RNA–Protein interactions for RNA: ENST00000583780.1

SHMT1-210, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 332 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-210ENST00000583780 CYP19A1P11511 503 aaPredicted RBP29.79■■■□□ 2.36
SHMT1-210ENST00000583780 VIRMAQ69YN4 1812 aaKnown RBP29.79■■■□□ 2.36
SHMT1-210ENST00000583780 SLC39A6Q13433 755 aa29.78■■■□□ 2.36
SHMT1-210ENST00000583780 JMYQ8N9B5 988 aa29.78■■■□□ 2.36
SHMT1-210ENST00000583780 CLSPNQ9HAW4 1339 aa29.77■■■□□ 2.36
SHMT1-210ENST00000583780 NFIXQ14938 502 aa29.77■■■□□ 2.36
SHMT1-210ENST00000583780 BCL2L12Q9HB09 334 aa29.77■■■□□ 2.36
SHMT1-210ENST00000583780 NARFQ9UHQ1 456 aa29.77■■■□□ 2.36
SHMT1-210ENST00000583780 PRELPP51888 382 aa29.76■■■□□ 2.35
SHMT1-210ENST00000583780 RNMTO43148 476 aaKnown RBP29.75■■■□□ 2.35
SHMT1-210ENST00000583780 NRXN2Q9P2S2 1712 aa29.75■■■□□ 2.35
SHMT1-210ENST00000583780 CCDC88AQ3V6T2 1871 aa29.74■■■□□ 2.35
SHMT1-210ENST00000583780 RASSF7Q02833 373 aa29.73■■■□□ 2.35
SHMT1-210ENST00000583780 TNRC6CQ9HCJ0 1690 aaKnown RBP29.72■■■□□ 2.35
SHMT1-210ENST00000583780 ZBTB1Q9Y2K1 713 aa29.72■■■□□ 2.35
SHMT1-210ENST00000583780 KNSTRNQ9Y448 316 aa29.72■■■□□ 2.35
SHMT1-210ENST00000583780 AMER1Q5JTC6 1135 aaPredicted RBP29.71■■■□□ 2.35
SHMT1-210ENST00000583780 MRC1P22897 1456 aa29.7■■■□□ 2.35
SHMT1-210ENST00000583780 SERPINB2P05120 415 aa29.7■■■□□ 2.35
SHMT1-210ENST00000583780 COL13A1Q5TAT6 717 aaPredicted RBP29.7■■■□□ 2.35
SHMT1-210ENST00000583780 DLEC1Q9Y238 1755 aa29.69■■■□□ 2.34
SHMT1-210ENST00000583780 COL15A1P39059 1388 aa29.69■■■□□ 2.34
SHMT1-210ENST00000583780 HMOX1P09601 288 aa29.69■■■□□ 2.34
SHMT1-210ENST00000583780 MTHFSDQ2M296 383 aaKnown RBP29.69■■■□□ 2.34
SHMT1-210ENST00000583780 PCNTO95613 3336 aa29.69■■■□□ 2.34
SHMT1-210ENST00000583780 SMC1BQ8NDV3 1235 aa29.68■■■□□ 2.34
SHMT1-210ENST00000583780 ZC3H4Q9UPT8 1303 aaKnown RBP29.68■■■□□ 2.34
SHMT1-210ENST00000583780 LMNB1P20700 586 aa29.67■■■□□ 2.34
SHMT1-210ENST00000583780 VSIG10Q8N0Z9 540 aa29.67■■■□□ 2.34
SHMT1-210ENST00000583780 GLTPD2A6NH11 291 aa29.66■■■□□ 2.34
SHMT1-210ENST00000583780 TTLL6Q8N841 843 aa29.66■■■□□ 2.34
SHMT1-210ENST00000583780 VEGFAP15692 232 aaPredicted RBP29.63■■■□□ 2.33
SHMT1-210ENST00000583780 CANXP27824 592 aaKnown RBP29.63■■■□□ 2.33
SHMT1-210ENST00000583780 EIF5P55010 431 aaKnown RBP29.63■■■□□ 2.33
SHMT1-210ENST00000583780 C2CD5Q86YS7 1000 aa29.63■■■□□ 2.33
SHMT1-210ENST00000583780 CARMIL3Q8ND23 1372 aa29.63■■■□□ 2.33
SHMT1-210ENST00000583780 UBR2Q8IWV8 1755 aa29.62■■■□□ 2.33
SHMT1-210ENST00000583780 POTECB2RU33 542 aa29.62■■■□□ 2.33
SHMT1-210ENST00000583780 NFKBIEO00221 500 aa29.62■■■□□ 2.33
SHMT1-210ENST00000583780 H0YIN7 160 aa29.6■■■□□ 2.33
SHMT1-210ENST00000583780 ANKRD31Q8N7Z5 1873 aa29.59■■■□□ 2.33
SHMT1-210ENST00000583780 PER1O15534 1290 aaPredicted RBP29.58■■■□□ 2.33
SHMT1-210ENST00000583780 BICDL1Q6ZP65 573 aa29.58■■■□□ 2.33
SHMT1-210ENST00000583780 TBC1D9BQ66K14 1250 aa29.57■■■□□ 2.32
SHMT1-210ENST00000583780 DIAPH1O60610 1272 aaKnown RBP29.56■■■□□ 2.32
SHMT1-210ENST00000583780 TIAM2Q8IVF5 1701 aa29.55■■■□□ 2.32
SHMT1-210ENST00000583780 STARD3NLO95772 234 aa29.55■■■□□ 2.32
SHMT1-210ENST00000583780 IL17REQ8NFR9 667 aa29.55■■■□□ 2.32
SHMT1-210ENST00000583780 DICER1Q9UPY3 1922 aaKnown RBP29.55■■■□□ 2.32
SHMT1-210ENST00000583780 ZNF496Q96IT1 587 aaPredicted RBP29.54■■■□□ 2.32
SHMT1-210ENST00000583780 FER1L6Q2WGJ9 1857 aa29.54■■■□□ 2.32
SHMT1-210ENST00000583780 A0A087WZG4 1122 aa29.53■■■□□ 2.32
SHMT1-210ENST00000583780 CCDC24Q8N4L8 307 aa29.52■■■□□ 2.32
SHMT1-210ENST00000583780 BRIP1Q9BX63 1249 aa29.52■■■□□ 2.32
SHMT1-210ENST00000583780 TBC1D2BQ9UPU7 963 aa29.52■■■□□ 2.32
SHMT1-210ENST00000583780 KIF7Q2M1P5 1343 aa29.51■■■□□ 2.32
SHMT1-210ENST00000583780 PRR5LQ6MZQ0 368 aa29.51■■■□□ 2.31
SHMT1-210ENST00000583780 TTC5Q8N0Z6 440 aa29.51■■■□□ 2.31
SHMT1-210ENST00000583780 ZNF622Q969S3 477 aaKnown RBP eCLIP29.51■■■□□ 2.31
SHMT1-210ENST00000583780 C21orf2O43822 256 aa29.5■■■□□ 2.31
SHMT1-210ENST00000583780 ZNF790Q6PG37 636 aa29.5■■■□□ 2.31
SHMT1-210ENST00000583780 HEG1Q9ULI3 1381 aa29.5■■■□□ 2.31
SHMT1-210ENST00000583780 PDE6BP35913 854 aa29.49■■■□□ 2.31
SHMT1-210ENST00000583780 DPY19L2Q6NUT2 758 aa29.49■■■□□ 2.31
SHMT1-210ENST00000583780 PDZRN3Q9UPQ7 1066 aa29.49■■■□□ 2.31
SHMT1-210ENST00000583780 CC2D1BQ5T0F9 858 aaKnown RBP29.48■■■□□ 2.31
SHMT1-210ENST00000583780 TEX13AQ9BXU3 409 aaPredicted RBP29.48■■■□□ 2.31
SHMT1-210ENST00000583780 ZNF219Q9P2Y4 722 aaPredicted RBP29.48■■■□□ 2.31
SHMT1-210ENST00000583780 SIPA1L3O60292 1781 aaPredicted RBP29.48■■■□□ 2.31
SHMT1-210ENST00000583780 IL6STP40189 918 aaPredicted RBP29.47■■■□□ 2.31
SHMT1-210ENST00000583780 TNS4Q8IZW8 715 aa29.47■■■□□ 2.31
SHMT1-210ENST00000583780 COL11A2P13942 1736 aaPredicted RBP29.47■■■□□ 2.31
SHMT1-210ENST00000583780 SLX4Q8IY92 1834 aa29.46■■■□□ 2.31
SHMT1-210ENST00000583780 A1BGP04217 495 aa29.46■■■□□ 2.31
SHMT1-210ENST00000583780 ERFEQ4G0M1 354 aa29.46■■■□□ 2.31
SHMT1-210ENST00000583780 GNAT3A8MTJ3 354 aa29.45■■■□□ 2.31
SHMT1-210ENST00000583780 HSPA1AP0DMV8 641 aaKnown RBP29.45■■■□□ 2.31
SHMT1-210ENST00000583780 HSPA1BP0DMV9 641 aaKnown RBP29.45■■■□□ 2.31
SHMT1-210ENST00000583780 SCN7AQ01118 1682 aa29.44■■■□□ 2.3
SHMT1-210ENST00000583780 CAPN15O75808 1086 aa29.44■■■□□ 2.3
SHMT1-210ENST00000583780 TEFQ10587 303 aa29.44■■■□□ 2.3
SHMT1-210ENST00000583780 COL3A1P02461 1466 aaPredicted RBP29.43■■■□□ 2.3
SHMT1-210ENST00000583780 CCER1Q8TC90 406 aaPredicted RBP29.43■■■□□ 2.3
SHMT1-210ENST00000583780 KCNQ3O43525 872 aa29.42■■■□□ 2.3
SHMT1-210ENST00000583780 CAMTA2O94983 1202 aa29.42■■■□□ 2.3
SHMT1-210ENST00000583780 ZNF330Q9Y3S2 320 aaPredicted RBP29.42■■■□□ 2.3
SHMT1-210ENST00000583780 LTBP3Q9NS15 1303 aa29.42■■■□□ 2.3
SHMT1-210ENST00000583780 GAS2L2Q8NHY3 880 aa29.41■■■□□ 2.3
SHMT1-210ENST00000583780 SETDB2Q96T68 719 aa29.41■■■□□ 2.3
SHMT1-210ENST00000583780 CACNA1SQ13698 1873 aa29.4■■■□□ 2.3
SHMT1-210ENST00000583780 DDNO94850 711 aaPredicted RBP29.4■■■□□ 2.3
SHMT1-210ENST00000583780 SRGNP10124 158 aa29.4■■■□□ 2.3
SHMT1-210ENST00000583780 FMNL2Q96PY5 1086 aa29.4■■■□□ 2.3
SHMT1-210ENST00000583780 U2SURPO15042 1029 aaKnown RBP29.39■■■□□ 2.3
SHMT1-210ENST00000583780 POTEIP0CG38 1075 aa29.39■■■□□ 2.3
SHMT1-210ENST00000583780 POTEJP0CG39 1038 aa29.39■■■□□ 2.3
SHMT1-210ENST00000583780 STYK1Q6J9G0 422 aa29.39■■■□□ 2.3
SHMT1-210ENST00000583780 CEMIPQ8WUJ3 1361 aa29.39■■■□□ 2.29
SHMT1-210ENST00000583780 CNKSR1Q969H4 720 aa29.38■■■□□ 2.29
SHMT1-210ENST00000583780 TAOK3Q9H2K8 898 aa29.38■■■□□ 2.29
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms