RNA–Protein interactions for RNA: ENST00000586435.1

LIG3-209, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 588 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-209ENST00000586435 COL15A1P39059 1388 aa16.08■□□□□ 0.16
LIG3-209ENST00000586435 ARHGAP27Q6ZUM4 889 aa16.07■□□□□ 0.16
LIG3-209ENST00000586435 ZPR1O75312 459 aa16.06■□□□□ 0.16
LIG3-209ENST00000586435 SLC39A6Q13433 755 aa16.06■□□□□ 0.16
LIG3-209ENST00000586435 NARFQ9UHQ1 456 aa16.06■□□□□ 0.16
LIG3-209ENST00000586435 DALRD3Q5D0E6 543 aaKnown RBP16.05■□□□□ 0.16
LIG3-209ENST00000586435 CC2D1BQ5T0F9 858 aaKnown RBP16.05■□□□□ 0.16
LIG3-209ENST00000586435 USPL1Q5W0Q7 1092 aa16.05■□□□□ 0.16
LIG3-209ENST00000586435 SCN7AQ01118 1682 aa16.05■□□□□ 0.16
LIG3-209ENST00000586435 TOMM70O94826 608 aa16.04■□□□□ 0.16
LIG3-209ENST00000586435 ZBTB1Q9Y2K1 713 aa16.04■□□□□ 0.16
LIG3-209ENST00000586435 TNRC6CQ9HCJ0 1690 aaKnown RBP16.04■□□□□ 0.16
LIG3-209ENST00000586435 C9orf131Q5VYM1 1079 aa16.03■□□□□ 0.16
LIG3-209ENST00000586435 CHRNA5P30532 468 aa16.02■□□□□ 0.16
LIG3-209ENST00000586435 NFIXQ14938 502 aa16.02■□□□□ 0.16
LIG3-209ENST00000586435 GAS2L2Q8NHY3 880 aa16.02■□□□□ 0.16
LIG3-209ENST00000586435 TTC5Q8N0Z6 440 aa16.01■□□□□ 0.15
LIG3-209ENST00000586435 BCL2L12Q9HB09 334 aa16.01■□□□□ 0.15
LIG3-209ENST00000586435 NMRK2Q9NPI5 230 aa16.01■□□□□ 0.15
LIG3-209ENST00000586435 WDR90Q96KV7 1748 aa16■□□□□ 0.15
LIG3-209ENST00000586435 ANKRD31Q8N7Z5 1873 aa16■□□□□ 0.15
LIG3-209ENST00000586435 APLP1P51693 650 aa16■□□□□ 0.15
LIG3-209ENST00000586435 HEG1Q9ULI3 1381 aa16■□□□□ 0.15
LIG3-209ENST00000586435 CCDC88AQ3V6T2 1871 aa15.99■□□□□ 0.15
LIG3-209ENST00000586435 ZC3H4Q9UPT8 1303 aaKnown RBP15.99■□□□□ 0.15
LIG3-209ENST00000586435 GNAT3A8MTJ3 354 aa15.99■□□□□ 0.15
LIG3-209ENST00000586435 STARD3NLO95772 234 aa15.99■□□□□ 0.15
LIG3-209ENST00000586435 EIF5P55010 431 aaKnown RBP15.99■□□□□ 0.15
LIG3-209ENST00000586435 TEFQ10587 303 aa15.99■□□□□ 0.15
LIG3-209ENST00000586435 CEMIPQ8WUJ3 1361 aa15.99■□□□□ 0.15
LIG3-209ENST00000586435 KDM2BQ8NHM5 1336 aa15.98■□□□□ 0.15
LIG3-209ENST00000586435 BCORQ6W2J9 1755 aa15.98■□□□□ 0.15
LIG3-209ENST00000586435 A0A087WZG4 1122 aa15.98■□□□□ 0.15
LIG3-209ENST00000586435 U2SURPO15042 1029 aaKnown RBP15.98■□□□□ 0.15
LIG3-209ENST00000586435 SERPINB2P05120 415 aa15.98■□□□□ 0.15
LIG3-209ENST00000586435 ZNF790Q6PG37 636 aa15.98■□□□□ 0.15
LIG3-209ENST00000586435 IL17REQ8NFR9 667 aa15.98■□□□□ 0.15
LIG3-209ENST00000586435 RBM46Q8TBY0 533 aaKnown RBP15.98■□□□□ 0.15
LIG3-209ENST00000586435 TEX13AQ9BXU3 409 aaPredicted RBP15.98■□□□□ 0.15
LIG3-209ENST00000586435 RNF181Q9P0P0 153 aa15.98■□□□□ 0.15
LIG3-209ENST00000586435 TIAM2Q8IVF5 1701 aa15.97■□□□□ 0.15
LIG3-209ENST00000586435 CANXP27824 592 aaKnown RBP15.97■□□□□ 0.15
LIG3-209ENST00000586435 IFFO2Q5TF58 517 aa15.97■□□□□ 0.15
LIG3-209ENST00000586435 ZNF496Q96IT1 587 aaPredicted RBP15.97■□□□□ 0.15
LIG3-209ENST00000586435 COL11A2P13942 1736 aaPredicted RBP15.97■□□□□ 0.15
LIG3-209ENST00000586435 CARMIL3Q8ND23 1372 aa15.96■□□□□ 0.15
LIG3-209ENST00000586435 DICER1Q9UPY3 1922 aaKnown RBP15.96■□□□□ 0.14
LIG3-209ENST00000586435 IL6STP40189 918 aaPredicted RBP15.95■□□□□ 0.14
LIG3-209ENST00000586435 FER1L6Q2WGJ9 1857 aa15.95■□□□□ 0.14
LIG3-209ENST00000586435 FSTL1Q12841 308 aa15.94■□□□□ 0.14
LIG3-209ENST00000586435 C16orf71Q8IYS4 520 aaPredicted RBP15.94■□□□□ 0.14
LIG3-209ENST00000586435 TTLL6Q8N841 843 aa15.94■□□□□ 0.14
LIG3-209ENST00000586435 CFAP53Q96M91 514 aa15.94■□□□□ 0.14
LIG3-209ENST00000586435 FMNL2Q96PY5 1086 aa15.94■□□□□ 0.14
LIG3-209ENST00000586435 RSPH6AQ9H0K4 717 aa15.94■□□□□ 0.14
LIG3-209ENST00000586435 PDZRN3Q9UPQ7 1066 aa15.94■□□□□ 0.14
LIG3-209ENST00000586435 ARFGEF2Q9Y6D5 1785 aa15.94■□□□□ 0.14
LIG3-209ENST00000586435 H0YIN7 160 aa15.93■□□□□ 0.14
LIG3-209ENST00000586435 RASSF7Q02833 373 aa15.93■□□□□ 0.14
LIG3-209ENST00000586435 C2CD5Q86YS7 1000 aa15.93■□□□□ 0.14
LIG3-209ENST00000586435 LMNB1P20700 586 aa15.92■□□□□ 0.14
LIG3-209ENST00000586435 PRKAR2BP31323 418 aa15.92■□□□□ 0.14
LIG3-209ENST00000586435 TBC1D9BQ66K14 1250 aa15.92■□□□□ 0.14
LIG3-209ENST00000586435 DNAJC5GQ8N7S2 189 aa15.92■□□□□ 0.14
LIG3-209ENST00000586435 CACNA1SQ13698 1873 aa15.91■□□□□ 0.14
LIG3-209ENST00000586435 BICDL1Q6ZP65 573 aa15.91■□□□□ 0.14
LIG3-209ENST00000586435 PHACTR3Q96KR7 559 aa15.91■□□□□ 0.14
LIG3-209ENST00000586435 BRIP1Q9BX63 1249 aa15.91■□□□□ 0.14
LIG3-209ENST00000586435 NUDCQ9Y266 331 aa15.91■□□□□ 0.14
LIG3-209ENST00000586435 BTBD11A6QL63 1104 aa15.9■□□□□ 0.14
LIG3-209ENST00000586435 PDE6BP35913 854 aa15.9■□□□□ 0.14
LIG3-209ENST00000586435 PRELPP51888 382 aa15.9■□□□□ 0.14
LIG3-209ENST00000586435 CNGB1Q14028 1251 aaPredicted RBP15.9■□□□□ 0.14
LIG3-209ENST00000586435 PRR5LQ6MZQ0 368 aa15.9■□□□□ 0.14
LIG3-209ENST00000586435 RRAGCQ9HB90 399 aa15.9■□□□□ 0.14
LIG3-209ENST00000586435 TBC1D2BQ9UPU7 963 aa15.9■□□□□ 0.14
LIG3-209ENST00000586435 NFKBIEO00221 500 aa15.89■□□□□ 0.13
LIG3-209ENST00000586435 CAMTA2O94983 1202 aa15.89■□□□□ 0.13
LIG3-209ENST00000586435 A1BGP04217 495 aa15.89■□□□□ 0.13
LIG3-209ENST00000586435 ZNF330Q9Y3S2 320 aaPredicted RBP15.89■□□□□ 0.13
LIG3-209ENST00000586435 LAMB4A4D0S4 1761 aa15.89■□□□□ 0.13
LIG3-209ENST00000586435 GLTPD2A6NH11 291 aa15.88■□□□□ 0.13
LIG3-209ENST00000586435 NPM2Q86SE8 214 aaKnown RBP15.88■□□□□ 0.13
LIG3-209ENST00000586435 SMC1BQ8NDV3 1235 aa15.88■□□□□ 0.13
LIG3-209ENST00000586435 DLG5Q8TDM6 1919 aa15.88■□□□□ 0.13
LIG3-209ENST00000586435 SLX4Q8IY92 1834 aa15.87■□□□□ 0.13
LIG3-209ENST00000586435 KCNQ3O43525 872 aa15.87■□□□□ 0.13
LIG3-209ENST00000586435 PPP2R1AP30153 589 aa15.87■□□□□ 0.13
LIG3-209ENST00000586435 SETDB2Q96T68 719 aa15.87■□□□□ 0.13
LIG3-209ENST00000586435 LTBP3Q9NS15 1303 aa15.87■□□□□ 0.13
LIG3-209ENST00000586435 RGL2O15211 777 aa15.86■□□□□ 0.13
LIG3-209ENST00000586435 HTATSF1O43719 755 aaKnown RBP15.86■□□□□ 0.13
LIG3-209ENST00000586435 CLEC4GQ6UXB4 293 aa15.86■□□□□ 0.13
LIG3-209ENST00000586435 DZIP3Q86Y13 1208 aaKnown RBP15.86■□□□□ 0.13
LIG3-209ENST00000586435 CNBD1Q8NA66 436 aa15.86■□□□□ 0.13
LIG3-209ENST00000586435 RTF1Q92541 710 aaKnown RBP15.86■□□□□ 0.13
LIG3-209ENST00000586435 KLRG1Q96E93 195 aa15.86■□□□□ 0.13
LIG3-209ENST00000586435 USP16Q9Y5T5 823 aa15.86■□□□□ 0.13
LIG3-209ENST00000586435 KDM3BQ7LBC6 1761 aa15.85■□□□□ 0.13
LIG3-209ENST00000586435 SNRPA1P09661 255 aaKnown RBP15.85■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms