RNA–Protein interactions for RNA: ENST00000582352.1

SHMT1-208, Transcript of serine hydroxymethyltransferase 1, humanhuman

Gene SHMT1, Length 2,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-208ENST00000582352 TMEM2Q9UHN6 1383 aa14.74□□□□□ -0.05
SHMT1-208ENST00000582352 EYA1Q99502 592 aa14.73□□□□□ -0.05
SHMT1-208ENST00000582352 RAD50Q92878 1312 aa14.73□□□□□ -0.05
SHMT1-208ENST00000582352 GNAT3A8MTJ3 354 aa14.73□□□□□ -0.05
SHMT1-208ENST00000582352 DYNC1I1O14576 645 aa14.73□□□□□ -0.05
SHMT1-208ENST00000582352 TNRQ92752 1358 aa14.73□□□□□ -0.05
SHMT1-208ENST00000582352 CCDC183Q5T5S1 534 aa14.73□□□□□ -0.05
SHMT1-208ENST00000582352 NUTM1Q86Y26 1132 aa14.73□□□□□ -0.05
SHMT1-208ENST00000582352 IL25Q9H293 177 aa14.73□□□□□ -0.05
SHMT1-208ENST00000582352 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP14.73□□□□□ -0.05
SHMT1-208ENST00000582352 RPAP1Q9BWH6 1393 aaPredicted RBP14.72□□□□□ -0.05
SHMT1-208ENST00000582352 TCHHQ07283 1943 aa14.72□□□□□ -0.05
SHMT1-208ENST00000582352 ADAMTS13Q76LX8 1427 aa14.72□□□□□ -0.05
SHMT1-208ENST00000582352 TMEM87AQ8NBN3 555 aa14.72□□□□□ -0.05
SHMT1-208ENST00000582352 USP44Q9H0E7 712 aa14.72□□□□□ -0.05
SHMT1-208ENST00000582352 RAB11FIP3O75154 756 aa14.72□□□□□ -0.05
SHMT1-208ENST00000582352 UBR1Q8IWV7 1749 aa14.71□□□□□ -0.05
SHMT1-208ENST00000582352 SURF6O75683 361 aaKnown RBP14.71□□□□□ -0.05
SHMT1-208ENST00000582352 UVSSAQ2YD98 709 aa14.71□□□□□ -0.05
SHMT1-208ENST00000582352 SSH3Q8TE77 659 aa14.71□□□□□ -0.05
SHMT1-208ENST00000582352 MAP4K4O95819 1239 aaPredicted RBP14.71□□□□□ -0.06
SHMT1-208ENST00000582352 MTERF4Q7Z6M4 381 aaKnown RBP14.71□□□□□ -0.06
SHMT1-208ENST00000582352 MAP3K5Q99683 1374 aa14.7□□□□□ -0.06
SHMT1-208ENST00000582352 PLEKHG5O94827 1062 aa14.7□□□□□ -0.06
SHMT1-208ENST00000582352 CNTROBQ8N137 903 aa14.7□□□□□ -0.06
SHMT1-208ENST00000582352 CNPY2Q9Y2B0 182 aa14.7□□□□□ -0.06
SHMT1-208ENST00000582352 ZSCAN21Q9Y5A6 473 aaPredicted RBP14.7□□□□□ -0.06
SHMT1-208ENST00000582352 SGSM2O43147 1006 aa14.7□□□□□ -0.06
SHMT1-208ENST00000582352 ZSCAN22P10073 491 aaPredicted RBP14.7□□□□□ -0.06
SHMT1-208ENST00000582352 DNTTIP2Q5QJE6 756 aaKnown RBP14.7□□□□□ -0.06
SHMT1-208ENST00000582352 LETM1O95202 739 aaPredicted RBP14.69□□□□□ -0.06
SHMT1-208ENST00000582352 HDGFL1Q5TGJ6 251 aa14.69□□□□□ -0.06
SHMT1-208ENST00000582352 PPP1R42Q7Z4L9 355 aa14.69□□□□□ -0.06
SHMT1-208ENST00000582352 USP25Q9UHP3 1055 aa14.69□□□□□ -0.06
SHMT1-208ENST00000582352 ATP6V1DQ9Y5K8 247 aa14.69□□□□□ -0.06
SHMT1-208ENST00000582352 SNX14Q9Y5W7 946 aa14.69□□□□□ -0.06
SHMT1-208ENST00000582352 UBE2HP62256 183 aa14.69□□□□□ -0.06
SHMT1-208ENST00000582352 CYB5RLQ6IPT4 315 aa14.69□□□□□ -0.06
SHMT1-208ENST00000582352 NGDNQ8NEJ9 315 aaKnown RBP14.69□□□□□ -0.06
SHMT1-208ENST00000582352 PI4K2BQ8TCG2 481 aa14.69□□□□□ -0.06
SHMT1-208ENST00000582352 RHPN1Q8TCX5 695 aa14.69□□□□□ -0.06
SHMT1-208ENST00000582352 STX6O43752 255 aa14.68□□□□□ -0.06
SHMT1-208ENST00000582352 AK2P54819 239 aa14.68□□□□□ -0.06
SHMT1-208ENST00000582352 TPRNQ4KMQ1 711 aa14.68□□□□□ -0.06
SHMT1-208ENST00000582352 KIF1BPQ96EK5 621 aa14.68□□□□□ -0.06
SHMT1-208ENST00000582352 LIMCH1Q9UPQ0 1083 aa14.68□□□□□ -0.06
SHMT1-208ENST00000582352 SRGAP3O43295 1099 aa14.68□□□□□ -0.06
SHMT1-208ENST00000582352 SMC3Q9UQE7 1217 aa14.68□□□□□ -0.06
SHMT1-208ENST00000582352 PTPRUQ92729 1446 aa14.68□□□□□ -0.06
SHMT1-208ENST00000582352 TAF7Q15545 349 aaPredicted RBP14.68□□□□□ -0.06
SHMT1-208ENST00000582352 TTC14Q96N46 770 aa14.68□□□□□ -0.06
SHMT1-208ENST00000582352 BABAM1Q9NWV8 329 aa14.68□□□□□ -0.06
SHMT1-208ENST00000582352 PIK3C2AO00443 1686 aa14.68□□□□□ -0.06
SHMT1-208ENST00000582352 PLEKHG1Q9ULL1 1385 aa14.67□□□□□ -0.06
SHMT1-208ENST00000582352 FIBPO43427 364 aa14.67□□□□□ -0.06
SHMT1-208ENST00000582352 HCLS1P14317 486 aaPredicted RBP14.67□□□□□ -0.06
SHMT1-208ENST00000582352 SYT1P21579 422 aa14.67□□□□□ -0.06
SHMT1-208ENST00000582352 POLA2Q14181 598 aa14.67□□□□□ -0.06
SHMT1-208ENST00000582352 LSG1Q9H089 658 aaKnown RBP14.67□□□□□ -0.06
SHMT1-208ENST00000582352 F13A1P00488 732 aa14.67□□□□□ -0.06
SHMT1-208ENST00000582352 ADCY5O95622 1261 aa14.66□□□□□ -0.06
SHMT1-208ENST00000582352 CWC27Q6UX04 472 aaKnown RBP14.66□□□□□ -0.06
SHMT1-208ENST00000582352 PIBF1Q8WXW3 757 aa14.66□□□□□ -0.06
SHMT1-208ENST00000582352 PHAXQ9H814 394 aaKnown RBP14.66□□□□□ -0.06
SHMT1-208ENST00000582352 RUFY3Q7L099 469 aa14.66□□□□□ -0.06
SHMT1-208ENST00000582352 IL17REQ8NFR9 667 aa14.66□□□□□ -0.06
SHMT1-208ENST00000582352 ZBTB7CA1YPR0 619 aa14.65□□□□□ -0.06
SHMT1-208ENST00000582352 CASTP20810 708 aaKnown RBP14.65□□□□□ -0.06
SHMT1-208ENST00000582352 RASEFQ8IZ41 740 aa14.65□□□□□ -0.06
SHMT1-208ENST00000582352 MPNDQ8N594 471 aa14.65□□□□□ -0.06
SHMT1-208ENST00000582352 LARP6Q9BRS8 491 aaKnown RBP14.65□□□□□ -0.06
SHMT1-208ENST00000582352 DIAPH3Q9NSV4 1193 aa14.65□□□□□ -0.06
SHMT1-208ENST00000582352 HSP90AB4PQ58FF6 505 aa14.65□□□□□ -0.06
SHMT1-208ENST00000582352 SPG7Q9UQ90 795 aa14.65□□□□□ -0.06
SHMT1-208ENST00000582352 NLRP6P59044 892 aa14.64□□□□□ -0.07
SHMT1-208ENST00000582352 OS9Q13438 667 aaPredicted RBP14.64□□□□□ -0.07
SHMT1-208ENST00000582352 CRYBG1Q9Y4K1 1723 aa14.64□□□□□ -0.07
SHMT1-208ENST00000582352 HOXC9P31274 260 aa14.64□□□□□ -0.07
SHMT1-208ENST00000582352 MYRIPQ8NFW9 859 aa14.64□□□□□ -0.07
SHMT1-208ENST00000582352 RUFY2Q8WXA3 655 aa14.64□□□□□ -0.07
SHMT1-208ENST00000582352 ZNF830Q96NB3 372 aaPredicted RBP14.64□□□□□ -0.07
SHMT1-208ENST00000582352 PRIMPOLQ96LW4 560 aa14.63□□□□□ -0.07
SHMT1-208ENST00000582352 SLC26A8Q96RN1 970 aa14.63□□□□□ -0.07
SHMT1-208ENST00000582352 DIP2AQ14689 1571 aa14.63□□□□□ -0.07
SHMT1-208ENST00000582352 NWD1Q149M9 1564 aa14.63□□□□□ -0.07
SHMT1-208ENST00000582352 RGPD8O14715 1765 aaPredicted RBP14.63□□□□□ -0.07
SHMT1-208ENST00000582352 GLRX3O76003 335 aaKnown RBP14.63□□□□□ -0.07
SHMT1-208ENST00000582352 HMGN5P82970 282 aaKnown RBP14.63□□□□□ -0.07
SHMT1-208ENST00000582352 NOLC1Q14978 699 aaKnown RBP eCLIP14.63□□□□□ -0.07
SHMT1-208ENST00000582352 TTC12Q9H892 705 aaPredicted RBP14.63□□□□□ -0.07
SHMT1-208ENST00000582352 TTC41PQ6P2S7 1318 aa14.63□□□□□ -0.07
SHMT1-208ENST00000582352 NBPF7P0C2Y1 421 aaPredicted RBP14.62□□□□□ -0.07
SHMT1-208ENST00000582352 EIF2S2P20042 333 aaKnown RBP14.62□□□□□ -0.07
SHMT1-208ENST00000582352 LTKP29376 864 aa14.62□□□□□ -0.07
SHMT1-208ENST00000582352 PLCB2Q00722 1185 aa14.62□□□□□ -0.07
SHMT1-208ENST00000582352 CCDC83Q8IWF9 413 aa14.62□□□□□ -0.07
SHMT1-208ENST00000582352 LTV1Q96GA3 475 aaPredicted RBP14.62□□□□□ -0.07
SHMT1-208ENST00000582352 ARID3AQ99856 593 aa14.62□□□□□ -0.07
SHMT1-208ENST00000582352 KDM4AO75164 1064 aa14.62□□□□□ -0.07
SHMT1-208ENST00000582352 CPA1P15085 419 aa14.62□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms