RNA–Protein interactions for RNA: ENST00000592244.1

LIG3-214, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 440 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-214ENST00000592244 SRP68Q9UHB9 627 aaKnown RBP14.5□□□□□ -0.09
LIG3-214ENST00000592244 NARFQ9UHQ1 456 aa14.5□□□□□ -0.09
LIG3-214ENST00000592244 ZBTB1Q9Y2K1 713 aa14.5□□□□□ -0.09
LIG3-214ENST00000592244 CICQ96RK0 1608 aaPredicted RBP14.5□□□□□ -0.09
LIG3-214ENST00000592244 SNRPA1P09661 255 aaKnown RBP14.49□□□□□ -0.09
LIG3-214ENST00000592244 LMOD3Q0VAK6 560 aa14.49□□□□□ -0.09
LIG3-214ENST00000592244 USPL1Q5W0Q7 1092 aa14.49□□□□□ -0.09
LIG3-214ENST00000592244 IL6STP40189 918 aaPredicted RBP14.48□□□□□ -0.09
LIG3-214ENST00000592244 FKBP8Q14318 412 aa14.48□□□□□ -0.09
LIG3-214ENST00000592244 PLEKHF1Q96S99 279 aa14.48□□□□□ -0.09
LIG3-214ENST00000592244 ZNF330Q9Y3S2 320 aaPredicted RBP14.48□□□□□ -0.09
LIG3-214ENST00000592244 YBX3P16989 372 aaKnown RBP eCLIP14.47□□□□□ -0.09
LIG3-214ENST00000592244 EIF5P55010 431 aaKnown RBP14.47□□□□□ -0.09
LIG3-214ENST00000592244 DCTN1Q14203 1278 aa14.47□□□□□ -0.09
LIG3-214ENST00000592244 TJP1Q07157 1748 aa14.46□□□□□ -0.09
LIG3-214ENST00000592244 C10orf71Q711Q0 1435 aa14.46□□□□□ -0.09
LIG3-214ENST00000592244 TM4SF1P30408 202 aa14.45□□□□□ -0.1
LIG3-214ENST00000592244 MYH14Q7Z406 1995 aaKnown RBP14.44□□□□□ -0.1
LIG3-214ENST00000592244 POLRMTO00411 1230 aaKnown RBP14.44□□□□□ -0.1
LIG3-214ENST00000592244 KCNQ3O43525 872 aa14.44□□□□□ -0.1
LIG3-214ENST00000592244 RIPK4P57078 832 aa14.44□□□□□ -0.1
LIG3-214ENST00000592244 ZNF784Q8NCA9 323 aaPredicted RBP14.44□□□□□ -0.1
LIG3-214ENST00000592244 PRKRIP1Q9H875 184 aaPredicted RBP14.44□□□□□ -0.1
LIG3-214ENST00000592244 ZNF652Q9Y2D9 606 aa14.44□□□□□ -0.1
LIG3-214ENST00000592244 A0A0G2JLW4 131 aa14.43□□□□□ -0.1
LIG3-214ENST00000592244 NPHP1O15259 732 aa14.43□□□□□ -0.1
LIG3-214ENST00000592244 A1BGP04217 495 aa14.43□□□□□ -0.1
LIG3-214ENST00000592244 DDR1Q08345 913 aa14.43□□□□□ -0.1
LIG3-214ENST00000592244 NFIXQ14938 502 aa14.43□□□□□ -0.1
LIG3-214ENST00000592244 PIM2Q9P1W9 311 aa14.43□□□□□ -0.1
LIG3-214ENST00000592244 BCS1LQ9Y276 419 aa14.43□□□□□ -0.1
LIG3-214ENST00000592244 UBR2Q8IWV8 1755 aa14.42□□□□□ -0.1
LIG3-214ENST00000592244 C4AP0C0L4 1744 aa14.42□□□□□ -0.1
LIG3-214ENST00000592244 SERPINB2P05120 415 aa14.42□□□□□ -0.1
LIG3-214ENST00000592244 DPEP1P16444 411 aa14.42□□□□□ -0.1
LIG3-214ENST00000592244 DZIP3Q86Y13 1208 aaKnown RBP14.42□□□□□ -0.1
LIG3-214ENST00000592244 RUNDC1Q96C34 613 aa14.42□□□□□ -0.1
LIG3-214ENST00000592244 BABAM1Q9NWV8 329 aa14.42□□□□□ -0.1
LIG3-214ENST00000592244 PDZRN3Q9UPQ7 1066 aa14.42□□□□□ -0.1
LIG3-214ENST00000592244 TBC1D2BQ9UPU7 963 aa14.42□□□□□ -0.1
LIG3-214ENST00000592244 USP16Q9Y5T5 823 aa14.42□□□□□ -0.1
LIG3-214ENST00000592244 PXDNLA1KZ92 1463 aa14.42□□□□□ -0.1
LIG3-214ENST00000592244 TMPOP42166 694 aaKnown RBP14.41□□□□□ -0.1
LIG3-214ENST00000592244 BICDL1Q6ZP65 573 aa14.41□□□□□ -0.1
LIG3-214ENST00000592244 SETDB2Q96T68 719 aa14.41□□□□□ -0.1
LIG3-214ENST00000592244 TSPYL4Q9UJ04 414 aa14.41□□□□□ -0.1
LIG3-214ENST00000592244 WWC3Q9ULE0 1092 aa14.41□□□□□ -0.1
LIG3-214ENST00000592244 CARMIL3Q8ND23 1372 aa14.4□□□□□ -0.1
LIG3-214ENST00000592244 RGL2O15211 777 aa14.4□□□□□ -0.1
LIG3-214ENST00000592244 DALRD3Q5D0E6 543 aaKnown RBP14.4□□□□□ -0.1
LIG3-214ENST00000592244 CLEC4GQ6UXB4 293 aa14.4□□□□□ -0.1
LIG3-214ENST00000592244 MIS18AQ9NYP9 233 aa14.4□□□□□ -0.1
LIG3-214ENST00000592244 VIRMAQ69YN4 1812 aaKnown RBP14.4□□□□□ -0.1
LIG3-214ENST00000592244 UTRNP46939 3433 aa14.4□□□□□ -0.1
LIG3-214ENST00000592244 SIPA1L3O60292 1781 aaPredicted RBP14.39□□□□□ -0.11
LIG3-214ENST00000592244 THUMPD2Q9BTF0 503 aaKnown RBP14.39□□□□□ -0.11
LIG3-214ENST00000592244 BCL2L12Q9HB09 334 aa14.39□□□□□ -0.11
LIG3-214ENST00000592244 ZNF316A6NFI3 1004 aaPredicted RBP14.38□□□□□ -0.11
LIG3-214ENST00000592244 H0YIN7 160 aa14.38□□□□□ -0.11
LIG3-214ENST00000592244 GIGYF1O75420 1035 aaPredicted RBP14.38□□□□□ -0.11
LIG3-214ENST00000592244 CAMTA2O94983 1202 aa14.38□□□□□ -0.11
LIG3-214ENST00000592244 PDE6BP35913 854 aa14.38□□□□□ -0.11
LIG3-214ENST00000592244 EIF4A1P60842 406 aaKnown RBP14.38□□□□□ -0.11
LIG3-214ENST00000592244 ST5P78524 1137 aa14.38□□□□□ -0.11
LIG3-214ENST00000592244 TBC1D9BQ66K14 1250 aa14.38□□□□□ -0.11
LIG3-214ENST00000592244 ARHGAP27Q6ZUM4 889 aa14.38□□□□□ -0.11
LIG3-214ENST00000592244 ADAMTS8Q9UP79 889 aa14.38□□□□□ -0.11
LIG3-214ENST00000592244 CHD4Q14839 1912 aa14.38□□□□□ -0.11
LIG3-214ENST00000592244 PRAMEF22A3QJZ6 481 aa14.37□□□□□ -0.11
LIG3-214ENST00000592244 NEUROD2Q15784 382 aa14.37□□□□□ -0.11
LIG3-214ENST00000592244 CCDC146Q8IYE0 955 aa14.37□□□□□ -0.11
LIG3-214ENST00000592244 CNBD1Q8NA66 436 aa14.37□□□□□ -0.11
LIG3-214ENST00000592244 BRIP1Q9BX63 1249 aa14.37□□□□□ -0.11
LIG3-214ENST00000592244 GOLGB1Q14789 3259 aaKnown RBP14.37□□□□□ -0.11
LIG3-214ENST00000592244 ERBB4Q15303 1308 aa14.37□□□□□ -0.11
LIG3-214ENST00000592244 CALD1Q05682 793 aaKnown RBP14.36□□□□□ -0.11
LIG3-214ENST00000592244 KIF6Q6ZMV9 814 aa14.36□□□□□ -0.11
LIG3-214ENST00000592244 ANP32CO43423 234 aa14.35□□□□□ -0.11
LIG3-214ENST00000592244 KCNA3P22001 575 aa14.35□□□□□ -0.11
LIG3-214ENST00000592244 CHRNA5P30532 468 aa14.35□□□□□ -0.11
LIG3-214ENST00000592244 PIP4K2AP48426 406 aaPredicted RBP14.35□□□□□ -0.11
LIG3-214ENST00000592244 NBPF5PQ86XG9 351 aaPredicted RBP14.35□□□□□ -0.11
LIG3-214ENST00000592244 C2CD5Q86YS7 1000 aa14.35□□□□□ -0.11
LIG3-214ENST00000592244 TTLL6Q8N841 843 aa14.35□□□□□ -0.11
LIG3-214ENST00000592244 RRP7AQ9Y3A4 280 aaKnown RBP14.35□□□□□ -0.11
LIG3-214ENST00000592244 KIF13BQ9NQT8 1826 aa14.34□□□□□ -0.11
LIG3-214ENST00000592244 TPTE2Q6XPS3 522 aa14.34□□□□□ -0.11
LIG3-214ENST00000592244 GPBP1L1Q9HC44 474 aaPredicted RBP14.34□□□□□ -0.11
LIG3-214ENST00000592244 NBPF26B4DH59 902 aa14.33□□□□□ -0.12
LIG3-214ENST00000592244 ERVV-1B6SEH8 477 aa14.33□□□□□ -0.12
LIG3-214ENST00000592244 GTF2E1P29083 439 aaPredicted RBP14.33□□□□□ -0.12
LIG3-214ENST00000592244 PRR5LQ6MZQ0 368 aa14.33□□□□□ -0.12
LIG3-214ENST00000592244 NBPF10Q6P3W6 841 aaKnown RBP14.33□□□□□ -0.12
LIG3-214ENST00000592244 NBPF15Q8N660 670 aa14.33□□□□□ -0.12
LIG3-214ENST00000592244 NIP7Q9Y221 180 aaKnown RBP eCLIP14.33□□□□□ -0.12
LIG3-214ENST00000592244 LAS1LQ9Y4W2 734 aaKnown RBP14.33□□□□□ -0.12
LIG3-214ENST00000592244 MYL6BP14649 208 aa14.32□□□□□ -0.12
LIG3-214ENST00000592244 NGEFQ8N5V2 710 aa14.32□□□□□ -0.12
LIG3-214ENST00000592244 ZNF622Q969S3 477 aaKnown RBP eCLIP14.32□□□□□ -0.12
LIG3-214ENST00000592244 NYXQ9GZU5 481 aa14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms