RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 STK31Q9BXU1 1019 aa32.11■■■□□ 2.73
SHMT1-207ENST00000580002 KIF16BQ96L93 1317 aa32.1■■■□□ 2.73
SHMT1-207ENST00000580002 PDIA6Q15084 440 aa32.09■■■□□ 2.73
SHMT1-207ENST00000580002 COG6Q9Y2V7 657 aa32.08■■■□□ 2.73
SHMT1-207ENST00000580002 EP400Q96L91 3159 aa32.08■■■□□ 2.73
SHMT1-207ENST00000580002 DNAJC10Q8IXB1 793 aa32.07■■■□□ 2.72
SHMT1-207ENST00000580002 RGS12O14924 1447 aa32.06■■■□□ 2.72
SHMT1-207ENST00000580002 IPO8O15397 1037 aaKnown RBP32.05■■■□□ 2.72
SHMT1-207ENST00000580002 PDE3AQ14432 1141 aa32.05■■■□□ 2.72
SHMT1-207ENST00000580002 DZIP1LQ8IYY4 767 aaKnown RBP32.05■■■□□ 2.72
SHMT1-207ENST00000580002 A1BGP04217 495 aa32.04■■■□□ 2.72
SHMT1-207ENST00000580002 MYL6BP14649 208 aa32.04■■■□□ 2.72
SHMT1-207ENST00000580002 FLIIQ13045 1269 aa32.04■■■□□ 2.72
SHMT1-207ENST00000580002 ARHGAP45Q92619 1136 aa32.03■■■□□ 2.72
SHMT1-207ENST00000580002 DBF4Q9UBU7 674 aaPredicted RBP32.03■■■□□ 2.72
SHMT1-207ENST00000580002 F6X3S4 739 aa32.02■■■□□ 2.72
SHMT1-207ENST00000580002 KCNQ4P56696 695 aa32.02■■■□□ 2.72
SHMT1-207ENST00000580002 PALLDQ8WX93 1383 aa32.02■■■□□ 2.72
SHMT1-207ENST00000580002 NBPF26B4DH59 902 aa32.02■■■□□ 2.72
SHMT1-207ENST00000580002 NBPF14Q5TI25 921 aa32.02■■■□□ 2.72
SHMT1-207ENST00000580002 NBPF10Q6P3W6 841 aaKnown RBP32.02■■■□□ 2.72
SHMT1-207ENST00000580002 TMEM57Q8N5G2 664 aa32.02■■■□□ 2.72
SHMT1-207ENST00000580002 NBPF15Q8N660 670 aa32.02■■■□□ 2.72
SHMT1-207ENST00000580002 DDX21Q9NR30 783 aaKnown RBP eCLIP32.01■■■□□ 2.71
SHMT1-207ENST00000580002 FTSJ3Q8IY81 847 aaKnown RBP32■■■□□ 2.71
SHMT1-207ENST00000580002 FAM196AQ6ZSG2 479 aa31.99■■■□□ 2.71
SHMT1-207ENST00000580002 LRP10Q7Z4F1 713 aa31.99■■■□□ 2.71
SHMT1-207ENST00000580002 VSIG10Q8N0Z9 540 aa31.99■■■□□ 2.71
SHMT1-207ENST00000580002 SBF2Q86WG5 1849 aa31.99■■■□□ 2.71
SHMT1-207ENST00000580002 LOC102724428A0A0B4J2F2 783 aa31.99■■■□□ 2.71
SHMT1-207ENST00000580002 SIK1P57059 783 aa31.99■■■□□ 2.71
SHMT1-207ENST00000580002 NHSQ6T4R5 1651 aa31.98■■■□□ 2.71
SHMT1-207ENST00000580002 TRIM37O94972 964 aa31.98■■■□□ 2.71
SHMT1-207ENST00000580002 FKBP5Q13451 457 aaPredicted RBP31.98■■■□□ 2.71
SHMT1-207ENST00000580002 AIMP1Q12904 312 aaKnown RBP31.97■■■□□ 2.71
SHMT1-207ENST00000580002 ITPK1Q13572 414 aa31.97■■■□□ 2.71
SHMT1-207ENST00000580002 API5Q9BZZ5 524 aaKnown RBP31.97■■■□□ 2.71
SHMT1-207ENST00000580002 PTPRCP08575 1304 aa31.97■■■□□ 2.71
SHMT1-207ENST00000580002 ATP6V1AP38606 617 aa31.96■■■□□ 2.71
SHMT1-207ENST00000580002 BTAF1O14981 1849 aa31.96■■■□□ 2.71
SHMT1-207ENST00000580002 ABCC4O15439 1325 aa31.95■■■□□ 2.71
SHMT1-207ENST00000580002 CYP19A1P11511 503 aaPredicted RBP31.95■■■□□ 2.71
SHMT1-207ENST00000580002 SMARCC1Q92922 1105 aaPredicted RBP31.95■■■□□ 2.71
SHMT1-207ENST00000580002 BCL11BQ9C0K0 894 aaPredicted RBP31.95■■■□□ 2.71
SHMT1-207ENST00000580002 MVPQ14764 893 aaKnown RBP31.94■■■□□ 2.7
SHMT1-207ENST00000580002 ITPRIPQ8IWB1 547 aa31.94■■■□□ 2.7
SHMT1-207ENST00000580002 CHMP4AQ9BY43 222 aa31.94■■■□□ 2.7
SHMT1-207ENST00000580002 HYPKQ9NX55 129 aa31.94■■■□□ 2.7
SHMT1-207ENST00000580002 LAMB4A4D0S4 1761 aa31.93■■■□□ 2.7
SHMT1-207ENST00000580002 XAGE3Q8WTP9 111 aa31.93■■■□□ 2.7
SHMT1-207ENST00000580002 COPS6Q7L5N1 327 aa31.92■■■□□ 2.7
SHMT1-207ENST00000580002 SLC4A10Q6U841 1118 aa31.91■■■□□ 2.7
SHMT1-207ENST00000580002 TEX13AQ9BXU3 409 aaPredicted RBP31.91■■■□□ 2.7
SHMT1-207ENST00000580002 TJP1Q07157 1748 aa31.91■■■□□ 2.7
SHMT1-207ENST00000580002 PI4KAP2A4QPH2 592 aa31.9■■■□□ 2.7
SHMT1-207ENST00000580002 MS4A1P11836 297 aa31.9■■■□□ 2.7
SHMT1-207ENST00000580002 PI4KAP1Q8N8J0 262 aa31.9■■■□□ 2.7
SHMT1-207ENST00000580002 CACNA1FO60840 1977 aa31.89■■■□□ 2.7
SHMT1-207ENST00000580002 STARD3NLO95772 234 aa31.89■■■□□ 2.7
SHMT1-207ENST00000580002 ADCY9O60503 1353 aa31.89■■■□□ 2.7
SHMT1-207ENST00000580002 ERICH6BQ5W0A0 696 aa31.88■■■□□ 2.69
SHMT1-207ENST00000580002 ZBTB1Q9Y2K1 713 aa31.88■■■□□ 2.69
SHMT1-207ENST00000580002 TTLL7Q6ZT98 887 aa31.87■■■□□ 2.69
SHMT1-207ENST00000580002 B4GALNT3Q6L9W6 998 aa31.86■■■□□ 2.69
SHMT1-207ENST00000580002 LINC00116Q8NCU8 138 aa31.86■■■□□ 2.69
SHMT1-207ENST00000580002 ZNF330Q9Y3S2 320 aaPredicted RBP31.86■■■□□ 2.69
SHMT1-207ENST00000580002 INTS3Q68E01 1043 aaKnown RBP31.86■■■□□ 2.69
SHMT1-207ENST00000580002 INTS5Q6P9B9 1019 aaKnown RBP31.86■■■□□ 2.69
SHMT1-207ENST00000580002 ERBB4Q15303 1308 aa31.85■■■□□ 2.69
SHMT1-207ENST00000580002 PPP4R2Q9NY27 417 aa31.85■■■□□ 2.69
SHMT1-207ENST00000580002 MAP3K2Q9Y2U5 619 aa31.85■■■□□ 2.69
SHMT1-207ENST00000580002 CRKLP46109 303 aaKnown RBP31.84■■■□□ 2.69
SHMT1-207ENST00000580002 KSR2Q6VAB6 950 aa31.83■■■□□ 2.69
SHMT1-207ENST00000580002 DNAAF4Q8WXU2 420 aa31.83■■■□□ 2.69
SHMT1-207ENST00000580002 ZBTB7BO15156 539 aaPredicted RBP31.82■■■□□ 2.68
SHMT1-207ENST00000580002 CCNL1Q9UK58 526 aaPredicted RBP31.82■■■□□ 2.68
SHMT1-207ENST00000580002 SMIM5Q71RC9 77 aa31.81■■■□□ 2.68
SHMT1-207ENST00000580002 LRRC4BQ9NT99 713 aa31.81■■■□□ 2.68
SHMT1-207ENST00000580002 DDX19BQ9UMR2 479 aa31.81■■■□□ 2.68
SHMT1-207ENST00000580002 ANKRD13DQ6ZTN6 518 aa31.79■■■□□ 2.68
SHMT1-207ENST00000580002 RIC3Q7Z5B4 369 aa31.79■■■□□ 2.68
SHMT1-207ENST00000580002 CCDC87Q9NVE4 849 aa31.79■■■□□ 2.68
SHMT1-207ENST00000580002 BEND3Q5T5X7 828 aa31.79■■■□□ 2.68
SHMT1-207ENST00000580002 MYH14Q7Z406 1995 aaKnown RBP31.78■■■□□ 2.68
SHMT1-207ENST00000580002 ZBTB40Q9NUA8 1239 aa31.77■■■□□ 2.68
SHMT1-207ENST00000580002 PROM2Q8N271 834 aa31.76■■■□□ 2.68
SHMT1-207ENST00000580002 ZBTB3Q9H5J0 574 aa31.76■■■□□ 2.68
SHMT1-207ENST00000580002 C1orf115Q9H7X2 142 aa31.76■■■□□ 2.68
SHMT1-207ENST00000580002 PCDHB15Q9Y5E8 787 aa31.76■■■□□ 2.68
SHMT1-207ENST00000580002 DDX58O95786 925 aaKnown RBP31.76■■■□□ 2.67
SHMT1-207ENST00000580002 CCT4P50991 539 aaKnown RBP31.76■■■□□ 2.67
SHMT1-207ENST00000580002 ARXQ96QS3 562 aa31.76■■■□□ 2.67
SHMT1-207ENST00000580002 MEIS3Q99687 375 aa31.76■■■□□ 2.67
SHMT1-207ENST00000580002 LY75O60449 1722 aa31.75■■■□□ 2.67
SHMT1-207ENST00000580002 APBA3O96018 575 aa31.75■■■□□ 2.67
SHMT1-207ENST00000580002 CWF19L2Q2TBE0 894 aaKnown RBP31.74■■■□□ 2.67
SHMT1-207ENST00000580002 PLBD2Q8NHP8 589 aa31.73■■■□□ 2.67
SHMT1-207ENST00000580002 EIF5P55010 431 aaKnown RBP31.73■■■□□ 2.67
SHMT1-207ENST00000580002 AMIGO3Q86WK7 504 aa31.73■■■□□ 2.67
SHMT1-207ENST00000580002 MYD88Q99836 296 aa31.73■■■□□ 2.67
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms