RNA–Protein interactions for RNA: ENST00000589857.1

ZNF540-208, Transcript of zinc finger protein 540, humanhuman

TSL 4

Gene ZNF540, Length 575 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-208ENST00000589857 DCTN1Q14203 1278 aa13.21□□□□□ -0.29
ZNF540-208ENST00000589857 MTHFSDQ2M296 383 aaKnown RBP13.21□□□□□ -0.29
ZNF540-208ENST00000589857 MCM10Q7L590 875 aa13.21□□□□□ -0.29
ZNF540-208ENST00000589857 HMGB2P26583 209 aaKnown RBP13.2□□□□□ -0.3
ZNF540-208ENST00000589857 C1QTNF8P60827 252 aa13.2□□□□□ -0.3
ZNF540-208ENST00000589857 GPR162Q16538 588 aa13.2□□□□□ -0.3
ZNF540-208ENST00000589857 ANKRD45Q5TZF3 282 aa13.2□□□□□ -0.3
ZNF540-208ENST00000589857 CCDC30Q5VVM6 783 aa13.2□□□□□ -0.3
ZNF540-208ENST00000589857 ARHGEF25Q86VW2 580 aa13.2□□□□□ -0.3
ZNF540-208ENST00000589857 PROM2Q8N271 834 aa13.2□□□□□ -0.3
ZNF540-208ENST00000589857 C22orf23Q9BZE7 217 aa13.2□□□□□ -0.3
ZNF540-208ENST00000589857 POLD1P28340 1107 aa13.19□□□□□ -0.3
ZNF540-208ENST00000589857 ANKRD44Q8N8A2 993 aa13.19□□□□□ -0.3
ZNF540-208ENST00000589857 SLC16A10Q8TF71 515 aa13.19□□□□□ -0.3
ZNF540-208ENST00000589857 IP6K1Q92551 441 aa13.19□□□□□ -0.3
ZNF540-208ENST00000589857 CASC1Q6TDU7 716 aa13.18□□□□□ -0.3
ZNF540-208ENST00000589857 LNPKQ9C0E8 428 aa13.18□□□□□ -0.3
ZNF540-208ENST00000589857 SLC4A2P04920 1241 aa13.17□□□□□ -0.3
ZNF540-208ENST00000589857 HOXB7P09629 217 aa13.17□□□□□ -0.3
ZNF540-208ENST00000589857 MFAP1P55081 439 aaKnown RBP13.17□□□□□ -0.3
ZNF540-208ENST00000589857 HSCBQ8IWL3 235 aa13.17□□□□□ -0.3
ZNF540-208ENST00000589857 DCTPP1Q9H773 170 aa13.17□□□□□ -0.3
ZNF540-208ENST00000589857 AXIN2Q9Y2T1 843 aa13.17□□□□□ -0.3
ZNF540-208ENST00000589857 CDC45O75419 566 aa13.16□□□□□ -0.3
ZNF540-208ENST00000589857 GIGYF1O75420 1035 aaPredicted RBP13.16□□□□□ -0.3
ZNF540-208ENST00000589857 SEC24BO95487 1268 aa13.16□□□□□ -0.3
ZNF540-208ENST00000589857 GNAI3P08754 354 aa13.16□□□□□ -0.3
ZNF540-208ENST00000589857 TAF7Q15545 349 aaPredicted RBP13.16□□□□□ -0.3
ZNF540-208ENST00000589857 NFKBIBQ15653 356 aa13.16□□□□□ -0.3
ZNF540-208ENST00000589857 AMOTQ4VCS5 1084 aa13.16□□□□□ -0.3
ZNF540-208ENST00000589857 SLIT3O75094 1523 aa13.16□□□□□ -0.3
ZNF540-208ENST00000589857 LRRC37A3O60309 1634 aa13.16□□□□□ -0.3
ZNF540-208ENST00000589857 DLG5Q8TDM6 1919 aa13.15□□□□□ -0.3
ZNF540-208ENST00000589857 RBM25P49756 843 aaKnown RBP13.15□□□□□ -0.3
ZNF540-208ENST00000589857 SLC27A3Q5K4L6 730 aa13.15□□□□□ -0.3
ZNF540-208ENST00000589857 PDGFDQ9GZP0 370 aaPredicted RBP13.15□□□□□ -0.3
ZNF540-208ENST00000589857 PXDNLA1KZ92 1463 aa13.15□□□□□ -0.3
ZNF540-208ENST00000589857 NCAPD2Q15021 1401 aa13.14□□□□□ -0.31
ZNF540-208ENST00000589857 IL2RBP14784 551 aa13.14□□□□□ -0.31
ZNF540-208ENST00000589857 PTF1AQ7RTS3 328 aa13.14□□□□□ -0.31
ZNF540-208ENST00000589857 NLRP2Q9NX02 1062 aa13.14□□□□□ -0.31
ZNF540-208ENST00000589857 CASZ1Q86V15 1759 aa13.13□□□□□ -0.31
ZNF540-208ENST00000589857 PLEKHG2Q9H7P9 1386 aa13.13□□□□□ -0.31
ZNF540-208ENST00000589857 GRIN3BO60391 1043 aa13.13□□□□□ -0.31
ZNF540-208ENST00000589857 GNAI2P04899 355 aa13.13□□□□□ -0.31
ZNF540-208ENST00000589857 SLC4A3P48751 1232 aa13.13□□□□□ -0.31
ZNF540-208ENST00000589857 PLEKHO1Q53GL0 409 aaPredicted RBP13.13□□□□□ -0.31
ZNF540-208ENST00000589857 CEP85Q6P2H3 762 aa13.13□□□□□ -0.31
ZNF540-208ENST00000589857 SNX21Q969T3 373 aa13.13□□□□□ -0.31
ZNF540-208ENST00000589857 SGIP1Q9BQI5 828 aa13.13□□□□□ -0.31
ZNF540-208ENST00000589857 C1orf115Q9H7X2 142 aa13.13□□□□□ -0.31
ZNF540-208ENST00000589857 NFAT5O94916 1531 aa13.13□□□□□ -0.31
ZNF540-208ENST00000589857 SIRT2Q8IXJ6 389 aa13.12□□□□□ -0.31
ZNF540-208ENST00000589857 KLHL34Q8N239 644 aa13.12□□□□□ -0.31
ZNF540-208ENST00000589857 ACSBG1Q96GR2 724 aa13.12□□□□□ -0.31
ZNF540-208ENST00000589857 HDAC5Q9UQL6 1122 aa13.12□□□□□ -0.31
ZNF540-208ENST00000589857 TNS2Q63HR2 1409 aa13.12□□□□□ -0.31
ZNF540-208ENST00000589857 ATP10DQ9P241 1426 aa13.12□□□□□ -0.31
ZNF540-208ENST00000589857 AKAP4Q5JQC9 854 aa13.11□□□□□ -0.31
ZNF540-208ENST00000589857 TBC1D2Q9BYX2 928 aa13.11□□□□□ -0.31
ZNF540-208ENST00000589857 ABCC6O95255 1503 aa13.11□□□□□ -0.31
ZNF540-208ENST00000589857 CEMIPQ8WUJ3 1361 aa13.1□□□□□ -0.31
ZNF540-208ENST00000589857 PTMSP20962 102 aa13.1□□□□□ -0.31
ZNF540-208ENST00000589857 FLIIQ13045 1269 aa13.1□□□□□ -0.31
ZNF540-208ENST00000589857 IFFO2Q5TF58 517 aa13.1□□□□□ -0.31
ZNF540-208ENST00000589857 IL27Q8NEV9 243 aa13.1□□□□□ -0.31
ZNF540-208ENST00000589857 LTV1Q96GA3 475 aaPredicted RBP13.1□□□□□ -0.31
ZNF540-208ENST00000589857 TFCP2L1Q9NZI6 479 aa13.1□□□□□ -0.31
ZNF540-208ENST00000589857 CHMP5Q9NZZ3 219 aa13.1□□□□□ -0.31
ZNF540-208ENST00000589857 SBF2Q86WG5 1849 aa13.1□□□□□ -0.31
ZNF540-208ENST00000589857 TEFQ10587 303 aa13.09□□□□□ -0.31
ZNF540-208ENST00000589857 FKBP5Q13451 457 aaPredicted RBP13.09□□□□□ -0.31
ZNF540-208ENST00000589857 C1orf141Q5JVX7 400 aa13.09□□□□□ -0.31
ZNF540-208ENST00000589857 TTC22Q5TAA0 569 aa13.09□□□□□ -0.31
ZNF540-208ENST00000589857 CIZ1Q9ULV3 898 aaPredicted RBP13.09□□□□□ -0.31
ZNF540-208ENST00000589857 ERBB3P21860 1342 aa13.09□□□□□ -0.31
ZNF540-208ENST00000589857 KRT24Q2M2I5 525 aa13.08□□□□□ -0.32
ZNF540-208ENST00000589857 HDGFL1Q5TGJ6 251 aa13.08□□□□□ -0.32
ZNF540-208ENST00000589857 SLC4A10Q6U841 1118 aa13.08□□□□□ -0.32
ZNF540-208ENST00000589857 TBC1D9Q6ZT07 1266 aa13.08□□□□□ -0.32
ZNF540-208ENST00000589857 PLEKHM2Q8IWE5 1019 aa13.08□□□□□ -0.32
ZNF540-208ENST00000589857 GSE1Q14687 1217 aa13.07□□□□□ -0.32
ZNF540-208ENST00000589857 IL17REQ8NFR9 667 aa13.07□□□□□ -0.32
ZNF540-208ENST00000589857 ANKRD24Q8TF21 1146 aa13.07□□□□□ -0.32
ZNF540-208ENST00000589857 MEIS3Q99687 375 aa13.07□□□□□ -0.32
ZNF540-208ENST00000589857 SRCIN1Q9C0H9 1055 aa13.07□□□□□ -0.32
ZNF540-208ENST00000589857 MIS18AQ9NYP9 233 aa13.07□□□□□ -0.32
ZNF540-208ENST00000589857 REC8O95072 547 aa13.06□□□□□ -0.32
ZNF540-208ENST00000589857 HSP90AB1P08238 724 aaKnown RBP13.06□□□□□ -0.32
ZNF540-208ENST00000589857 ZNF530Q6P9A1 599 aaPredicted RBP13.06□□□□□ -0.32
ZNF540-208ENST00000589857 OSBPL3Q9H4L5 887 aa13.06□□□□□ -0.32
ZNF540-208ENST00000589857 COL18A1P39060 1754 aa13.05□□□□□ -0.32
ZNF540-208ENST00000589857 MAPK8IP2Q13387 824 aaPredicted RBP13.05□□□□□ -0.32
ZNF540-208ENST00000589857 RABEP1Q15276 862 aa13.05□□□□□ -0.32
ZNF540-208ENST00000589857 HSP90AB4PQ58FF6 505 aa13.05□□□□□ -0.32
ZNF540-208ENST00000589857 DDX54Q8TDD1 881 aaKnown RBP13.05□□□□□ -0.32
ZNF540-208ENST00000589857 AKT1S1Q96B36 256 aa13.05□□□□□ -0.32
ZNF540-208ENST00000589857 SYTL4Q96C24 671 aaPredicted RBP13.05□□□□□ -0.32
ZNF540-208ENST00000589857 SLKQ9H2G2 1235 aaPredicted RBP13.05□□□□□ -0.32
ZNF540-208ENST00000589857 ANTXR1Q9H6X2 564 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms