RNA–Protein interactions for RNA: ENST00000578896.1

GGA3-207, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 5

Gene GGA3, Length 439 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-207ENST00000578896 PHACTR3Q96KR7 559 aa12.04□□□□□ -0.48
GGA3-207ENST00000578896 BCL2L12Q9HB09 334 aa12.04□□□□□ -0.48
GGA3-207ENST00000578896 AFDNP55196 1824 aaKnown RBP12.03□□□□□ -0.48
GGA3-207ENST00000578896 KCNQ3O43525 872 aa12.03□□□□□ -0.48
GGA3-207ENST00000578896 NFIXQ14938 502 aa12.03□□□□□ -0.48
GGA3-207ENST00000578896 BICDL1Q6ZP65 573 aa12.03□□□□□ -0.48
GGA3-207ENST00000578896 PIM2Q9P1W9 311 aa12.03□□□□□ -0.48
GGA3-207ENST00000578896 NARFQ9UHQ1 456 aa12.03□□□□□ -0.48
GGA3-207ENST00000578896 GNAT3A8MTJ3 354 aa12.02□□□□□ -0.49
GGA3-207ENST00000578896 PRKAR2BP31323 418 aa12.02□□□□□ -0.49
GGA3-207ENST00000578896 TEFQ10587 303 aa12.02□□□□□ -0.49
GGA3-207ENST00000578896 DALRD3Q5D0E6 543 aaKnown RBP12.02□□□□□ -0.49
GGA3-207ENST00000578896 C9orf131Q5VYM1 1079 aa12.02□□□□□ -0.49
GGA3-207ENST00000578896 TTC5Q8N0Z6 440 aa12.02□□□□□ -0.49
GGA3-207ENST00000578896 ZNF496Q96IT1 587 aaPredicted RBP12.02□□□□□ -0.49
GGA3-207ENST00000578896 ZNF330Q9Y3S2 320 aaPredicted RBP12.02□□□□□ -0.49
GGA3-207ENST00000578896 COL15A1P39059 1388 aa12.02□□□□□ -0.49
GGA3-207ENST00000578896 NPC1L1Q9UHC9 1359 aa12.02□□□□□ -0.49
GGA3-207ENST00000578896 SERPINB2P05120 415 aa12.01□□□□□ -0.49
GGA3-207ENST00000578896 CCDC24Q8N4L8 307 aa12.01□□□□□ -0.49
GGA3-207ENST00000578896 GAS2L2Q8NHY3 880 aa12.01□□□□□ -0.49
GGA3-207ENST00000578896 NMRK2Q9NPI5 230 aa12.01□□□□□ -0.49
GGA3-207ENST00000578896 ARFGEF1Q9Y6D6 1849 aa12.01□□□□□ -0.49
GGA3-207ENST00000578896 UBR2Q8IWV8 1755 aa12□□□□□ -0.49
GGA3-207ENST00000578896 A1BGP04217 495 aa12□□□□□ -0.49
GGA3-207ENST00000578896 PIP4K2AP48426 406 aaPredicted RBP12□□□□□ -0.49
GGA3-207ENST00000578896 ZNF790Q6PG37 636 aa12□□□□□ -0.49
GGA3-207ENST00000578896 VSIG10Q8N0Z9 540 aa12□□□□□ -0.49
GGA3-207ENST00000578896 RSPH6AQ9H0K4 717 aa12□□□□□ -0.49
GGA3-207ENST00000578896 TBC1D2BQ9UPU7 963 aa12□□□□□ -0.49
GGA3-207ENST00000578896 STARD3NLO95772 234 aa11.99□□□□□ -0.49
GGA3-207ENST00000578896 U2AF1L5P0DN76 240 aaPredicted RBP11.99□□□□□ -0.49
GGA3-207ENST00000578896 HSPA6P17066 643 aa11.99□□□□□ -0.49
GGA3-207ENST00000578896 PPP2R1AP30153 589 aa11.99□□□□□ -0.49
GGA3-207ENST00000578896 EIF5P55010 431 aaKnown RBP11.99□□□□□ -0.49
GGA3-207ENST00000578896 U2AF1Q01081 240 aaKnown RBP eCLIP11.99□□□□□ -0.49
GGA3-207ENST00000578896 RASSF7Q02833 373 aa11.99□□□□□ -0.49
GGA3-207ENST00000578896 CARMIL3Q8ND23 1372 aa11.99□□□□□ -0.49
GGA3-207ENST00000578896 SBF1O95248 1867 aa11.99□□□□□ -0.49
GGA3-207ENST00000578896 SIPA1L3O60292 1781 aaPredicted RBP11.98□□□□□ -0.49
GGA3-207ENST00000578896 HEG1Q9ULI3 1381 aa11.98□□□□□ -0.49
GGA3-207ENST00000578896 PRAMEF22A3QJZ6 481 aa11.98□□□□□ -0.49
GGA3-207ENST00000578896 DCTN1Q14203 1278 aa11.98□□□□□ -0.49
GGA3-207ENST00000578896 TBC1D9BQ66K14 1250 aa11.98□□□□□ -0.49
GGA3-207ENST00000578896 MCM10Q7L590 875 aa11.98□□□□□ -0.49
GGA3-207ENST00000578896 CFAP53Q96M91 514 aa11.98□□□□□ -0.49
GGA3-207ENST00000578896 RNF181Q9P0P0 153 aa11.98□□□□□ -0.49
GGA3-207ENST00000578896 BTBD11A6QL63 1104 aa11.97□□□□□ -0.49
GGA3-207ENST00000578896 C2CD5Q86YS7 1000 aa11.97□□□□□ -0.49
GGA3-207ENST00000578896 ZNF219Q9P2Y4 722 aaPredicted RBP11.97□□□□□ -0.49
GGA3-207ENST00000578896 USP16Q9Y5T5 823 aa11.97□□□□□ -0.49
GGA3-207ENST00000578896 CCDC88AQ3V6T2 1871 aa11.96□□□□□ -0.49
GGA3-207ENST00000578896 PRELPP51888 382 aa11.96□□□□□ -0.49
GGA3-207ENST00000578896 FMNL2Q96PY5 1086 aa11.96□□□□□ -0.49
GGA3-207ENST00000578896 NUDCQ9Y266 331 aa11.96□□□□□ -0.49
GGA3-207ENST00000578896 CEMIPQ8WUJ3 1361 aa11.95□□□□□ -0.5
GGA3-207ENST00000578896 NRXN2Q9P2S2 1712 aa11.95□□□□□ -0.5
GGA3-207ENST00000578896 A0A087WZG4 1122 aa11.95□□□□□ -0.5
GGA3-207ENST00000578896 RRAGCQ9HB90 399 aa11.95□□□□□ -0.5
GGA3-207ENST00000578896 MIS18AQ9NYP9 233 aa11.95□□□□□ -0.5
GGA3-207ENST00000578896 ANKRD31Q8N7Z5 1873 aa11.94□□□□□ -0.5
GGA3-207ENST00000578896 TOMM70O94826 608 aa11.94□□□□□ -0.5
GGA3-207ENST00000578896 IL6STP40189 918 aaPredicted RBP11.94□□□□□ -0.5
GGA3-207ENST00000578896 HTRA3P83110 453 aa11.94□□□□□ -0.5
GGA3-207ENST00000578896 PRR5LQ6MZQ0 368 aa11.94□□□□□ -0.5
GGA3-207ENST00000578896 TTLL6Q8N841 843 aa11.94□□□□□ -0.5
GGA3-207ENST00000578896 ZNF622Q969S3 477 aaKnown RBP eCLIP11.94□□□□□ -0.53e-8■■□□□ 11.7
GGA3-207ENST00000578896 TEX13AQ9BXU3 409 aaPredicted RBP11.94□□□□□ -0.5
GGA3-207ENST00000578896 H0YIN7 160 aa11.93□□□□□ -0.5
GGA3-207ENST00000578896 CAMTA2O94983 1202 aa11.93□□□□□ -0.5
GGA3-207ENST00000578896 RTF1Q92541 710 aaKnown RBP11.93□□□□□ -0.5
GGA3-207ENST00000578896 DZIP3Q86Y13 1208 aaKnown RBP11.92□□□□□ -0.5
GGA3-207ENST00000578896 DLEC1Q9Y238 1755 aa11.92□□□□□ -0.5
GGA3-207ENST00000578896 FAM177BA6PVY3 158 aa11.91□□□□□ -0.5
GGA3-207ENST00000578896 NFKBIEO00221 500 aa11.91□□□□□ -0.5
GGA3-207ENST00000578896 C21orf2O43822 256 aa11.91□□□□□ -0.5
GGA3-207ENST00000578896 NPM2Q86SE8 214 aaKnown RBP11.91□□□□□ -0.5
GGA3-207ENST00000578896 C16orf71Q8IYS4 520 aaPredicted RBP11.91□□□□□ -0.5
GGA3-207ENST00000578896 SETDB2Q96T68 719 aa11.91□□□□□ -0.5
GGA3-207ENST00000578896 CACNA1SQ13698 1873 aa11.91□□□□□ -0.5
GGA3-207ENST00000578896 SCN7AQ01118 1682 aa11.91□□□□□ -0.5
GGA3-207ENST00000578896 NBPF26B4DH59 902 aa11.9□□□□□ -0.5
GGA3-207ENST00000578896 NPHP1O15259 732 aa11.9□□□□□ -0.5
GGA3-207ENST00000578896 SNRPA1P09661 255 aaKnown RBP11.9□□□□□ -0.5
GGA3-207ENST00000578896 COL11A2P13942 1736 aaPredicted RBP11.9□□□□□ -0.5
GGA3-207ENST00000578896 LMNB1P20700 586 aa11.9□□□□□ -0.5
GGA3-207ENST00000578896 NBPF10Q6P3W6 841 aaKnown RBP11.9□□□□□ -0.5
GGA3-207ENST00000578896 NGEFQ8N5V2 710 aa11.9□□□□□ -0.5
GGA3-207ENST00000578896 NBPF15Q8N660 670 aa11.9□□□□□ -0.5
GGA3-207ENST00000578896 THUMPD2Q9BTF0 503 aaKnown RBP11.9□□□□□ -0.5
GGA3-207ENST00000578896 BRIP1Q9BX63 1249 aa11.9□□□□□ -0.5
GGA3-207ENST00000578896 SLX4Q8IY92 1834 aa11.9□□□□□ -0.5
GGA3-207ENST00000578896 DLG5Q8TDM6 1919 aa11.9□□□□□ -0.51
GGA3-207ENST00000578896 KDM2BQ8NHM5 1336 aa11.89□□□□□ -0.51
GGA3-207ENST00000578896 APLP1P51693 650 aa11.89□□□□□ -0.51
GGA3-207ENST00000578896 CNBD1Q8NA66 436 aa11.89□□□□□ -0.51
GGA3-207ENST00000578896 RBM46Q8TBY0 533 aaKnown RBP11.89□□□□□ -0.51
GGA3-207ENST00000578896 PDE6BP35913 854 aa11.88□□□□□ -0.51
GGA3-207ENST00000578896 TAF7Q15545 349 aaPredicted RBP11.88□□□□□ -0.51
GGA3-207ENST00000578896 HLFQ16534 295 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms