RNA–Protein interactions for RNA: ENST00000582892.1

NF1-222, Transcript of neurofibromin 1, human

TSL 4

Gene NF1, Length 462 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NF1-222	ENST00000582892	DSG2	Q14126	1118 aa		10.36	□□□□□ -0.75
NF1-222	ENST00000582892	CCNL1	Q9UK58	526 aa	Predicted RBP	10.36	□□□□□ -0.75
NF1-222	ENST00000582892	MON2	Q7Z3U7	1717 aa		10.36	□□□□□ -0.75
NF1-222	ENST00000582892	PKD1L3	Q7Z443	1732 aa		10.36	□□□□□ -0.75
NF1-222	ENST00000582892	FAM208A	Q9UK61	1670 aa	Known RBP	10.35	□□□□□ -0.75
NF1-222	ENST00000582892	FAM163A	Q96GL9	167 aa	Predicted RBP	10.35	□□□□□ -0.75
NF1-222	ENST00000582892	TSHZ2	Q9NRE2	1034 aa		10.35	□□□□□ -0.75
NF1-222	ENST00000582892	TBC1D12	O60347	775 aa		10.34	□□□□□ -0.75
NF1-222	ENST00000582892	ANKRD36B	Q8N2N9	1353 aa		10.34	□□□□□ -0.75
NF1-222	ENST00000582892	CENPJ	Q9HC77	1338 aa	Predicted RBP	10.33	□□□□□ -0.76
NF1-222	ENST00000582892	C4B	P0C0L5	1744 aa		10.33	□□□□□ -0.76
NF1-222	ENST00000582892	KIF13B	Q9NQT8	1826 aa		10.33	□□□□□ -0.76
NF1-222	ENST00000582892	KCNH5	Q8NCM2	988 aa		10.33	□□□□□ -0.76
NF1-222	ENST00000582892	ANKRD24	Q8TF21	1146 aa		10.33	□□□□□ -0.76
NF1-222	ENST00000582892	BRCA1	P38398	1863 aa	Known RBP	10.33	□□□□□ -0.76
NF1-222	ENST00000582892	HOXB3	P14651	431 aa	Predicted RBP	10.32	□□□□□ -0.76
NF1-222	ENST00000582892	LCE2D	Q5TA82	110 aa	Predicted RBP	10.32	□□□□□ -0.76
NF1-222	ENST00000582892	KCP	Q6ZWJ8	1503 aa		10.32	□□□□□ -0.76
NF1-222	ENST00000582892	PXDNL	A1KZ92	1463 aa		10.31	□□□□□ -0.76
NF1-222	ENST00000582892	HSPA1A	P0DMV8	641 aa	Known RBP	10.31	□□□□□ -0.76
NF1-222	ENST00000582892	HSPA1B	P0DMV9	641 aa	Known RBP	10.31	□□□□□ -0.76
NF1-222	ENST00000582892	RBM46	Q8TBY0	533 aa	Known RBP	10.31	□□□□□ -0.76
NF1-222	ENST00000582892	MEGF6	O75095	1541 aa		10.31	□□□□□ -0.76
NF1-222	ENST00000582892	PHF14	O94880	888 aa		10.3	□□□□□ -0.76
NF1-222	ENST00000582892	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	10.3	□□□□□ -0.76
NF1-222	ENST00000582892	LTV1	Q96GA3	475 aa	Predicted RBP	10.3	□□□□□ -0.76
NF1-222	ENST00000582892	ITGB4	P16144	1822 aa		10.3	□□□□□ -0.76
NF1-222	ENST00000582892	NME9	Q86XW9	330 aa		10.29	□□□□□ -0.76
NF1-222	ENST00000582892	TNRC6C	Q9HCJ0	1690 aa	Known RBP	10.28	□□□□□ -0.76
NF1-222	ENST00000582892	KTN1	Q86UP2	1357 aa	Known RBP	10.28	□□□□□ -0.76
NF1-222	ENST00000582892	USP47	Q96K76	1375 aa		10.28	□□□□□ -0.76
NF1-222	ENST00000582892	SBF1	O95248	1867 aa		10.28	□□□□□ -0.76
NF1-222	ENST00000582892	ST18	O60284	1047 aa		10.28	□□□□□ -0.76
NF1-222	ENST00000582892	PTCD2	Q8WV60	388 aa	Known RBP	10.28	□□□□□ -0.76
NF1-222	ENST00000582892	TTC21A	Q8NDW8	1320 aa		10.28	□□□□□ -0.76
NF1-222	ENST00000582892	MAP2	P11137	1827 aa	Known RBP	10.28	□□□□□ -0.76
NF1-222	ENST00000582892	ARFGEF1	Q9Y6D6	1849 aa		10.28	□□□□□ -0.76
NF1-222	ENST00000582892	HOXB1	P14653	301 aa	Predicted RBP	10.27	□□□□□ -0.77
NF1-222	ENST00000582892	BCS1L	Q9Y276	419 aa		10.27	□□□□□ -0.77
NF1-222	ENST00000582892	CD163L1	Q9NR16	1453 aa		10.26	□□□□□ -0.77
NF1-222	ENST00000582892		A0A0G2JLW4	131 aa		10.26	□□□□□ -0.77
NF1-222	ENST00000582892	C9orf131	Q5VYM1	1079 aa		10.26	□□□□□ -0.77
NF1-222	ENST00000582892	ARHGAP27	Q6ZUM4	889 aa		10.26	□□□□□ -0.77
NF1-222	ENST00000582892	VSIG10	Q8N0Z9	540 aa		10.26	□□□□□ -0.77
NF1-222	ENST00000582892	GTF3C3	Q9Y5Q9	886 aa		10.26	□□□□□ -0.77
NF1-222	ENST00000582892	USP31	Q70CQ4	1352 aa		10.26	□□□□□ -0.77
NF1-222	ENST00000582892	PALLD	Q8WX93	1383 aa		10.26	□□□□□ -0.77
NF1-222	ENST00000582892	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	10.25	□□□□□ -0.77
NF1-222	ENST00000582892	E2F4	Q16254	413 aa		10.25	□□□□□ -0.77
NF1-222	ENST00000582892	RRAGC	Q9HB90	399 aa		10.25	□□□□□ -0.77
NF1-222	ENST00000582892	PCDHGA4	Q9Y5G9	962 aa		10.25	□□□□□ -0.77
NF1-222	ENST00000582892	SBNO2	Q9Y2G9	1366 aa		10.25	□□□□□ -0.77
NF1-222	ENST00000582892	TNRC18	O15417	2968 aa	Predicted RBP	10.24	□□□□□ -0.77
NF1-222	ENST00000582892	FBLN1	P23142	703 aa		10.24	□□□□□ -0.77
NF1-222	ENST00000582892	FSTL1	Q12841	308 aa		10.24	□□□□□ -0.77
NF1-222	ENST00000582892	CAMK2B	Q13554	666 aa		10.24	□□□□□ -0.77
NF1-222	ENST00000582892	C16orf71	Q8IYS4	520 aa	Predicted RBP	10.24	□□□□□ -0.77
NF1-222	ENST00000582892	USHBP1	Q8N6Y0	703 aa		10.24	□□□□□ -0.77
NF1-222	ENST00000582892	ZCRB1	Q8TBF4	217 aa	Known RBP	10.24	□□□□□ -0.77
NF1-222	ENST00000582892	MAP3K9	P80192	1104 aa		10.23	□□□□□ -0.77
NF1-222	ENST00000582892	GPR153	Q6NV75	609 aa		10.23	□□□□□ -0.77
NF1-222	ENST00000582892	OXER1	Q8TDS5	423 aa		10.23	□□□□□ -0.77
NF1-222	ENST00000582892	AK7	Q96M32	723 aa		10.23	□□□□□ -0.77
NF1-222	ENST00000582892	STAC3	Q96MF2	364 aa		10.23	□□□□□ -0.77
NF1-222	ENST00000582892	C10orf71	Q711Q0	1435 aa		10.23	□□□□□ -0.77
NF1-222	ENST00000582892	C4A	P0C0L4	1744 aa		10.22	□□□□□ -0.77
NF1-222	ENST00000582892	CCDC88A	Q3V6T2	1871 aa		10.22	□□□□□ -0.77
NF1-222	ENST00000582892	MMP10	P09238	476 aa		10.22	□□□□□ -0.77
NF1-222	ENST00000582892	DPEP1	P16444	411 aa		10.22	□□□□□ -0.77
NF1-222	ENST00000582892	LINC00116	Q8NCU8	138 aa		10.22	□□□□□ -0.77
NF1-222	ENST00000582892	FLAD1	Q8NFF5	587 aa		10.22	□□□□□ -0.77
NF1-222	ENST00000582892	EVC2	Q86UK5	1308 aa		10.22	□□□□□ -0.77
NF1-222	ENST00000582892	FCHSD2	O94868	740 aa		10.21	□□□□□ -0.77
NF1-222	ENST00000582892	EMP3	P54852	163 aa		10.21	□□□□□ -0.77
NF1-222	ENST00000582892	FAM161A	Q3B820	660 aa		10.21	□□□□□ -0.77
NF1-222	ENST00000582892	ARSI	Q5FYB1	569 aa		10.21	□□□□□ -0.77
NF1-222	ENST00000582892	MPRIP	Q6WCQ1	1025 aa		10.21	□□□□□ -0.77
NF1-222	ENST00000582892	IP6K1	Q92551	441 aa		10.21	□□□□□ -0.77
NF1-222	ENST00000582892	TIAM2	Q8IVF5	1701 aa		10.2	□□□□□ -0.78
NF1-222	ENST00000582892	PLEKHG2	Q9H7P9	1386 aa		10.2	□□□□□ -0.78
NF1-222	ENST00000582892	RNF181	Q9P0P0	153 aa		10.2	□□□□□ -0.78
NF1-222	ENST00000582892	TONSL	Q96HA7	1378 aa		10.19	□□□□□ -0.78
NF1-222	ENST00000582892	FOXN1	O15353	648 aa		10.19	□□□□□ -0.78
NF1-222	ENST00000582892	KCNA3	P22001	575 aa		10.19	□□□□□ -0.78
NF1-222	ENST00000582892	SMC1B	Q8NDV3	1235 aa		10.19	□□□□□ -0.78
NF1-222	ENST00000582892	MAP3K19	Q56UN5	1328 aa		10.18	□□□□□ -0.78
NF1-222	ENST00000582892	GNPAT	O15228	680 aa		10.18	□□□□□ -0.78
NF1-222	ENST00000582892	SSFA2	P28290	1259 aa		10.18	□□□□□ -0.78
NF1-222	ENST00000582892	ITPK1	Q13572	414 aa		10.18	□□□□□ -0.78
NF1-222	ENST00000582892	NBPF6	Q5VWK0	638 aa		10.18	□□□□□ -0.78
NF1-222	ENST00000582892	NBPF4	Q96M43	638 aa		10.18	□□□□□ -0.78
NF1-222	ENST00000582892	SIN3A	Q96ST3	1273 aa		10.18	□□□□□ -0.78
NF1-222	ENST00000582892	KDM2B	Q8NHM5	1336 aa		10.17	□□□□□ -0.78
NF1-222	ENST00000582892	CYP27B1	O15528	508 aa		10.17	□□□□□ -0.78
NF1-222	ENST00000582892	HOXC9	P31274	260 aa		10.17	□□□□□ -0.78
NF1-222	ENST00000582892	RASSF7	Q02833	373 aa		10.17	□□□□□ -0.78
NF1-222	ENST00000582892	MKRN1	Q9UHC7	482 aa	Known RBP	10.17	□□□□□ -0.78
NF1-222	ENST00000582892	NSD3	Q9BZ95	1437 aa		10.16	□□□□□ -0.78
NF1-222	ENST00000582892	PDE4DIP	Q5VU43	2346 aa		10.16	□□□□□ -0.78
NF1-222	ENST00000582892	MYH14	Q7Z406	1995 aa	Known RBP	10.16	□□□□□ -0.78

Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms