RNA–Protein interactions for RNA: ENST00000580315.1

CDC42EP4-205, Transcript of CDC42 effector protein 4, human

TSL 2

Gene CDC42EP4, Length 1,022 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDC42EP4-205	ENST00000580315	PNN	Q9H307	717 aa	Known RBP	33	■■■□□ 2.87
CDC42EP4-205	ENST00000580315	ADAMTS7	Q9UKP4	1686 aa		33	■■■□□ 2.87
CDC42EP4-205	ENST00000580315	TJP1	Q07157	1748 aa		32.99	■■■□□ 2.87
CDC42EP4-205	ENST00000580315	DDR1	Q08345	913 aa		32.99	■■■□□ 2.87
CDC42EP4-205	ENST00000580315	IL17RE	Q8NFR9	667 aa		32.99	■■■□□ 2.87
CDC42EP4-205	ENST00000580315	ZNF316	A6NFI3	1004 aa	Predicted RBP	32.98	■■■□□ 2.87
CDC42EP4-205	ENST00000580315	DNAJC10	Q8IXB1	793 aa		32.97	■■■□□ 2.87
CDC42EP4-205	ENST00000580315	RTF1	Q92541	710 aa	Known RBP	32.97	■■■□□ 2.87
CDC42EP4-205	ENST00000580315	PIM2	Q9P1W9	311 aa		32.97	■■■□□ 2.87
CDC42EP4-205	ENST00000580315	BRCA1	P38398	1863 aa	Known RBP	32.95	■■■□□ 2.87
CDC42EP4-205	ENST00000580315	SLC39A6	Q13433	755 aa		32.95	■■■□□ 2.87
CDC42EP4-205	ENST00000580315	PRKRIP1	Q9H875	184 aa	Predicted RBP	32.95	■■■□□ 2.87
CDC42EP4-205	ENST00000580315	TTC5	Q8N0Z6	440 aa		32.94	■■■□□ 2.86
CDC42EP4-205	ENST00000580315	TM4SF1	P30408	202 aa		32.93	■■■□□ 2.86
CDC42EP4-205	ENST00000580315	POLRMT	O00411	1230 aa	Known RBP	32.92	■■■□□ 2.86
CDC42EP4-205	ENST00000580315	HTATSF1	O43719	755 aa	Known RBP	32.92	■■■□□ 2.86
CDC42EP4-205	ENST00000580315	DALRD3	Q5D0E6	543 aa	Known RBP	32.92	■■■□□ 2.86
CDC42EP4-205	ENST00000580315	IFFO2	Q5TF58	517 aa		32.92	■■■□□ 2.86
CDC42EP4-205	ENST00000580315	CEMIP	Q8WUJ3	1361 aa		32.92	■■■□□ 2.86
CDC42EP4-205	ENST00000580315	ZPR1	O75312	459 aa		32.91	■■■□□ 2.86
CDC42EP4-205	ENST00000580315	TOMM70	O94826	608 aa		32.91	■■■□□ 2.86
CDC42EP4-205	ENST00000580315	CYP19A1	P11511	503 aa	Predicted RBP	32.91	■■■□□ 2.86
CDC42EP4-205	ENST00000580315	C9orf131	Q5VYM1	1079 aa		32.91	■■■□□ 2.86
CDC42EP4-205	ENST00000580315	USPL1	Q5W0Q7	1092 aa		32.91	■■■□□ 2.86
CDC42EP4-205	ENST00000580315	SOS1	Q07889	1333 aa	Predicted RBP	32.91	■■■□□ 2.86
CDC42EP4-205	ENST00000580315	MAPK8IP3	Q9UPT6	1336 aa		32.91	■■■□□ 2.86
CDC42EP4-205	ENST00000580315	CHRNA5	P30532	468 aa		32.9	■■■□□ 2.86
CDC42EP4-205	ENST00000580315	NMRK2	Q9NPI5	230 aa		32.9	■■■□□ 2.86
CDC42EP4-205	ENST00000580315	PLEKHF1	Q96S99	279 aa		32.89	■■■□□ 2.86
CDC42EP4-205	ENST00000580315	ARFGEF1	Q9Y6D6	1849 aa		32.87	■■■□□ 2.85
CDC42EP4-205	ENST00000580315	VSIG10	Q8N0Z9	540 aa		32.87	■■■□□ 2.85
CDC42EP4-205	ENST00000580315	ZNF790	Q6PG37	636 aa		32.86	■■■□□ 2.85
CDC42EP4-205	ENST00000580315	MCM10	Q7L590	875 aa		32.86	■■■□□ 2.85
CDC42EP4-205	ENST00000580315	VIRMA	Q69YN4	1812 aa	Known RBP	32.86	■■■□□ 2.85
CDC42EP4-205	ENST00000580315	APLP1	P51693	650 aa		32.85	■■■□□ 2.85
CDC42EP4-205	ENST00000580315	NARF	Q9UHQ1	456 aa		32.85	■■■□□ 2.85
CDC42EP4-205	ENST00000580315	KCP	Q6ZWJ8	1503 aa		32.85	■■■□□ 2.85
CDC42EP4-205	ENST00000580315	BTBD11	A6QL63	1104 aa		32.84	■■■□□ 2.85
CDC42EP4-205	ENST00000580315	WDR43	Q15061	677 aa	Known RBP eCLIP	32.84	■■■□□ 2.85
CDC42EP4-205	ENST00000580315	NFE2L2	Q16236	605 aa		32.84	■■■□□ 2.85
CDC42EP4-205	ENST00000580315	ZBTB1	Q9Y2K1	713 aa		32.84	■■■□□ 2.85
CDC42EP4-205	ENST00000580315	NFIX	Q14938	502 aa		32.83	■■■□□ 2.85
CDC42EP4-205	ENST00000580315	COL15A1	P39059	1388 aa		32.83	■■■□□ 2.85
CDC42EP4-205	ENST00000580315	DCTN1	Q14203	1278 aa		32.81	■■■□□ 2.84
CDC42EP4-205	ENST00000580315	RNF181	Q9P0P0	153 aa		32.81	■■■□□ 2.84
CDC42EP4-205	ENST00000580315	BCL2L12	Q9HB09	334 aa		32.8	■■■□□ 2.84
CDC42EP4-205	ENST00000580315	ZNF496	Q96IT1	587 aa	Predicted RBP	32.79	■■■□□ 2.84
CDC42EP4-205	ENST00000580315	FMNL2	Q96PY5	1086 aa		32.79	■■■□□ 2.84
CDC42EP4-205	ENST00000580315	TEX13A	Q9BXU3	409 aa	Predicted RBP	32.78	■■■□□ 2.84
CDC42EP4-205	ENST00000580315	STARD3NL	O95772	234 aa		32.77	■■■□□ 2.84
CDC42EP4-205	ENST00000580315	RBM46	Q8TBY0	533 aa	Known RBP	32.77	■■■□□ 2.84
CDC42EP4-205	ENST00000580315	HEG1	Q9ULI3	1381 aa		32.77	■■■□□ 2.84
CDC42EP4-205	ENST00000580315	SIPA1L3	O60292	1781 aa	Predicted RBP	32.77	■■■□□ 2.84
CDC42EP4-205	ENST00000580315	DNAJC5G	Q8N7S2	189 aa		32.76	■■■□□ 2.83
CDC42EP4-205	ENST00000580315	KDM2B	Q8NHM5	1336 aa		32.76	■■■□□ 2.83
CDC42EP4-205	ENST00000580315	UBR2	Q8IWV8	1755 aa		32.75	■■■□□ 2.83
CDC42EP4-205	ENST00000580315	SERPINB2	P05120	415 aa		32.75	■■■□□ 2.83
CDC42EP4-205	ENST00000580315	CANX	P27824	592 aa	Known RBP	32.75	■■■□□ 2.83
CDC42EP4-205	ENST00000580315	TAF7	Q15545	349 aa	Predicted RBP	32.75	■■■□□ 2.83
CDC42EP4-205	ENST00000580315	C16orf71	Q8IYS4	520 aa	Predicted RBP	32.75	■■■□□ 2.83
CDC42EP4-205	ENST00000580315	NRXN2	Q9P2S2	1712 aa		32.71	■■■□□ 2.83
CDC42EP4-205	ENST00000580315	KCNQ3	O43525	872 aa		32.71	■■■□□ 2.83
CDC42EP4-205	ENST00000580315	EIF5	P55010	431 aa	Known RBP	32.71	■■■□□ 2.83
CDC42EP4-205	ENST00000580315	RIPK4	P57078	832 aa		32.71	■■■□□ 2.83
CDC42EP4-205	ENST00000580315	PNISR	Q8TF01	805 aa	Known RBP	32.71	■■■□□ 2.83
CDC42EP4-205	ENST00000580315	RUNDC1	Q96C34	613 aa		32.71	■■■□□ 2.83
CDC42EP4-205	ENST00000580315	AFDN	P55196	1824 aa	Known RBP	32.71	■■■□□ 2.83
CDC42EP4-205	ENST00000580315	RRAGC	Q9HB90	399 aa		32.7	■■■□□ 2.83
CDC42EP4-205	ENST00000580315	ADAMTS8	Q9UP79	889 aa		32.7	■■■□□ 2.83
CDC42EP4-205	ENST00000580315	RASSF7	Q02833	373 aa		32.69	■■■□□ 2.82
CDC42EP4-205	ENST00000580315	LMOD3	Q0VAK6	560 aa		32.69	■■■□□ 2.82
CDC42EP4-205	ENST00000580315	CCDC146	Q8IYE0	955 aa		32.69	■■■□□ 2.82
CDC42EP4-205	ENST00000580315	ANP32C	O43423	234 aa		32.68	■■■□□ 2.82
CDC42EP4-205	ENST00000580315	TMPO	P42166	694 aa	Known RBP	32.68	■■■□□ 2.82
CDC42EP4-205	ENST00000580315	FSTL1	Q12841	308 aa		32.68	■■■□□ 2.82
CDC42EP4-205	ENST00000580315	TTLL6	Q8N841	843 aa		32.68	■■■□□ 2.82
CDC42EP4-205	ENST00000580315	SBF1	O95248	1867 aa		32.67	■■■□□ 2.82
CDC42EP4-205	ENST00000580315		A0A087WZG4	1122 aa		32.67	■■■□□ 2.82
CDC42EP4-205	ENST00000580315	BICDL1	Q6ZP65	573 aa		32.67	■■■□□ 2.82
CDC42EP4-205	ENST00000580315	C2CD5	Q86YS7	1000 aa		32.67	■■■□□ 2.82
CDC42EP4-205	ENST00000580315	CARMIL3	Q8ND23	1372 aa		32.66	■■■□□ 2.82
CDC42EP4-205	ENST00000580315	SNRPA1	P09661	255 aa	Known RBP	32.65	■■■□□ 2.82
CDC42EP4-205	ENST00000580315	THUMPD2	Q9BTF0	503 aa	Known RBP	32.65	■■■□□ 2.82
CDC42EP4-205	ENST00000580315	ZC3H4	Q9UPT8	1303 aa	Known RBP	32.65	■■■□□ 2.82
CDC42EP4-205	ENST00000580315		H0YIN7	160 aa		32.64	■■■□□ 2.82
CDC42EP4-205	ENST00000580315	LMNB1	P20700	586 aa		32.64	■■■□□ 2.82
CDC42EP4-205	ENST00000580315	PRELP	P51888	382 aa		32.64	■■■□□ 2.82
CDC42EP4-205	ENST00000580315	MIS18A	Q9NYP9	233 aa		32.64	■■■□□ 2.82
CDC42EP4-205	ENST00000580315	TBC1D9B	Q66K14	1250 aa		32.63	■■■□□ 2.81
CDC42EP4-205	ENST00000580315	DLG5	Q8TDM6	1919 aa		32.63	■■■□□ 2.81
CDC42EP4-205	ENST00000580315	RRP7A	Q9Y3A4	280 aa	Known RBP	32.62	■■■□□ 2.81
CDC42EP4-205	ENST00000580315	DLEC1	Q9Y238	1755 aa		32.61	■■■□□ 2.81
CDC42EP4-205	ENST00000580315	HTRA3	P83110	453 aa		32.61	■■■□□ 2.81
CDC42EP4-205	ENST00000580315	NEUROD2	Q15784	382 aa		32.61	■■■□□ 2.81
CDC42EP4-205	ENST00000580315	NPM2	Q86SE8	214 aa	Known RBP	32.61	■■■□□ 2.81
CDC42EP4-205	ENST00000580315	TBC1D2B	Q9UPU7	963 aa		32.6	■■■□□ 2.81
CDC42EP4-205	ENST00000580315	ZNF330	Q9Y3S2	320 aa	Predicted RBP	32.6	■■■□□ 2.81
CDC42EP4-205	ENST00000580315	TNRC6C	Q9HCJ0	1690 aa	Known RBP	32.59	■■■□□ 2.81
CDC42EP4-205	ENST00000580315	IL6ST	P40189	918 aa	Predicted RBP	32.59	■■■□□ 2.81
CDC42EP4-205	ENST00000580315	WDR90	Q96KV7	1748 aa		32.59	■■■□□ 2.81

Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms