RNA–Protein interactions for RNA: ENST00000582448.5

SS18-221, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 585 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-221ENST00000582448 MS4A1P11836 297 aa14.55□□□□□ -0.08
SS18-221ENST00000582448 USP46P62068 366 aa14.55□□□□□ -0.08
SS18-221ENST00000582448 FAM160A2Q8N612 972 aaPredicted RBP14.55□□□□□ -0.08
SS18-221ENST00000582448 BTG4Q9NY30 223 aa14.55□□□□□ -0.08
SS18-221ENST00000582448 TIMELESSQ9UNS1 1208 aa14.55□□□□□ -0.08
SS18-221ENST00000582448 TNS3Q68CZ2 1445 aa14.55□□□□□ -0.08
SS18-221ENST00000582448 FMNL1O95466 1100 aaPredicted RBP14.54□□□□□ -0.08
SS18-221ENST00000582448 SIRT1Q96EB6 747 aa14.54□□□□□ -0.08
SS18-221ENST00000582448 C14orf93Q9H972 538 aaKnown RBP14.54□□□□□ -0.08
SS18-221ENST00000582448 SALL2Q9Y467 1007 aaPredicted RBP14.54□□□□□ -0.08
SS18-221ENST00000582448 BRWD3Q6RI45 1802 aa14.53□□□□□ -0.08
SS18-221ENST00000582448 USP32Q8NFA0 1604 aa14.53□□□□□ -0.08
SS18-221ENST00000582448 SPATA31E1Q6ZUB1 1445 aa14.53□□□□□ -0.08
SS18-221ENST00000582448 NUTM1Q86Y26 1132 aa14.53□□□□□ -0.08
SS18-221ENST00000582448 EMID1Q96A84 441 aaPredicted RBP14.53□□□□□ -0.08
SS18-221ENST00000582448 TNKS1BP1Q9C0C2 1729 aaKnown RBP14.52□□□□□ -0.08
SS18-221ENST00000582448 SBNO1A3KN83 1393 aa14.52□□□□□ -0.08
SS18-221ENST00000582448 SPIRE2Q8WWL2 714 aa14.52□□□□□ -0.09
SS18-221ENST00000582448 HIRIP3Q9BW71 556 aaPredicted RBP14.52□□□□□ -0.09
SS18-221ENST00000582448 PIK3C2GO75747 1445 aa14.51□□□□□ -0.09
SS18-221ENST00000582448 ARHGEF10O15013 1369 aa14.51□□□□□ -0.09
SS18-221ENST00000582448 BEGAINQ9BUH8 593 aa14.51□□□□□ -0.09
SS18-221ENST00000582448 PRDM9Q9NQV7 894 aa14.51□□□□□ -0.09
SS18-221ENST00000582448 FMN2Q9NZ56 1722 aa14.51□□□□□ -0.09
SS18-221ENST00000582448 KIF1AQ12756 1690 aa14.5□□□□□ -0.09
SS18-221ENST00000582448 NEUROD1Q13562 356 aa14.5□□□□□ -0.09
SS18-221ENST00000582448 R3HDM1Q15032 1099 aaKnown RBP14.5□□□□□ -0.09
SS18-221ENST00000582448 ANKLE1Q8NAG6 615 aa14.5□□□□□ -0.09
SS18-221ENST00000582448 TRAK1Q9UPV9 953 aa14.5□□□□□ -0.09
SS18-221ENST00000582448 RGPD8O14715 1765 aaPredicted RBP14.48□□□□□ -0.09
SS18-221ENST00000582448 PLA2G2CQ5R387 149 aa14.48□□□□□ -0.09
SS18-221ENST00000582448 NGDNQ8NEJ9 315 aaKnown RBP14.48□□□□□ -0.09
SS18-221ENST00000582448 NRXN1Q9ULB1 1477 aa14.48□□□□□ -0.09
SS18-221ENST00000582448 GPRASP1Q5JY77 1395 aa14.47□□□□□ -0.09
SS18-221ENST00000582448 EZH2Q15910 746 aaKnown RBP14.47□□□□□ -0.09
SS18-221ENST00000582448 Q3C1V9 767 aa14.47□□□□□ -0.09
SS18-221ENST00000582448 V9GY48 417 aaPredicted RBP14.47□□□□□ -0.09
SS18-221ENST00000582448 TONSLQ96HA7 1378 aa14.47□□□□□ -0.09
SS18-221ENST00000582448 KNDC1Q76NI1 1749 aa14.46□□□□□ -0.09
SS18-221ENST00000582448 NDUFV2P19404 249 aa14.46□□□□□ -0.09
SS18-221ENST00000582448 SYMPKQ92797 1274 aaKnown RBP14.46□□□□□ -0.09
SS18-221ENST00000582448 PRDM11Q9NQV5 511 aa14.46□□□□□ -0.09
SS18-221ENST00000582448 STRN4Q9NRL3 753 aa14.46□□□□□ -0.09
SS18-221ENST00000582448 PCDHGC3Q9UN70 934 aa14.46□□□□□ -0.09
SS18-221ENST00000582448 MOXD2PA6NHM9 499 aa14.45□□□□□ -0.1
SS18-221ENST00000582448 TRIM37O94972 964 aa14.45□□□□□ -0.1
SS18-221ENST00000582448 MSS51Q4VC12 460 aa14.45□□□□□ -0.1
SS18-221ENST00000582448 PLCH1Q4KWH8 1693 aa14.45□□□□□ -0.1
SS18-221ENST00000582448 SPATA31A5Q5VU36 1347 aa14.44□□□□□ -0.1
SS18-221ENST00000582448 SPATA31A7Q8IWB4 1347 aa14.44□□□□□ -0.1
SS18-221ENST00000582448 CHRNA2Q15822 529 aa14.44□□□□□ -0.1
SS18-221ENST00000582448 SIN3AQ96ST3 1273 aa14.44□□□□□ -0.1
SS18-221ENST00000582448 IRX2Q9BZI1 471 aaPredicted RBP14.44□□□□□ -0.1
SS18-221ENST00000582448 USP35Q9P2H5 1018 aa14.44□□□□□ -0.1
SS18-221ENST00000582448 IFT172Q9UG01 1749 aa14.44□□□□□ -0.1
SS18-221ENST00000582448 FDX1P10109 184 aa14.43□□□□□ -0.1
SS18-221ENST00000582448 NUTM2GQ5VZR2 741 aa14.43□□□□□ -0.1
SS18-221ENST00000582448 LIAT1Q6ZQX7 453 aa14.43□□□□□ -0.1
SS18-221ENST00000582448 TBC1D2Q9BYX2 928 aa14.43□□□□□ -0.1
SS18-221ENST00000582448 NWD2Q9ULI1 1742 aa14.43□□□□□ -0.1
SS18-221ENST00000582448 PRR36Q9H6K5 1346 aa14.42□□□□□ -0.1
SS18-221ENST00000582448 WASLO00401 505 aaPredicted RBP14.42□□□□□ -0.1
SS18-221ENST00000582448 APBA3O96018 575 aa14.42□□□□□ -0.1
SS18-221ENST00000582448 ZC3H6P61129 1189 aaKnown RBP14.42□□□□□ -0.1
SS18-221ENST00000582448 USB1Q9BQ65 265 aaKnown RBP14.42□□□□□ -0.1
SS18-221ENST00000582448 ANKARQ7Z5J8 1434 aa14.41□□□□□ -0.1
SS18-221ENST00000582448 SLC19A1P41440 591 aa14.41□□□□□ -0.1
SS18-221ENST00000582448 EVA1CP58658 441 aa14.41□□□□□ -0.1
SS18-221ENST00000582448 FCF1Q9Y324 198 aaKnown RBP14.41□□□□□ -0.1
SS18-221ENST00000582448 LRP5O75197 1615 aa14.41□□□□□ -0.1
SS18-221ENST00000582448 FAM196AQ6ZSG2 479 aa14.4□□□□□ -0.1
SS18-221ENST00000582448 PDE3BQ13370 1112 aa14.39□□□□□ -0.11
SS18-221ENST00000582448 DCAF11Q8TEB1 546 aa14.39□□□□□ -0.11
SS18-221ENST00000582448 CAMKK2Q96RR4 588 aa14.39□□□□□ -0.11
SS18-221ENST00000582448 SPATA31A1Q5TZJ5 1347 aa14.39□□□□□ -0.11
SS18-221ENST00000582448 ABCA3Q99758 1704 aa14.38□□□□□ -0.11
SS18-221ENST00000582448 KIAA0232Q92628 1395 aa14.38□□□□□ -0.11
SS18-221ENST00000582448 EIF3AQ14152 1382 aaKnown RBP14.37□□□□□ -0.11
SS18-221ENST00000582448 MMP16P51512 607 aa14.37□□□□□ -0.11
SS18-221ENST00000582448 NUDT16Q96DE0 195 aaKnown RBP14.37□□□□□ -0.11
SS18-221ENST00000582448 GPBP1L1Q9HC44 474 aaPredicted RBP14.37□□□□□ -0.11
SS18-221ENST00000582448 COL14A1Q05707 1796 aaKnown RBP14.37□□□□□ -0.11
SS18-221ENST00000582448 NRAPQ86VF7 1730 aa14.36□□□□□ -0.11
SS18-221ENST00000582448 SPRYD7Q5W111 196 aa14.36□□□□□ -0.11
SS18-221ENST00000582448 DLC1Q96QB1 1528 aa14.36□□□□□ -0.11
SS18-221ENST00000582448 NBPF8Q3BBV2 869 aa14.35□□□□□ -0.11
SS18-221ENST00000582448 NBPF14Q5TI25 921 aa14.35□□□□□ -0.11
SS18-221ENST00000582448 DXOO77932 396 aaKnown RBP14.34□□□□□ -0.11
SS18-221ENST00000582448 YY1P25490 414 aa14.34□□□□□ -0.11
SS18-221ENST00000582448 RSBN1LQ6PCB5 846 aaPredicted RBP14.34□□□□□ -0.11
SS18-221ENST00000582448 CDK19Q9BWU1 502 aa14.34□□□□□ -0.11
SS18-221ENST00000582448 PPP1R1BQ9UD71 204 aaPredicted RBP14.34□□□□□ -0.11
SS18-221ENST00000582448 TRPM3Q9HCF6 1732 aaPredicted RBP14.34□□□□□ -0.11
SS18-221ENST00000582448 RGPD1P0DJD0 1748 aa14.33□□□□□ -0.12
SS18-221ENST00000582448 TULP4Q9NRJ4 1543 aa14.33□□□□□ -0.12
SS18-221ENST00000582448 ZBTB7CA1YPR0 619 aa14.33□□□□□ -0.12
SS18-221ENST00000582448 C6orf229H3BNL8 230 aa14.33□□□□□ -0.12
SS18-221ENST00000582448 LARP1Q6PKG0 1096 aaKnown RBP14.33□□□□□ -0.12
SS18-221ENST00000582448 RETREG3Q86VR2 466 aa14.33□□□□□ -0.12
SS18-221ENST00000582448 PCDHB15Q9Y5E8 787 aa14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms