RNA–Protein interactions for RNA: ENST00000590208.5

MBD1-222, Transcript of methyl-CpG binding domain protein 1, human

APPRIS ALT2 TSL 1 (best) BASIC

Gene MBD1, Length 2,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MBD1-222	ENST00000590208	LARGE1	O95461	756 aa		18.9	■□□□□ 0.62
MBD1-222	ENST00000590208	NCBP1	Q09161	790 aa	Known RBP	18.9	■□□□□ 0.62
MBD1-222	ENST00000590208	LRMP	Q12912	555 aa		18.9	■□□□□ 0.62
MBD1-222	ENST00000590208	NUTM1	Q86Y26	1132 aa		18.9	■□□□□ 0.62
MBD1-222	ENST00000590208	MYO5B	Q9ULV0	1848 aa		18.9	■□□□□ 0.62
MBD1-222	ENST00000590208	SNX14	Q9Y5W7	946 aa		18.9	■□□□□ 0.62
MBD1-222	ENST00000590208	IL17RA	Q96F46	866 aa		18.89	■□□□□ 0.61
MBD1-222	ENST00000590208	COG3	Q96JB2	828 aa		18.89	■□□□□ 0.61
MBD1-222	ENST00000590208	SMC3	Q9UQE7	1217 aa		18.89	■□□□□ 0.61
MBD1-222	ENST00000590208	CCT4	P50991	539 aa	Known RBP	18.89	■□□□□ 0.61
MBD1-222	ENST00000590208	C16orf45	Q96MC5	204 aa	Predicted RBP	18.89	■□□□□ 0.61
MBD1-222	ENST00000590208	TTC14	Q96N46	770 aa		18.89	■□□□□ 0.61
MBD1-222	ENST00000590208	SSH2	Q76I76	1423 aa		18.88	■□□□□ 0.61
MBD1-222	ENST00000590208	CAMK4	Q16566	473 aa		18.87	■□□□□ 0.61
MBD1-222	ENST00000590208	TUBGCP6	Q96RT7	1819 aa		18.87	■□□□□ 0.61
MBD1-222	ENST00000590208	EIF4A2	Q14240	407 aa	Known RBP	18.87	■□□□□ 0.61
MBD1-222	ENST00000590208	LUZP1	Q86V48	1076 aa		18.87	■□□□□ 0.61
MBD1-222	ENST00000590208	NECTIN2	Q92692	538 aa		18.87	■□□□□ 0.61
MBD1-222	ENST00000590208	STAP2	Q9UGK3	403 aa		18.87	■□□□□ 0.61
MBD1-222	ENST00000590208	NRBP1	Q9UHY1	535 aa		18.87	■□□□□ 0.61
MBD1-222	ENST00000590208	CCDC186	Q7Z3E2	898 aa		18.87	■□□□□ 0.61
MBD1-222	ENST00000590208	CCDC83	Q8IWF9	413 aa		18.87	■□□□□ 0.61
MBD1-222	ENST00000590208	FOXO3	O43524	673 aa		18.86	■□□□□ 0.61
MBD1-222	ENST00000590208	SLC52A1	Q9NWF4	448 aa		18.86	■□□□□ 0.61
MBD1-222	ENST00000590208	LIMCH1	Q9UPQ0	1083 aa		18.86	■□□□□ 0.61
MBD1-222	ENST00000590208	ZNF771	Q7L3S4	317 aa	Predicted RBP	18.86	■□□□□ 0.61
MBD1-222	ENST00000590208	LRRFIP2	Q9Y608	721 aa	Known RBP	18.86	■□□□□ 0.61
MBD1-222	ENST00000590208	GOLGA6L6	A8MZA4	724 aa		18.85	■□□□□ 0.61
MBD1-222	ENST00000590208	GJB2	P29033	226 aa		18.85	■□□□□ 0.61
MBD1-222	ENST00000590208	ATP8B2	P98198	1209 aa		18.85	■□□□□ 0.61
MBD1-222	ENST00000590208	ATP7B	P35670	1465 aa		18.85	■□□□□ 0.61
MBD1-222	ENST00000590208	CCDC192	P0DO97	292 aa		18.85	■□□□□ 0.61
MBD1-222	ENST00000590208	MTMR6	Q9Y217	621 aa		18.85	■□□□□ 0.61
MBD1-222	ENST00000590208	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	18.85	■□□□□ 0.61
MBD1-222	ENST00000590208	RAD50	Q92878	1312 aa		18.85	■□□□□ 0.61
MBD1-222	ENST00000590208	VPS37C	A5D8V6	355 aa	Predicted RBP	18.84	■□□□□ 0.61
MBD1-222	ENST00000590208	TPM3	P06753	285 aa		18.84	■□□□□ 0.61
MBD1-222	ENST00000590208	DDX54	Q8TDD1	881 aa	Known RBP	18.84	■□□□□ 0.61
MBD1-222	ENST00000590208	SPG7	Q9UQ90	795 aa		18.84	■□□□□ 0.61
MBD1-222	ENST00000590208	AATK	Q6ZMQ8	1374 aa		18.84	■□□□□ 0.61
MBD1-222	ENST00000590208	FAM173B	Q6P4H8	233 aa		18.84	■□□□□ 0.61
MBD1-222	ENST00000590208	ATP6V1D	Q9Y5K8	247 aa		18.84	■□□□□ 0.61
MBD1-222	ENST00000590208	FEZ1	Q99689	392 aa		18.84	■□□□□ 0.61
MBD1-222	ENST00000590208	CTNNA3	Q9UI47	895 aa		18.84	■□□□□ 0.61
MBD1-222	ENST00000590208	TSPYL4	Q9UJ04	414 aa		18.84	■□□□□ 0.61
MBD1-222	ENST00000590208	EDC4	Q6P2E9	1401 aa	Known RBP	18.83	■□□□□ 0.61
MBD1-222	ENST00000590208	SGSM2	O43147	1006 aa		18.83	■□□□□ 0.61
MBD1-222	ENST00000590208	CAST	P20810	708 aa	Known RBP	18.83	■□□□□ 0.61
MBD1-222	ENST00000590208	FGD1	P98174	961 aa		18.83	■□□□□ 0.61
MBD1-222	ENST00000590208	CKAP2L	Q8IYA6	745 aa		18.83	■□□□□ 0.61
MBD1-222	ENST00000590208	OGFR	Q9NZT2	677 aa		18.83	■□□□□ 0.61
MBD1-222	ENST00000590208	CGN	Q9P2M7	1197 aa	Known RBP	18.83	■□□□□ 0.61
MBD1-222	ENST00000590208	MLH3	Q9UHC1	1453 aa		18.83	■□□□□ 0.6
MBD1-222	ENST00000590208	FBXO31	Q5XUX0	539 aa	Predicted RBP	18.83	■□□□□ 0.6
MBD1-222	ENST00000590208	DRC7	Q8IY82	874 aa		18.83	■□□□□ 0.6
MBD1-222	ENST00000590208	FAM200A	Q8TCP9	573 aa		18.83	■□□□□ 0.6
MBD1-222	ENST00000590208	LSG1	Q9H089	658 aa	Known RBP	18.83	■□□□□ 0.6
MBD1-222	ENST00000590208	MRVI1	Q9Y6F6	885 aa		18.83	■□□□□ 0.6
MBD1-222	ENST00000590208	DIP2C	Q9Y2E4	1556 aa		18.83	■□□□□ 0.6
MBD1-222	ENST00000590208	CPS1	P31327	1500 aa		18.82	■□□□□ 0.6
MBD1-222	ENST00000590208	LIG1	P18858	919 aa		18.82	■□□□□ 0.6
MBD1-222	ENST00000590208	CWC27	Q6UX04	472 aa	Known RBP	18.82	■□□□□ 0.6
MBD1-222	ENST00000590208	FERMT3	Q86UX7	667 aa		18.82	■□□□□ 0.6
MBD1-222	ENST00000590208	ALK	Q9UM73	1620 aa		18.82	■□□□□ 0.6
MBD1-222	ENST00000590208	TNNT1	P13805	278 aa		18.81	■□□□□ 0.6
MBD1-222	ENST00000590208	TTC6	Q86TZ1	520 aa		18.81	■□□□□ 0.6
MBD1-222	ENST00000590208	TYRO3	Q06418	890 aa		18.81	■□□□□ 0.6
MBD1-222	ENST00000590208	HYPK	Q9NX55	129 aa		18.81	■□□□□ 0.6
MBD1-222	ENST00000590208	CRB1	P82279	1406 aa		18.81	■□□□□ 0.6
MBD1-222	ENST00000590208	SOX12	O15370	315 aa		18.8	■□□□□ 0.6
MBD1-222	ENST00000590208	GNAI3	P08754	354 aa		18.8	■□□□□ 0.6
MBD1-222	ENST00000590208	HSP90AB2P	Q58FF8	381 aa		18.8	■□□□□ 0.6
MBD1-222	ENST00000590208	NECAB1	Q8N987	351 aa		18.8	■□□□□ 0.6
MBD1-222	ENST00000590208	FLII	Q13045	1269 aa		18.8	■□□□□ 0.6
MBD1-222	ENST00000590208	ADCK5	Q3MIX3	580 aa		18.8	■□□□□ 0.6
MBD1-222	ENST00000590208	BBX	Q8WY36	941 aa	Predicted RBP	18.8	■□□□□ 0.6
MBD1-222	ENST00000590208	ZBTB22	O15209	634 aa		18.79	■□□□□ 0.6
MBD1-222	ENST00000590208	ST3GAL1	Q11201	340 aa		18.79	■□□□□ 0.6
MBD1-222	ENST00000590208	PI4K2B	Q8TCG2	481 aa		18.79	■□□□□ 0.6
MBD1-222	ENST00000590208	STAG3	Q9UJ98	1225 aa		18.79	■□□□□ 0.6
MBD1-222	ENST00000590208	MAP3K11	Q16584	847 aa		18.79	■□□□□ 0.6
MBD1-222	ENST00000590208	ANO6	Q4KMQ2	910 aa		18.79	■□□□□ 0.6
MBD1-222	ENST00000590208	RTF1	Q92541	710 aa	Known RBP	18.79	■□□□□ 0.6
MBD1-222	ENST00000590208	TRIM5	Q9C035	493 aa		18.79	■□□□□ 0.6
MBD1-222	ENST00000590208	NUP62CL	Q9H1M0	184 aa		18.79	■□□□□ 0.6
MBD1-222	ENST00000590208	CBX8	Q9HC52	389 aa		18.79	■□□□□ 0.6
MBD1-222	ENST00000590208	SMTNL1	A8MU46	457 aa		18.78	■□□□□ 0.6
MBD1-222	ENST00000590208	WASL	O00401	505 aa	Predicted RBP	18.78	■□□□□ 0.6
MBD1-222	ENST00000590208	ZSCAN25	Q6NSZ9	544 aa		18.78	■□□□□ 0.6
MBD1-222	ENST00000590208	ZNF592	Q92610	1267 aa		18.78	■□□□□ 0.6
MBD1-222	ENST00000590208	STK31	Q9BXU1	1019 aa		18.78	■□□□□ 0.6
MBD1-222	ENST00000590208	SURF6	O75683	361 aa	Known RBP	18.78	■□□□□ 0.6
MBD1-222	ENST00000590208	NUDT16	Q96DE0	195 aa	Known RBP	18.78	■□□□□ 0.6
MBD1-222	ENST00000590208	TMEM131L	A2VDJ0	1609 aa		18.78	■□□□□ 0.6
MBD1-222	ENST00000590208	DDX41	Q9UJV9	622 aa	Known RBP	18.77	■□□□□ 0.6
MBD1-222	ENST00000590208	JAKMIP1	Q96N16	626 aa	Known RBP	18.77	■□□□□ 0.6
MBD1-222	ENST00000590208	USP44	Q9H0E7	712 aa		18.77	■□□□□ 0.6
MBD1-222	ENST00000590208	SLFN14	P0C7P3	912 aa		18.77	■□□□□ 0.59
MBD1-222	ENST00000590208	GTF2E1	P29083	439 aa	Predicted RBP	18.77	■□□□□ 0.59
MBD1-222	ENST00000590208	CACTIN	Q8WUQ7	758 aa	Known RBP	18.77	■□□□□ 0.59

Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms