RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 EIF2S2P20042 333 aaKnown RBP13.34□□□□□ -0.27
SS18-217ENST00000580958 NKX1-1Q15270 411 aaPredicted RBP13.34□□□□□ -0.27
SS18-217ENST00000580958 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.33□□□□□ -0.27
SS18-217ENST00000580958 GIGYF1O75420 1035 aaPredicted RBP13.33□□□□□ -0.28
SS18-217ENST00000580958 IGHDP01880 384 aa13.33□□□□□ -0.28
SS18-217ENST00000580958 ZNF790Q6PG37 636 aa13.33□□□□□ -0.28
SS18-217ENST00000580958 SPATA31A1Q5TZJ5 1347 aa13.33□□□□□ -0.28
SS18-217ENST00000580958 DOT1LQ8TEK3 1739 aa13.33□□□□□ -0.28
SS18-217ENST00000580958 LRP6O75581 1613 aa13.32□□□□□ -0.28
SS18-217ENST00000580958 ERVV-2B6SEH9 535 aa13.32□□□□□ -0.28
SS18-217ENST00000580958 FLIIQ13045 1269 aa13.32□□□□□ -0.28
SS18-217ENST00000580958 INTS3Q68E01 1043 aaKnown RBP13.32□□□□□ -0.28
SS18-217ENST00000580958 CHMP4AQ9BY43 222 aa13.32□□□□□ -0.28
SS18-217ENST00000580958 ZBTB40Q9NUA8 1239 aa13.32□□□□□ -0.28
SS18-217ENST00000580958 TNS2Q63HR2 1409 aa13.31□□□□□ -0.28
SS18-217ENST00000580958 PRAMEF22A3QJZ6 481 aa13.31□□□□□ -0.28
SS18-217ENST00000580958 F6X3S4 739 aa13.31□□□□□ -0.28
SS18-217ENST00000580958 ZBTB7BO15156 539 aaPredicted RBP13.31□□□□□ -0.28
SS18-217ENST00000580958 TTC5Q8N0Z6 440 aa13.31□□□□□ -0.28
SS18-217ENST00000580958 CHMP4BQ9H444 224 aaKnown RBP13.31□□□□□ -0.28
SS18-217ENST00000580958 CHPF2Q9P2E5 772 aa13.31□□□□□ -0.28
SS18-217ENST00000580958 ANXA1P04083 346 aa13.3□□□□□ -0.28
SS18-217ENST00000580958 PRR29P0C7W0 189 aa13.3□□□□□ -0.28
SS18-217ENST00000580958 HSPA1LP34931 641 aa13.3□□□□□ -0.28
SS18-217ENST00000580958 FKBP5Q13451 457 aaPredicted RBP13.3□□□□□ -0.28
SS18-217ENST00000580958 C8orf37Q96NL8 207 aa13.3□□□□□ -0.28
SS18-217ENST00000580958 SPATA31A5Q5VU36 1347 aa13.3□□□□□ -0.28
SS18-217ENST00000580958 SPATA31A7Q8IWB4 1347 aa13.3□□□□□ -0.28
SS18-217ENST00000580958 PXDNLA1KZ92 1463 aa13.29□□□□□ -0.28
SS18-217ENST00000580958 KCPQ6ZWJ8 1503 aa13.29□□□□□ -0.28
SS18-217ENST00000580958 EXOC5O00471 708 aa13.29□□□□□ -0.28
SS18-217ENST00000580958 SLC4A10Q6U841 1118 aa13.29□□□□□ -0.28
SS18-217ENST00000580958 SKAP1Q86WV1 359 aa13.29□□□□□ -0.28
SS18-217ENST00000580958 ZNF496Q96IT1 587 aaPredicted RBP13.29□□□□□ -0.28
SS18-217ENST00000580958 FMNL2Q96PY5 1086 aa13.29□□□□□ -0.28
SS18-217ENST00000580958 CDCA7Q9BWT1 371 aaPredicted RBP13.29□□□□□ -0.28
SS18-217ENST00000580958 RWDD1Q9H446 243 aaPredicted RBP13.29□□□□□ -0.28
SS18-217ENST00000580958 PHAXQ9H814 394 aaKnown RBP13.29□□□□□ -0.28
SS18-217ENST00000580958 TSHZ2Q9NRE2 1034 aa13.29□□□□□ -0.28
SS18-217ENST00000580958 THRAP3Q9Y2W1 955 aaKnown RBP13.29□□□□□ -0.28
SS18-217ENST00000580958 CCDC9Q9Y3X0 531 aaKnown RBP13.29□□□□□ -0.28
SS18-217ENST00000580958 SPATA31A6Q5VVP1 1343 aa13.29□□□□□ -0.28
SS18-217ENST00000580958 UNC5CLQ8IV45 518 aa13.28□□□□□ -0.28
SS18-217ENST00000580958 NGLY1Q96IV0 654 aa13.28□□□□□ -0.28
SS18-217ENST00000580958 C1orf115Q9H7X2 142 aa13.28□□□□□ -0.28
SS18-217ENST00000580958 BCL9LQ86UU0 1499 aa13.28□□□□□ -0.28
SS18-217ENST00000580958 CCT4P50991 539 aaKnown RBP13.27□□□□□ -0.29
SS18-217ENST00000580958 PROSER3Q2NL68 480 aa13.27□□□□□ -0.29
SS18-217ENST00000580958 TMOD3Q9NYL9 352 aa13.27□□□□□ -0.29
SS18-217ENST00000580958 DBF4Q9UBU7 674 aaPredicted RBP13.27□□□□□ -0.29
SS18-217ENST00000580958 AFDNP55196 1824 aaKnown RBP13.27□□□□□ -0.29
SS18-217ENST00000580958 SNRPA1P09661 255 aaKnown RBP13.26□□□□□ -0.29
SS18-217ENST00000580958 HDAC1Q13547 482 aaPredicted RBP13.26□□□□□ -0.29
SS18-217ENST00000580958 ARFGEF2Q9Y6D5 1785 aa13.25□□□□□ -0.29
SS18-217ENST00000580958 VPS72Q15906 364 aa13.25□□□□□ -0.29
SS18-217ENST00000580958 DDB1Q16531 1140 aa13.25□□□□□ -0.29
SS18-217ENST00000580958 BARGINQ6ZT62 677 aa13.25□□□□□ -0.29
SS18-217ENST00000580958 MEIS3Q99687 375 aa13.25□□□□□ -0.29
SS18-217ENST00000580958 DDX21Q9NR30 783 aaKnown RBP eCLIP13.25□□□□□ -0.29
SS18-217ENST00000580958 HYPKQ9NX55 129 aa13.25□□□□□ -0.29
SS18-217ENST00000580958 ADCY9O60503 1353 aa13.24□□□□□ -0.29
SS18-217ENST00000580958 PDIA6Q15084 440 aa13.24□□□□□ -0.29
SS18-217ENST00000580958 MEX3CQ5U5Q3 659 aaKnown RBP13.24□□□□□ -0.29
SS18-217ENST00000580958 FNBP4Q8N3X1 1017 aaPredicted RBP13.24□□□□□ -0.29
SS18-217ENST00000580958 USP16Q9Y5T5 823 aa13.24□□□□□ -0.29
SS18-217ENST00000580958 TJP1Q07157 1748 aa13.23□□□□□ -0.29
SS18-217ENST00000580958 NUP188Q5SRE5 1749 aa13.23□□□□□ -0.29
SS18-217ENST00000580958 DNAAF4Q8WXU2 420 aa13.23□□□□□ -0.29
SS18-217ENST00000580958 PIGBQ92521 554 aa13.23□□□□□ -0.29
SS18-217ENST00000580958 USP21Q9UK80 565 aa13.23□□□□□ -0.29
SS18-217ENST00000580958 PDZRN3Q9UPQ7 1066 aa13.23□□□□□ -0.29
SS18-217ENST00000580958 THSD7AQ9UPZ6 1657 aa13.23□□□□□ -0.29
SS18-217ENST00000580958 BCL9O00512 1426 aa13.22□□□□□ -0.29
SS18-217ENST00000580958 ATP10DQ9P241 1426 aa13.22□□□□□ -0.29
SS18-217ENST00000580958 PI4KAP2A4QPH2 592 aa13.22□□□□□ -0.29
SS18-217ENST00000580958 MYL6BP14649 208 aa13.22□□□□□ -0.29
SS18-217ENST00000580958 RGS3P49796 1198 aa13.22□□□□□ -0.29
SS18-217ENST00000580958 CHADLQ6NUI6 762 aa13.22□□□□□ -0.29
SS18-217ENST00000580958 PI4KAP1Q8N8J0 262 aa13.22□□□□□ -0.29
SS18-217ENST00000580958 MARCH10Q8NA82 808 aaPredicted RBP13.22□□□□□ -0.29
SS18-217ENST00000580958 PTCD1O75127 700 aaKnown RBP13.21□□□□□ -0.29
SS18-217ENST00000580958 PIP4K2AP48426 406 aaPredicted RBP13.21□□□□□ -0.29
SS18-217ENST00000580958 FAM98CQ17RN3 349 aaKnown RBP13.21□□□□□ -0.29
SS18-217ENST00000580958 SIRT2Q8IXJ6 389 aa13.21□□□□□ -0.29
SS18-217ENST00000580958 SRCIN1Q9C0H9 1055 aa13.21□□□□□ -0.29
SS18-217ENST00000580958 ASAP1Q9ULH1 1129 aa13.21□□□□□ -0.29
SS18-217ENST00000580958 DDX58O95786 925 aaKnown RBP13.2□□□□□ -0.3
SS18-217ENST00000580958 AIMP1Q12904 312 aaKnown RBP13.2□□□□□ -0.3
SS18-217ENST00000580958 KSR2Q6VAB6 950 aa13.2□□□□□ -0.3
SS18-217ENST00000580958 SMC5Q8IY18 1101 aa13.2□□□□□ -0.3
SS18-217ENST00000580958 ANKRD44Q8N8A2 993 aa13.2□□□□□ -0.3
SS18-217ENST00000580958 XAGE3Q8WTP9 111 aa13.2□□□□□ -0.3
SS18-217ENST00000580958 ATG3Q9NT62 314 aa13.2□□□□□ -0.3
SS18-217ENST00000580958 MAP3K2Q9Y2U5 619 aa13.2□□□□□ -0.3
SS18-217ENST00000580958 AFF2P51816 1311 aa13.19□□□□□ -0.3
SS18-217ENST00000580958 ERBB4Q15303 1308 aa13.19□□□□□ -0.3
SS18-217ENST00000580958 GNAI3P08754 354 aa13.19□□□□□ -0.3
SS18-217ENST00000580958 PRIM1P49642 420 aaKnown RBP13.19□□□□□ -0.3
SS18-217ENST00000580958 BEND3Q5T5X7 828 aa13.19□□□□□ -0.3
SS18-217ENST00000580958 CEP85Q6P2H3 762 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 92 ms