RNA–Protein interactions for RNA: ENST00000590499.1

SMAD4-211, Transcript of SMAD family member 4, humanhuman

TSL 4

Gene SMAD4, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-211ENST00000590499 TATP17735 454 aaPredicted RBP15.28■□□□□ 0.04
SMAD4-211ENST00000590499 IGSF1Q8N6C5 1336 aa15.27■□□□□ 0.04
SMAD4-211ENST00000590499 C2orf72A6NCS6 295 aa15.27■□□□□ 0.04
SMAD4-211ENST00000590499 ACSBG1Q96GR2 724 aa15.27■□□□□ 0.04
SMAD4-211ENST00000590499 PLA2G2EQ9NZK7 142 aa15.27■□□□□ 0.04
SMAD4-211ENST00000590499 PLEKHG2Q9H7P9 1386 aa15.26■□□□□ 0.03
SMAD4-211ENST00000590499 CC2D1BQ5T0F9 858 aaKnown RBP15.26■□□□□ 0.03
SMAD4-211ENST00000590499 LHX6Q9UPM6 363 aa15.26■□□□□ 0.03
SMAD4-211ENST00000590499 TOGARAM1Q9Y4F4 1720 aa15.26■□□□□ 0.03
SMAD4-211ENST00000590499 PCDH11XQ9BZA7 1347 aa15.25■□□□□ 0.03
SMAD4-211ENST00000590499 PCDH11YQ9BZA8 1340 aa15.25■□□□□ 0.03
SMAD4-211ENST00000590499 PSDA5PKW4 1024 aaPredicted RBP15.24■□□□□ 0.03
SMAD4-211ENST00000590499 CYP27B1O15528 508 aa15.24■□□□□ 0.03
SMAD4-211ENST00000590499 PAPPAQ13219 1627 aa15.24■□□□□ 0.03
SMAD4-211ENST00000590499 R3HDM1Q15032 1099 aaKnown RBP15.23■□□□□ 0.03
SMAD4-211ENST00000590499 HCSTQ9UBK5 93 aa15.23■□□□□ 0.03
SMAD4-211ENST00000590499 LRP5O75197 1615 aa15.23■□□□□ 0.03
SMAD4-211ENST00000590499 LY75O60449 1722 aa15.23■□□□□ 0.03
SMAD4-211ENST00000590499 ITGB4P16144 1822 aa15.22■□□□□ 0.03
SMAD4-211ENST00000590499 COL3A1P02461 1466 aaPredicted RBP15.22■□□□□ 0.03
SMAD4-211ENST00000590499 PPP1R37O75864 691 aa15.22■□□□□ 0.03
SMAD4-211ENST00000590499 SLC34A2O95436 690 aa15.22■□□□□ 0.03
SMAD4-211ENST00000590499 IL13P35225 146 aa15.22■□□□□ 0.03
SMAD4-211ENST00000590499 MTHFSP49914 203 aa15.22■□□□□ 0.03
SMAD4-211ENST00000590499 TXNRD1Q16881 649 aa15.22■□□□□ 0.03
SMAD4-211ENST00000590499 KDRP35968 1356 aa15.22■□□□□ 0.03
SMAD4-211ENST00000590499 PRIM1P49642 420 aaKnown RBP15.21■□□□□ 0.03
SMAD4-211ENST00000590499 ANO8Q9HCE9 1232 aaPredicted RBP15.21■□□□□ 0.03
SMAD4-211ENST00000590499 PCDHGA4Q9Y5G9 962 aa15.21■□□□□ 0.03
SMAD4-211ENST00000590499 NKX1-1Q15270 411 aaPredicted RBP15.2■□□□□ 0.02
SMAD4-211ENST00000590499 SPG7Q9UQ90 795 aa15.2■□□□□ 0.02
SMAD4-211ENST00000590499 NBPF14Q5TI25 921 aa15.19■□□□□ 0.02
SMAD4-211ENST00000590499 AEBP1Q8IUX7 1158 aa15.19■□□□□ 0.02
SMAD4-211ENST00000590499 CASZ1Q86V15 1759 aa15.19■□□□□ 0.02
SMAD4-211ENST00000590499 PHKG2P15735 406 aa15.17■□□□□ 0.02
SMAD4-211ENST00000590499 SYTL4Q96C24 671 aaPredicted RBP15.17■□□□□ 0.02
SMAD4-211ENST00000590499 SULT6B1Q6IMI4 303 aa15.16■□□□□ 0.02
SMAD4-211ENST00000590499 LRRC4BQ9NT99 713 aa15.16■□□□□ 0.02
SMAD4-211ENST00000590499 CNGB1Q14028 1251 aaPredicted RBP15.15■□□□□ 0.02
SMAD4-211ENST00000590499 ADGRD1Q6QNK2 874 aa15.15■□□□□ 0.02
SMAD4-211ENST00000590499 IFNL2Q8IZJ0 200 aa15.15■□□□□ 0.02
SMAD4-211ENST00000590499 QSER1Q2KHR3 1735 aa15.14■□□□□ 0.01
SMAD4-211ENST00000590499 DIAPH1O60610 1272 aaKnown RBP15.14■□□□□ 0.01
SMAD4-211ENST00000590499 SLC27A3Q5K4L6 730 aa15.14■□□□□ 0.01
SMAD4-211ENST00000590499 TAF1LQ8IZX4 1826 aa15.13■□□□□ 0.01
SMAD4-211ENST00000590499 TUBGCP6Q96RT7 1819 aa15.13■□□□□ 0.01
SMAD4-211ENST00000590499 KDM6AO15550 1401 aaPredicted RBP15.13■□□□□ 0.01
SMAD4-211ENST00000590499 SLC15A2Q16348 729 aa15.13■□□□□ 0.01
SMAD4-211ENST00000590499 AMOTQ4VCS5 1084 aa15.13■□□□□ 0.01
SMAD4-211ENST00000590499 PLEKHO1Q53GL0 409 aaPredicted RBP15.13■□□□□ 0.01
SMAD4-211ENST00000590499 ARHGAP33O14559 1287 aa15.12■□□□□ 0.01
SMAD4-211ENST00000590499 PPP2R1AP30153 589 aa15.12■□□□□ 0.01
SMAD4-211ENST00000590499 PIGBQ92521 554 aa15.12■□□□□ 0.01
SMAD4-211ENST00000590499 SCN11AQ9UI33 1791 aa15.11■□□□□ 0.01
SMAD4-211ENST00000590499 VIRMAQ69YN4 1812 aaKnown RBP15.11■□□□□ 0.01
SMAD4-211ENST00000590499 ZNF827Q17R98 1081 aa15.11■□□□□ 0.01
SMAD4-211ENST00000590499 ZNF530Q6P9A1 599 aaPredicted RBP15.11■□□□□ 0.01
SMAD4-211ENST00000590499 MPRIPQ6WCQ1 1025 aa15.11■□□□□ 0.01
SMAD4-211ENST00000590499 PDGFDQ9GZP0 370 aaPredicted RBP15.11■□□□□ 0.01
SMAD4-211ENST00000590499 STK32BQ9NY57 414 aa15.11■□□□□ 0.01
SMAD4-211ENST00000590499 C5P01031 1676 aa15.11■□□□□ 0.01
SMAD4-211ENST00000590499 PALLDQ8WX93 1383 aa15.11■□□□□ 0.01
SMAD4-211ENST00000590499 ADAMTS7Q9UKP4 1686 aa15.1■□□□□ 0.01
SMAD4-211ENST00000590499 HMOX1P09601 288 aa15.1■□□□□ 0.01
SMAD4-211ENST00000590499 KCNQ4P56696 695 aa15.1■□□□□ 0.01
SMAD4-211ENST00000590499 HSP90AB1P08238 724 aaKnown RBP15.09■□□□□ 0.01
SMAD4-211ENST00000590499 DCAF5Q96JK2 942 aa15.09■□□□□ 0.01
SMAD4-211ENST00000590499 CCNL1Q9UK58 526 aaPredicted RBP15.09■□□□□ 0.01
SMAD4-211ENST00000590499 ERVV-2B6SEH9 535 aa15.08■□□□□ 0
SMAD4-211ENST00000590499 ZEB1P37275 1124 aaPredicted RBP15.08■□□□□ 0
SMAD4-211ENST00000590499 TMOD3Q9NYL9 352 aa15.08■□□□□ 0
SMAD4-211ENST00000590499 ZNF831Q5JPB2 1677 aa15.07■□□□□ 0
SMAD4-211ENST00000590499 TMC2Q8TDI7 906 aa15.07■□□□□ 0
SMAD4-211ENST00000590499 SMARCC1Q92922 1105 aaPredicted RBP15.07■□□□□ 0
SMAD4-211ENST00000590499 CFAP53Q96M91 514 aa15.07■□□□□ 0
SMAD4-211ENST00000590499 MRC1P22897 1456 aa15.07■□□□□ 0
SMAD4-211ENST00000590499 COL24A1Q17RW2 1714 aa15.06■□□□□ 0
SMAD4-211ENST00000590499 C1orf141Q5JVX7 400 aa15.06■□□□□ 0
SMAD4-211ENST00000590499 ASAP1Q9ULH1 1129 aa15.06■□□□□ 0
SMAD4-211ENST00000590499 C4BP0C0L5 1744 aa15.06■□□□□ 0
SMAD4-211ENST00000590499 U2SURPO15042 1029 aaKnown RBP15.05■□□□□ -0
SMAD4-211ENST00000590499 HRO43593 1189 aa15.05■□□□□ -0
SMAD4-211ENST00000590499 DDX10Q13206 875 aaKnown RBP15.05■□□□□ -0
SMAD4-211ENST00000590499 MTHFSDQ2M296 383 aaKnown RBP15.05■□□□□ -0
SMAD4-211ENST00000590499 AKAP4Q5JQC9 854 aa15.05■□□□□ -0
SMAD4-211ENST00000590499 ATG3Q9NT62 314 aa15.05■□□□□ -0
SMAD4-211ENST00000590499 RYDENQ9NUL5 291 aaKnown RBP15.05■□□□□ -0
SMAD4-211ENST00000590499 UBR3Q6ZT12 1888 aa15.04■□□□□ -0
SMAD4-211ENST00000590499 PNPLA7Q6ZV29 1317 aa15.04■□□□□ -0
SMAD4-211ENST00000590499 TK2O00142 265 aa15.04■□□□□ -0
SMAD4-211ENST00000590499 SPON1Q9HCB6 807 aa15.04■□□□□ -0
SMAD4-211ENST00000590499 LOC102724428A0A0B4J2F2 783 aa15.03■□□□□ -0
SMAD4-211ENST00000590499 SIK1P57059 783 aa15.03■□□□□ -0
SMAD4-211ENST00000590499 RSPH6AQ9H0K4 717 aa15.03■□□□□ -0
SMAD4-211ENST00000590499 COL5A3P25940 1745 aaPredicted RBP15.03■□□□□ -0
SMAD4-211ENST00000590499 CICQ96RK0 1608 aaPredicted RBP15.03■□□□□ -0
SMAD4-211ENST00000590499 ZBTB7AO95365 584 aa15.02■□□□□ -0
SMAD4-211ENST00000590499 DMRTA1Q5VZB9 504 aa15.02■□□□□ -0
SMAD4-211ENST00000590499 CABP4P57796 275 aa15.01□□□□□ -0.01
SMAD4-211ENST00000590499 MTFR1LQ9H019 292 aa15.01□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms