RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 C1orf141Q5JVX7 400 aa13.46□□□□□ -0.25
SS18-210ENST00000578700 COL13A1Q5TAT6 717 aaPredicted RBP13.46□□□□□ -0.25
SS18-210ENST00000578700 MORC1Q86VD1 984 aa13.46□□□□□ -0.25
SS18-210ENST00000578700 KLRG1Q96E93 195 aa13.46□□□□□ -0.25
SS18-210ENST00000578700 KDRP35968 1356 aa13.45□□□□□ -0.26
SS18-210ENST00000578700 SBF1O95248 1867 aa13.45□□□□□ -0.26
SS18-210ENST00000578700 NFATC2IPQ8NCF5 419 aa13.45□□□□□ -0.26
SS18-210ENST00000578700 PNISRQ8TF01 805 aaKnown RBP13.45□□□□□ -0.26
SS18-210ENST00000578700 PPP2R1AP30153 589 aa13.44□□□□□ -0.26
SS18-210ENST00000578700 FSTL1Q12841 308 aa13.44□□□□□ -0.26
SS18-210ENST00000578700 KCPQ6ZWJ8 1503 aa13.44□□□□□ -0.26
SS18-210ENST00000578700 DDR1Q08345 913 aa13.43□□□□□ -0.26
SS18-210ENST00000578700 WDR43Q15061 677 aaKnown RBP eCLIP13.43□□□□□ -0.26
SS18-210ENST00000578700 AMOTQ4VCS5 1084 aa13.43□□□□□ -0.26
SS18-210ENST00000578700 ZPR1O75312 459 aa13.42□□□□□ -0.26
SS18-210ENST00000578700 RASSF7Q02833 373 aa13.42□□□□□ -0.26
SS18-210ENST00000578700 USPL1Q5W0Q7 1092 aa13.42□□□□□ -0.26
SS18-210ENST00000578700 AEBP1Q8IUX7 1158 aa13.42□□□□□ -0.26
SS18-210ENST00000578700 USP42Q9H9J4 1324 aaKnown RBP13.41□□□□□ -0.26
SS18-210ENST00000578700 TNRC6CQ9HCJ0 1690 aaKnown RBP13.41□□□□□ -0.26
SS18-210ENST00000578700 SULT6B1Q6IMI4 303 aa13.41□□□□□ -0.26
SS18-210ENST00000578700 ZBED9Q6R2W3 1325 aa13.4□□□□□ -0.26
SS18-210ENST00000578700 KDM6AO15550 1401 aaPredicted RBP13.4□□□□□ -0.26
SS18-210ENST00000578700 POLRMTO00411 1230 aaKnown RBP13.4□□□□□ -0.26
SS18-210ENST00000578700 INTS5Q6P9B9 1019 aaKnown RBP13.4□□□□□ -0.26
SS18-210ENST00000578700 DNAJC10Q8IXB1 793 aa13.4□□□□□ -0.26
SS18-210ENST00000578700 TNS4Q8IZW8 715 aa13.4□□□□□ -0.26
SS18-210ENST00000578700 JMYQ8N9B5 988 aa13.4□□□□□ -0.26
SS18-210ENST00000578700 SMC1BQ8NDV3 1235 aa13.4□□□□□ -0.26
SS18-210ENST00000578700 CFAP53Q96M91 514 aa13.4□□□□□ -0.26
SS18-210ENST00000578700 TM4SF1P30408 202 aa13.39□□□□□ -0.27
SS18-210ENST00000578700 SLC39A6Q13433 755 aa13.38□□□□□ -0.27
SS18-210ENST00000578700 CCDC88AQ3V6T2 1871 aa13.38□□□□□ -0.27
SS18-210ENST00000578700 VIRMAQ69YN4 1812 aaKnown RBP13.37□□□□□ -0.27
SS18-210ENST00000578700 TJP1Q07157 1748 aa13.37□□□□□ -0.27
SS18-210ENST00000578700 NFIXQ14938 502 aa13.37□□□□□ -0.27
SS18-210ENST00000578700 LGR6Q9HBX8 967 aa13.37□□□□□ -0.27
SS18-210ENST00000578700 ZNF219Q9P2Y4 722 aaPredicted RBP13.37□□□□□ -0.27
SS18-210ENST00000578700 SCN11AQ9UI33 1791 aa13.37□□□□□ -0.27
SS18-210ENST00000578700 AFDNP55196 1824 aaKnown RBP13.36□□□□□ -0.27
SS18-210ENST00000578700 SERPINB2P05120 415 aa13.36□□□□□ -0.27
SS18-210ENST00000578700 VEGFAP15692 232 aaPredicted RBP13.36□□□□□ -0.27
SS18-210ENST00000578700 BICDL1Q6ZP65 573 aa13.36□□□□□ -0.27
SS18-210ENST00000578700 C2CD5Q86YS7 1000 aa13.36□□□□□ -0.27
SS18-210ENST00000578700 GTF3C3Q9Y5Q9 886 aa13.36□□□□□ -0.27
SS18-210ENST00000578700 ADAMTS7Q9UKP4 1686 aa13.36□□□□□ -0.27
SS18-210ENST00000578700 GLTPD2A6NH11 291 aa13.35□□□□□ -0.27
SS18-210ENST00000578700 HSPA1AP0DMV8 641 aaKnown RBP13.35□□□□□ -0.27
SS18-210ENST00000578700 HSPA1BP0DMV9 641 aaKnown RBP13.35□□□□□ -0.27
SS18-210ENST00000578700 LMNB1P20700 586 aa13.35□□□□□ -0.27
SS18-210ENST00000578700 CANXP27824 592 aaKnown RBP13.35□□□□□ -0.27
SS18-210ENST00000578700 TTLL6Q8N841 843 aa13.35□□□□□ -0.27
SS18-210ENST00000578700 H0YIN7 160 aa13.34□□□□□ -0.27
SS18-210ENST00000578700 CYP19A1P11511 503 aaPredicted RBP13.34□□□□□ -0.27
SS18-210ENST00000578700 PRELPP51888 382 aa13.34□□□□□ -0.27
SS18-210ENST00000578700 AKAP4Q5JQC9 854 aa13.34□□□□□ -0.27
SS18-210ENST00000578700 ZNF622Q969S3 477 aaKnown RBP eCLIP13.34□□□□□ -0.27
SS18-210ENST00000578700 SLC52A2Q9HAB3 445 aa13.34□□□□□ -0.27
SS18-210ENST00000578700 NARFQ9UHQ1 456 aa13.34□□□□□ -0.27
SS18-210ENST00000578700 ZBTB1Q9Y2K1 713 aa13.34□□□□□ -0.27
SS18-210ENST00000578700 DLEC1Q9Y238 1755 aa13.34□□□□□ -0.27
SS18-210ENST00000578700 SOS1Q07889 1333 aaPredicted RBP13.34□□□□□ -0.27
SS18-210ENST00000578700 NEFLP07196 543 aa13.33□□□□□ -0.28
SS18-210ENST00000578700 RNMTO43148 476 aaKnown RBP13.32□□□□□ -0.28
SS18-210ENST00000578700 HMOX1P09601 288 aa13.32□□□□□ -0.28
SS18-210ENST00000578700 IL13P35225 146 aa13.32□□□□□ -0.28
SS18-210ENST00000578700 DPY19L2Q6NUT2 758 aa13.32□□□□□ -0.28
SS18-210ENST00000578700 CCDC24Q8N4L8 307 aa13.32□□□□□ -0.28
SS18-210ENST00000578700 BCL2L12Q9HB09 334 aa13.32□□□□□ -0.28
SS18-210ENST00000578700 ZNF330Q9Y3S2 320 aaPredicted RBP13.32□□□□□ -0.28
SS18-210ENST00000578700 NRXN2Q9P2S2 1712 aa13.32□□□□□ -0.28
SS18-210ENST00000578700 ZC3H4Q9UPT8 1303 aaKnown RBP13.32□□□□□ -0.28
SS18-210ENST00000578700 MAPK8IP2Q13387 824 aaPredicted RBP13.31□□□□□ -0.28
SS18-210ENST00000578700 NUDCQ9Y266 331 aa13.31□□□□□ -0.28
SS18-210ENST00000578700 COL15A1P39059 1388 aa13.31□□□□□ -0.28
SS18-210ENST00000578700 TIAM2Q8IVF5 1701 aa13.3□□□□□ -0.28
SS18-210ENST00000578700 NFKBIEO00221 500 aa13.3□□□□□ -0.28
SS18-210ENST00000578700 C21orf2O43822 256 aa13.3□□□□□ -0.28
SS18-210ENST00000578700 ADAMTS8Q9UP79 889 aa13.3□□□□□ -0.28
SS18-210ENST00000578700 DICER1Q9UPY3 1922 aaKnown RBP13.3□□□□□ -0.28
SS18-210ENST00000578700 POTECB2RU33 542 aa13.29□□□□□ -0.28
SS18-210ENST00000578700 NPHP1O15259 732 aa13.29□□□□□ -0.28
SS18-210ENST00000578700 ERFEQ4G0M1 354 aa13.29□□□□□ -0.28
SS18-210ENST00000578700 MKRN1Q9UHC7 482 aaKnown RBP13.29□□□□□ -0.28
SS18-210ENST00000578700 MTHFSDQ2M296 383 aaKnown RBP13.28□□□□□ -0.28
SS18-210ENST00000578700 TBC1D9BQ66K14 1250 aa13.28□□□□□ -0.28
SS18-210ENST00000578700 TTC5Q8N0Z6 440 aa13.28□□□□□ -0.28
SS18-210ENST00000578700 NGEFQ8N5V2 710 aa13.28□□□□□ -0.28
SS18-210ENST00000578700 STARD3NLO95772 234 aa13.27□□□□□ -0.29
SS18-210ENST00000578700 TBC1D2BQ9UPU7 963 aa13.27□□□□□ -0.29
SS18-210ENST00000578700 CARMIL3Q8ND23 1372 aa13.27□□□□□ -0.29
SS18-210ENST00000578700 A0A087WZG4 1122 aa13.26□□□□□ -0.29
SS18-210ENST00000578700 DDNO94850 711 aaPredicted RBP13.26□□□□□ -0.29
SS18-210ENST00000578700 PDE6BP35913 854 aa13.26□□□□□ -0.29
SS18-210ENST00000578700 NPM2Q86SE8 214 aaKnown RBP13.26□□□□□ -0.29
SS18-210ENST00000578700 VSIG10Q8N0Z9 540 aa13.26□□□□□ -0.29
SS18-210ENST00000578700 PNNQ9H307 717 aaKnown RBP13.26□□□□□ -0.29
SS18-210ENST00000578700 FER1L6Q2WGJ9 1857 aa13.25□□□□□ -0.29
SS18-210ENST00000578700 MRC1P22897 1456 aa13.25□□□□□ -0.29
SS18-210ENST00000578700 POTEIP0CG38 1075 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms