RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 ATP8B2P98198 1209 aa17.65■□□□□ 0.42
LIG3-205ENST00000585941 SLC39A6Q13433 755 aa17.65■□□□□ 0.42
LIG3-205ENST00000585941 BEND3Q5T5X7 828 aa17.65■□□□□ 0.42
LIG3-205ENST00000585941 LAMB4A4D0S4 1761 aa17.65■□□□□ 0.42
LIG3-205ENST00000585941 ADCY9O60503 1353 aa17.65■□□□□ 0.42
LIG3-205ENST00000585941 EIF5BO60841 1220 aaKnown RBP17.64■□□□□ 0.42
LIG3-205ENST00000585941 ZNF496Q96IT1 587 aaPredicted RBP17.64■□□□□ 0.42
LIG3-205ENST00000585941 PHLPP1O60346 1717 aa17.64■□□□□ 0.41
LIG3-205ENST00000585941 BTG4Q9NY30 223 aa17.64■□□□□ 0.41
LIG3-205ENST00000585941 UBR2Q8IWV8 1755 aa17.63■□□□□ 0.41
LIG3-205ENST00000585941 PLCH1Q4KWH8 1693 aa17.63■□□□□ 0.41
LIG3-205ENST00000585941 COL16A1Q07092 1604 aaPredicted RBP17.62■□□□□ 0.41
LIG3-205ENST00000585941 ERBB4Q15303 1308 aa17.62■□□□□ 0.41
LIG3-205ENST00000585941 LRRFIP2Q9Y608 721 aaKnown RBP17.62■□□□□ 0.41
LIG3-205ENST00000585941 PAPPAQ13219 1627 aa17.62■□□□□ 0.41
LIG3-205ENST00000585941 PRAMEF22A3QJZ6 481 aa17.61■□□□□ 0.41
LIG3-205ENST00000585941 ANXA1P04083 346 aa17.61■□□□□ 0.41
LIG3-205ENST00000585941 PDIA6Q15084 440 aa17.61■□□□□ 0.41
LIG3-205ENST00000585941 MAP3K2Q9Y2U5 619 aa17.61■□□□□ 0.41
LIG3-205ENST00000585941 TOM1O60784 492 aa17.61■□□□□ 0.41
LIG3-205ENST00000585941 PROSER3Q2NL68 480 aa17.61■□□□□ 0.41
LIG3-205ENST00000585941 LINS1Q8NG48 757 aa17.61■□□□□ 0.41
LIG3-205ENST00000585941 SEC24BO95487 1268 aa17.6■□□□□ 0.41
LIG3-205ENST00000585941 PLEKHM2Q8IWE5 1019 aa17.6■□□□□ 0.41
LIG3-205ENST00000585941 DDX54Q8TDD1 881 aaKnown RBP17.59■□□□□ 0.41
LIG3-205ENST00000585941 SSH3Q8TE77 659 aa17.59■□□□□ 0.41
LIG3-205ENST00000585941 GLI3P10071 1580 aa17.59■□□□□ 0.41
LIG3-205ENST00000585941 DISP2A7MBM2 1401 aa17.59■□□□□ 0.41
LIG3-205ENST00000585941 TBC1D32Q96NH3 1257 aa17.58■□□□□ 0.41
LIG3-205ENST00000585941 DAXXQ9UER7 740 aaPredicted RBP17.58■□□□□ 0.41
LIG3-205ENST00000585941 NEXNQ0ZGT2 675 aa17.58■□□□□ 0.4
LIG3-205ENST00000585941 LRRCC1Q9C099 1032 aa17.58■□□□□ 0.4
LIG3-205ENST00000585941 WNK3Q9BYP7 1800 aa17.57■□□□□ 0.4
LIG3-205ENST00000585941 PNMA6EA0A0J9YXQ4 647 aa17.57■□□□□ 0.4
LIG3-205ENST00000585941 RAB11FIP3O75154 756 aa17.57■□□□□ 0.4
LIG3-205ENST00000585941 RIC3Q7Z5B4 369 aa17.57■□□□□ 0.4
LIG3-205ENST00000585941 CDCA7Q9BWT1 371 aaPredicted RBP17.57■□□□□ 0.4
LIG3-205ENST00000585941 C9orf78Q9NZ63 289 aaPredicted RBP17.57■□□□□ 0.4
LIG3-205ENST00000585941 TNS2Q63HR2 1409 aa17.56■□□□□ 0.4
LIG3-205ENST00000585941 MTX1Q13505 466 aa17.56■□□□□ 0.4
LIG3-205ENST00000585941 POLA2Q14181 598 aa17.56■□□□□ 0.4
LIG3-205ENST00000585941 HSP90AB4PQ58FF6 505 aa17.56■□□□□ 0.4
LIG3-205ENST00000585941 TTC22Q5TAA0 569 aa17.56■□□□□ 0.4
LIG3-205ENST00000585941 OSBPL3Q9H4L5 887 aa17.56■□□□□ 0.4
LIG3-205ENST00000585941 USP16Q9Y5T5 823 aa17.56■□□□□ 0.4
LIG3-205ENST00000585941 LRP6O75581 1613 aa17.56■□□□□ 0.4
LIG3-205ENST00000585941 UTYO14607 1347 aa17.56■□□□□ 0.4
LIG3-205ENST00000585941 NBPF7P0C2Y1 421 aaPredicted RBP17.55■□□□□ 0.4
LIG3-205ENST00000585941 ANP32EQ9BTT0 268 aa17.55■□□□□ 0.4
LIG3-205ENST00000585941 KCPQ6ZWJ8 1503 aa17.55■□□□□ 0.4
LIG3-205ENST00000585941 TOGARAM1Q9Y4F4 1720 aa17.55■□□□□ 0.4
LIG3-205ENST00000585941 CDC45O75419 566 aa17.55■□□□□ 0.4
LIG3-205ENST00000585941 MYL6BP14649 208 aa17.55■□□□□ 0.4
LIG3-205ENST00000585941 AIMP1Q12904 312 aaKnown RBP17.55■□□□□ 0.4
LIG3-205ENST00000585941 COPS6Q7L5N1 327 aa17.55■□□□□ 0.4
LIG3-205ENST00000585941 PPP1R42Q7Z4L9 355 aa17.55■□□□□ 0.4
LIG3-205ENST00000585941 XAGE3Q8WTP9 111 aa17.55■□□□□ 0.4
LIG3-205ENST00000585941 TMOD3Q9NYL9 352 aa17.55■□□□□ 0.4
LIG3-205ENST00000585941 USP35Q9P2H5 1018 aa17.55■□□□□ 0.4
LIG3-205ENST00000585941 ANKRD13DQ6ZTN6 518 aa17.54■□□□□ 0.4
LIG3-205ENST00000585941 LRP10Q7Z4F1 713 aa17.54■□□□□ 0.4
LIG3-205ENST00000585941 METTL22Q9BUU2 404 aaPredicted RBP17.54■□□□□ 0.4
LIG3-205ENST00000585941 EXOC6BQ9Y2D4 811 aa17.54■□□□□ 0.4
LIG3-205ENST00000585941 THRAP3Q9Y2W1 955 aaKnown RBP17.54■□□□□ 0.4
LIG3-205ENST00000585941 NRAPQ86VF7 1730 aa17.53■□□□□ 0.4
LIG3-205ENST00000585941 NWD2Q9ULI1 1742 aa17.53■□□□□ 0.4
LIG3-205ENST00000585941 GRM8O00222 908 aa17.53■□□□□ 0.4
LIG3-205ENST00000585941 APBB1O00213 710 aa17.52■□□□□ 0.4
LIG3-205ENST00000585941 SRGAP3O43295 1099 aa17.52■□□□□ 0.4
LIG3-205ENST00000585941 SMARCA5O60264 1052 aaPredicted RBP17.52■□□□□ 0.4
LIG3-205ENST00000585941 BECN1Q14457 450 aa17.52■□□□□ 0.4
LIG3-205ENST00000585941 C16orf71Q8IYS4 520 aaPredicted RBP17.52■□□□□ 0.4
LIG3-205ENST00000585941 TEX13AQ9BXU3 409 aaPredicted RBP17.52■□□□□ 0.4
LIG3-205ENST00000585941 ARFGEF2Q9Y6D5 1785 aa17.52■□□□□ 0.39
LIG3-205ENST00000585941 ITGB4P16144 1822 aa17.52■□□□□ 0.39
LIG3-205ENST00000585941 EXOC5O00471 708 aa17.52■□□□□ 0.39
LIG3-205ENST00000585941 MFAP1P55081 439 aaKnown RBP17.52■□□□□ 0.39
LIG3-205ENST00000585941 VSIG10Q8N0Z9 540 aa17.52■□□□□ 0.39
LIG3-205ENST00000585941 C22orf23Q9BZE7 217 aa17.52■□□□□ 0.39
LIG3-205ENST00000585941 GSPT1P15170 499 aaKnown RBP17.51■□□□□ 0.39
LIG3-205ENST00000585941 CWF19L2Q2TBE0 894 aaKnown RBP17.51■□□□□ 0.39
LIG3-205ENST00000585941 PLBD2Q8NHP8 589 aa17.51■□□□□ 0.39
LIG3-205ENST00000585941 AOX1Q06278 1338 aa17.51■□□□□ 0.39
LIG3-205ENST00000585941 NEURL1BA8MQ27 555 aa17.5■□□□□ 0.39
LIG3-205ENST00000585941 SURF6O75683 361 aaKnown RBP17.5■□□□□ 0.39
LIG3-205ENST00000585941 PDE1AP54750 535 aa17.5■□□□□ 0.39
LIG3-205ENST00000585941 CASC1Q6TDU7 716 aa17.5■□□□□ 0.39
LIG3-205ENST00000585941 TBC1D9Q6ZT07 1266 aa17.5■□□□□ 0.39
LIG3-205ENST00000585941 KIF1BPQ96EK5 621 aa17.5■□□□□ 0.39
LIG3-205ENST00000585941 SALL3Q9BXA9 1300 aa17.49■□□□□ 0.39
LIG3-205ENST00000585941 AFDNP55196 1824 aaKnown RBP17.49■□□□□ 0.39
LIG3-205ENST00000585941 IGKV5-2P06315 115 aa17.48■□□□□ 0.39
LIG3-205ENST00000585941 GCKRQ14397 625 aa17.48■□□□□ 0.39
LIG3-205ENST00000585941 ERC1Q8IUD2 1116 aa17.48■□□□□ 0.39
LIG3-205ENST00000585941 OTUD7AQ8TE49 926 aaPredicted RBP17.48■□□□□ 0.39
LIG3-205ENST00000585941 STAP2Q9UGK3 403 aa17.48■□□□□ 0.39
LIG3-205ENST00000585941 COL15A1P39059 1388 aa17.48■□□□□ 0.39
LIG3-205ENST00000585941 ADAMTS2O95450 1211 aa17.48■□□□□ 0.39
LIG3-205ENST00000585941 MX1P20591 662 aa17.48■□□□□ 0.39
LIG3-205ENST00000585941 RBM25P49756 843 aaKnown RBP17.48■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms