RNA–Protein interactions for RNA: ENST00000593564.2

LSM4-202, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 656 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-202ENST00000593564 NARFQ9UHQ1 456 aa32.23■■■□□ 2.75
LSM4-202ENST00000593564 KIF3CO14782 793 aa32.22■■■□□ 2.75
LSM4-202ENST00000593564 GAS2L2Q8NHY3 880 aa32.22■■■□□ 2.75
LSM4-202ENST00000593564 UBR2Q8IWV8 1755 aa32.21■■■□□ 2.75
LSM4-202ENST00000593564 DALRD3Q5D0E6 543 aaKnown RBP32.2■■■□□ 2.75
LSM4-202ENST00000593564 TTC5Q8N0Z6 440 aa32.2■■■□□ 2.75
LSM4-202ENST00000593564 ARFGEF1Q9Y6D6 1849 aa32.19■■■□□ 2.74
LSM4-202ENST00000593564 GNAT3A8MTJ3 354 aa32.18■■■□□ 2.74
LSM4-202ENST00000593564 HSPA6P17066 643 aa32.18■■■□□ 2.74
LSM4-202ENST00000593564 IL17REQ8NFR9 667 aa32.18■■■□□ 2.74
LSM4-202ENST00000593564 CHRNA5P30532 468 aa32.17■■■□□ 2.74
LSM4-202ENST00000593564 NFIXQ14938 502 aa32.17■■■□□ 2.74
LSM4-202ENST00000593564 STARD3NLO95772 234 aa32.16■■■□□ 2.74
LSM4-202ENST00000593564 TEFQ10587 303 aa32.16■■■□□ 2.74
LSM4-202ENST00000593564 BCL2L12Q9HB09 334 aa32.15■■■□□ 2.74
LSM4-202ENST00000593564 CANXP27824 592 aaKnown RBP32.14■■■□□ 2.74
LSM4-202ENST00000593564 ZNF790Q6PG37 636 aa32.14■■■□□ 2.74
LSM4-202ENST00000593564 ZNF496Q96IT1 587 aaPredicted RBP32.14■■■□□ 2.74
LSM4-202ENST00000593564 EIF5P55010 431 aaKnown RBP32.13■■■□□ 2.73
LSM4-202ENST00000593564 C9orf131Q5VYM1 1079 aa32.13■■■□□ 2.73
LSM4-202ENST00000593564 CFAP53Q96M91 514 aa32.13■■■□□ 2.73
LSM4-202ENST00000593564 HEG1Q9ULI3 1381 aa32.12■■■□□ 2.73
LSM4-202ENST00000593564 CEMIPQ8WUJ3 1361 aa32.11■■■□□ 2.73
LSM4-202ENST00000593564 TEX13AQ9BXU3 409 aaPredicted RBP32.11■■■□□ 2.73
LSM4-202ENST00000593564 NRXN2Q9P2S2 1712 aa32.11■■■□□ 2.73
LSM4-202ENST00000593564 SIPA1L3O60292 1781 aaPredicted RBP32.09■■■□□ 2.73
LSM4-202ENST00000593564 A0A087WZG4 1122 aa32.09■■■□□ 2.73
LSM4-202ENST00000593564 SERPINB2P05120 415 aa32.09■■■□□ 2.73
LSM4-202ENST00000593564 PRKAR2BP31323 418 aa32.09■■■□□ 2.73
LSM4-202ENST00000593564 RSPH6AQ9H0K4 717 aa32.09■■■□□ 2.73
LSM4-202ENST00000593564 AFDNP55196 1824 aaKnown RBP32.09■■■□□ 2.73
LSM4-202ENST00000593564 PHACTR3Q96KR7 559 aa32.08■■■□□ 2.73
LSM4-202ENST00000593564 TOMM70O94826 608 aa32.06■■■□□ 2.72
LSM4-202ENST00000593564 FMNL2Q96PY5 1086 aa32.06■■■□□ 2.72
LSM4-202ENST00000593564 NMRK2Q9NPI5 230 aa32.06■■■□□ 2.72
LSM4-202ENST00000593564 NUDCQ9Y266 331 aa32.06■■■□□ 2.72
LSM4-202ENST00000593564 RNF181Q9P0P0 153 aa32.04■■■□□ 2.72
LSM4-202ENST00000593564 PPP2R1AP30153 589 aa32.02■■■□□ 2.72
LSM4-202ENST00000593564 IL6STP40189 918 aaPredicted RBP32.02■■■□□ 2.72
LSM4-202ENST00000593564 BTBD11A6QL63 1104 aa32.01■■■□□ 2.71
LSM4-202ENST00000593564 BICDL1Q6ZP65 573 aa32.01■■■□□ 2.71
LSM4-202ENST00000593564 CARMIL3Q8ND23 1372 aa32.01■■■□□ 2.71
LSM4-202ENST00000593564 DLEC1Q9Y238 1755 aa31.99■■■□□ 2.71
LSM4-202ENST00000593564 SCN7AQ01118 1682 aa31.99■■■□□ 2.71
LSM4-202ENST00000593564 U2AF1L5P0DN76 240 aaPredicted RBP31.99■■■□□ 2.71
LSM4-202ENST00000593564 U2AF1Q01081 240 aaKnown RBP eCLIP31.99■■■□□ 2.71
LSM4-202ENST00000593564 TBC1D9BQ66K14 1250 aa31.99■■■□□ 2.71
LSM4-202ENST00000593564 C2CD5Q86YS7 1000 aa31.99■■■□□ 2.71
LSM4-202ENST00000593564 TTLL6Q8N841 843 aa31.99■■■□□ 2.71
LSM4-202ENST00000593564 KDM2BQ8NHM5 1336 aa31.99■■■□□ 2.71
LSM4-202ENST00000593564 KCNQ3O43525 872 aa31.98■■■□□ 2.71
LSM4-202ENST00000593564 TBC1D2BQ9UPU7 963 aa31.98■■■□□ 2.71
LSM4-202ENST00000593564 ZNF330Q9Y3S2 320 aaPredicted RBP31.98■■■□□ 2.71
LSM4-202ENST00000593564 H0YIN7 160 aa31.97■■■□□ 2.71
LSM4-202ENST00000593564 A1BGP04217 495 aa31.97■■■□□ 2.71
LSM4-202ENST00000593564 SBF1O95248 1867 aa31.96■■■□□ 2.71
LSM4-202ENST00000593564 APLP1P51693 650 aa31.96■■■□□ 2.71
LSM4-202ENST00000593564 RBM46Q8TBY0 533 aaKnown RBP31.96■■■□□ 2.71
LSM4-202ENST00000593564 ZC3H4Q9UPT8 1303 aaKnown RBP31.96■■■□□ 2.71
LSM4-202ENST00000593564 RASSF7Q02833 373 aa31.95■■■□□ 2.71
LSM4-202ENST00000593564 NPM2Q86SE8 214 aaKnown RBP31.95■■■□□ 2.71
LSM4-202ENST00000593564 RTF1Q92541 710 aaKnown RBP31.94■■■□□ 2.7
LSM4-202ENST00000593564 PDZRN3Q9UPQ7 1066 aa31.94■■■□□ 2.7
LSM4-202ENST00000593564 CAMTA2O94983 1202 aa31.93■■■□□ 2.7
LSM4-202ENST00000593564 C16orf71Q8IYS4 520 aaPredicted RBP31.93■■■□□ 2.7
LSM4-202ENST00000593564 BRIP1Q9BX63 1249 aa31.93■■■□□ 2.7
LSM4-202ENST00000593564 LMNB1P20700 586 aa31.92■■■□□ 2.7
LSM4-202ENST00000593564 PRR5LQ6MZQ0 368 aa31.92■■■□□ 2.7
LSM4-202ENST00000593564 MCM10Q7L590 875 aa31.92■■■□□ 2.7
LSM4-202ENST00000593564 USP16Q9Y5T5 823 aa31.91■■■□□ 2.7
LSM4-202ENST00000593564 HTATSF1O43719 755 aaKnown RBP31.9■■■□□ 2.7
LSM4-202ENST00000593564 PDE6BP35913 854 aa31.9■■■□□ 2.7
LSM4-202ENST00000593564 PRELPP51888 382 aa31.89■■■□□ 2.7
LSM4-202ENST00000593564 SETDB2Q96T68 719 aa31.89■■■□□ 2.7
LSM4-202ENST00000593564 ANKRD31Q8N7Z5 1873 aa31.89■■■□□ 2.69
LSM4-202ENST00000593564 SNRPA1P09661 255 aaKnown RBP31.88■■■□□ 2.69
LSM4-202ENST00000593564 DZIP3Q86Y13 1208 aaKnown RBP31.88■■■□□ 2.69
LSM4-202ENST00000593564 RRAGCQ9HB90 399 aa31.88■■■□□ 2.69
LSM4-202ENST00000593564 TNRC6CQ9HCJ0 1690 aaKnown RBP31.87■■■□□ 2.69
LSM4-202ENST00000593564 PRAMEF22A3QJZ6 481 aa31.86■■■□□ 2.69
LSM4-202ENST00000593564 NFKBIEO00221 500 aa31.86■■■□□ 2.69
LSM4-202ENST00000593564 FSTL1Q12841 308 aa31.86■■■□□ 2.69
LSM4-202ENST00000593564 CNBD1Q8NA66 436 aa31.86■■■□□ 2.69
LSM4-202ENST00000593564 ZNF622Q969S3 477 aaKnown RBP eCLIP31.86■■■□□ 2.69
LSM4-202ENST00000593564 DCTN1Q14203 1278 aa31.85■■■□□ 2.69
LSM4-202ENST00000593564 CCDC24Q8N4L8 307 aa31.85■■■□□ 2.69
LSM4-202ENST00000593564 BCORQ6W2J9 1755 aa31.85■■■□□ 2.69
LSM4-202ENST00000593564 PIP4K2AP48426 406 aaPredicted RBP31.84■■■□□ 2.69
LSM4-202ENST00000593564 CLEC4GQ6UXB4 293 aa31.83■■■□□ 2.69
LSM4-202ENST00000593564 COL11A2P13942 1736 aaPredicted RBP31.83■■■□□ 2.69
LSM4-202ENST00000593564 GLTPD2A6NH11 291 aa31.82■■■□□ 2.68
LSM4-202ENST00000593564 NPHP1O15259 732 aa31.82■■■□□ 2.68
LSM4-202ENST00000593564 ST5P78524 1137 aa31.82■■■□□ 2.68
LSM4-202ENST00000593564 DNAJC5GQ8N7S2 189 aa31.82■■■□□ 2.68
LSM4-202ENST00000593564 TAF7Q15545 349 aaPredicted RBP31.8■■■□□ 2.68
LSM4-202ENST00000593564 ZNF652Q9Y2D9 606 aa31.8■■■□□ 2.68
LSM4-202ENST00000593564 C21orf2O43822 256 aa31.79■■■□□ 2.68
LSM4-202ENST00000593564 RGL2O15211 777 aa31.78■■■□□ 2.68
LSM4-202ENST00000593564 IFFO2Q5TF58 517 aa31.78■■■□□ 2.68
LSM4-202ENST00000593564 STYK1Q6J9G0 422 aa31.78■■■□□ 2.68
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms