aa14.26□□□□□ -0.13
VRK3-208ENST00000594104 DNAAF4Q8WXU2 420 aa14.26□□□□□ -0.13
VRK3-208ENST00000594104 CAMTA1Q9Y6Y1 1673 aa14.26□□□□□ -0.13
VRK3-208ENST00000594104 PNMA6EA0A0J9YXQ4 647 aa14.26□□□□□ -0.13
VRK3-208ENST00000594104 ANAPC15P60006 121 aa14.26□□□□□ -0.13
VRK3-208ENST00000594104 NUCB2P80303 420 aa14.26□□□□□ -0.13
VRK3-208ENST00000594104 ORAI2Q96SN7 254 aa14.26□□□□□ -0.13
VRK3-208ENST00000594104 EXOC6BQ9Y2D4 811 aa14.26□□□□□ -0.13
VRK3-208ENST00000594104 C1orf167Q5SNV9 1468 aa14.25□□□□□ -0.13
VRK3-208ENST00000594104 MCCP23508 829 aa14.25□□□□□ -0.13
VRK3-208ENST00000594104 BEND3Q5T5X7 828 aa14.25□□□□□ -0.13
VRK3-208ENST00000594104 TNPO1Q92973 898 aaKnown RBP14.25□□□□□ -0.13
VRK3-208ENST00000594104 ABCC6O95255 1503 aa14.25□□□□□ -0.13
VRK3-208ENST00000594104 DCCP43146 1447 aa14.25□□□□□ -0.13
VRK3-208ENST00000594104 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.24□□□□□ -0.13
VRK3-208ENST00000594104 TRPM3Q9HCF6 1732 aaPredicted RBP14.24□□□□□ -0.13
VRK3-208ENST00000594104 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.24□□□□□ -0.13
VRK3-208ENST00000594104 MTX1Q13505 466 aa14.24□□□□□ -0.13
VRK3-208ENST00000594104 ZFP91Q96JP5 570 aaPredicted RBP14.24□□□□□ -0.13
VRK3-208ENST00000594104 ESYT1Q9BSJ8 1104 aa14.24□□□□□ -0.13
VRK3-208ENST00000594104 PHAXQ9H814 394 aaKnown RBP14.24□□□□□ -0.13
VRK3-208ENST00000594104 FSD2A1L4K1 749 aa14.23□□□□□ -0.13
VRK3-208ENST00000594104 GOLGA6L22H0YM25 854 aa14.23□□□□□ -0.13
VRK3-208ENST00000594104 CD2BP2O95400 341 aaKnown RBP14.23□□□□□ -0.13
VRK3-208ENST00000594104 RGS22Q8NE09 1264 aa14.23□□□□□ -0.13
VRK3-208ENST00000594104 KIF1BPQ96EK5 621 aa14.23□□□□□ -0.13
VRK3-208ENST00000594104 AK7Q96M32 723 aa14.23□□□□□ -0.13
VRK3-208ENST00000594104 RBM42Q9BTD8 480 aaKnown RBP14.23□□□□□ -0.13
VRK3-208ENST00000594104 HYPKQ9NX55 129 aa14.23□□□□□ -0.13
VRK3-208ENST00000594104 CHPF2Q9P2E5 772 aa14.23□□□□□ -0.13
VRK3-208ENST00000594104 GIGYF1O75420 1035 aaPredicted RBP14.23□□□□□ -0.13
VRK3-208ENST00000594104 EIF2S2P20042 333 aaKnown RBP14.23□□□□□ -0.13
VRK3-208ENST00000594104 LRRC59Q96AG4 307 aaKnown RBP14.23□□□□□ -0.13
VRK3-208ENST00000594104 PPP1R42Q7Z4L9 355 aa14.22□□□□□ -0.13
VRK3-208ENST00000594104 PI4KAP2A4QPH2 592 aa14.22□□□□□ -0.13
VRK3-208ENST00000594104 GOLGA6L3A6NEY3 463 aa14.22□□□□□ -0.13
VRK3-208ENST00000594104 CHMLP26374 656 aa14.22□□□□□ -0.13
VRK3-208ENST00000594104 KSR2Q6VAB6 950 aa14.22□□□□□ -0.13
VRK3-208ENST00000594104 MPRIPQ6WCQ1 1025 aa14.22□□□□□ -0.13
VRK3-208ENST00000594104 PI4KAP1Q8N8J0 262 aa14.22□□□□□ -0.13
VRK3-208ENST00000594104 RBM33Q96EV2 1170 aaKnown RBP14.22□□□□□ -0.13
VRK3-208ENST00000594104 USP42Q9H9J4 1324 aaKnown RBP14.22□□□□□ -0.13
VRK3-208ENST00000594104 ADAMTS7Q9UKP4 1686 aa14.21□□□□□ -0.13
VRK3-208ENST00000594104 SURF6O75683 361 aaKnown RBP14.2□□□□□ -0.14
VRK3-208ENST00000594104 DDX58O95786 925 aaKnown RBP14.2□□□□□ -0.14
VRK3-208ENST00000594104 MTMR7Q9Y216 660 aa14.2□□□□□ -0.14
VRK3-208ENST00000594104 ADCY9O60503 1353 aa14.2□□□□□ -0.14
VRK3-208ENST00000594104 ATF3P18847 181 aa14.2□□□□□ -0.14
VRK3-208ENST00000594104 ERC1Q8IUD2 1116 aa14.2□□□□□ -0.14
VRK3-208ENST00000594104 RHPN1Q8TCX5 695 aa14.2□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms