RNA–Protein interactions for RNA: ENST00000577539.1

VAPA-203, Transcript of VAMP associated protein A, humanhuman

Gene VAPA, Length 3,760 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPA-203ENST00000577539 CDK19Q9BWU1 502 aa6.77□□□□□ -1.33
VAPA-203ENST00000577539 G3V3G9 751 aa6.77□□□□□ -1.33
VAPA-203ENST00000577539 ELOAQ14241 798 aaKnown RBP6.77□□□□□ -1.33
VAPA-203ENST00000577539 ESF1Q9H501 851 aaKnown RBP6.77□□□□□ -1.33
VAPA-203ENST00000577539 ZBTB3Q9H5J0 574 aa6.77□□□□□ -1.33
VAPA-203ENST00000577539 MYOM1P52179 1685 aa6.77□□□□□ -1.33
VAPA-203ENST00000577539 FYB1O15117 783 aa6.77□□□□□ -1.33
VAPA-203ENST00000577539 BECN1Q14457 450 aa6.77□□□□□ -1.33
VAPA-203ENST00000577539 WAPLQ7Z5K2 1190 aa6.77□□□□□ -1.33
VAPA-203ENST00000577539 A0A1W2PP64 1363 aa6.76□□□□□ -1.33
VAPA-203ENST00000577539 ELL2O00472 640 aaPredicted RBP6.76□□□□□ -1.33
VAPA-203ENST00000577539 HMOX1P09601 288 aa6.76□□□□□ -1.33
VAPA-203ENST00000577539 SND1Q7KZF4 910 aaKnown RBP eCLIP6.76□□□□□ -1.33
VAPA-203ENST00000577539 MLH3Q9UHC1 1453 aa6.76□□□□□ -1.33
VAPA-203ENST00000577539 ADGRB3O60242 1522 aa6.76□□□□□ -1.33
VAPA-203ENST00000577539 MROH2AA6NES4 1674 aa6.76□□□□□ -1.33
VAPA-203ENST00000577539 SSH1Q8WYL5 1049 aa6.76□□□□□ -1.33
VAPA-203ENST00000577539 NINLQ9Y2I6 1382 aa6.76□□□□□ -1.33
VAPA-203ENST00000577539 FRAT2O75474 233 aaPredicted RBP6.75□□□□□ -1.33
VAPA-203ENST00000577539 MVPQ14764 893 aaKnown RBP6.75□□□□□ -1.33
VAPA-203ENST00000577539 ECM1Q16610 540 aa6.75□□□□□ -1.33
VAPA-203ENST00000577539 SULF1Q8IWU6 871 aa6.75□□□□□ -1.33
VAPA-203ENST00000577539 STK32AQ8WU08 396 aa6.75□□□□□ -1.33
VAPA-203ENST00000577539 YEATS2Q9ULM3 1422 aa6.75□□□□□ -1.33
VAPA-203ENST00000577539 KIAA1210Q9ULL0 1709 aa6.75□□□□□ -1.33
VAPA-203ENST00000577539 NRXN1Q9ULB1 1477 aa6.75□□□□□ -1.33
VAPA-203ENST00000577539 ABCC3O15438 1527 aa6.75□□□□□ -1.33
VAPA-203ENST00000577539 PRKAR2BP31323 418 aa6.75□□□□□ -1.33
VAPA-203ENST00000577539 NR6A1Q15406 480 aa6.75□□□□□ -1.33
VAPA-203ENST00000577539 CCDC27Q2M243 656 aa6.75□□□□□ -1.33
VAPA-203ENST00000577539 KIAA1522Q9P206 1035 aaPredicted RBP6.75□□□□□ -1.33
VAPA-203ENST00000577539 NOB1Q9ULX3 412 aaKnown RBP6.75□□□□□ -1.33
VAPA-203ENST00000577539 AMOTL2Q9Y2J4 779 aa6.75□□□□□ -1.33
VAPA-203ENST00000577539 LMTK2Q8IWU2 1503 aa6.75□□□□□ -1.33
VAPA-203ENST00000577539 BHMG1C9JSJ3 638 aaPredicted RBP6.74□□□□□ -1.33
VAPA-203ENST00000577539 FAM177A1Q8N128 213 aaPredicted RBP6.74□□□□□ -1.33
VAPA-203ENST00000577539 SP7Q8TDD2 431 aaPredicted RBP6.74□□□□□ -1.33
VAPA-203ENST00000577539 THUMPD2Q9BTF0 503 aaKnown RBP6.74□□□□□ -1.33
VAPA-203ENST00000577539 PNMA3Q9UL41 463 aa6.74□□□□□ -1.33
VAPA-203ENST00000577539 ATAD2Q6PL18 1390 aa6.74□□□□□ -1.33
VAPA-203ENST00000577539 PNNQ9H307 717 aaKnown RBP6.74□□□□□ -1.33
VAPA-203ENST00000577539 IVNS1ABPQ9Y6Y0 642 aa6.74□□□□□ -1.33
VAPA-203ENST00000577539 NSD2O96028 1365 aa6.74□□□□□ -1.33
VAPA-203ENST00000577539 F12P00748 615 aaPredicted RBP6.74□□□□□ -1.33
VAPA-203ENST00000577539 TRIM27P14373 513 aa6.74□□□□□ -1.33
VAPA-203ENST00000577539 MTMR2Q13614 643 aa6.74□□□□□ -1.33
VAPA-203ENST00000577539 IPO8O15397 1037 aaKnown RBP6.73□□□□□ -1.33
VAPA-203ENST00000577539 EIF2AK3Q9NZJ5 1116 aaKnown RBP6.73□□□□□ -1.33
VAPA-203ENST00000577539 ADGRB1O14514 1584 aa6.73□□□□□ -1.33
VAPA-203ENST00000577539 HECW2Q9P2P5 1572 aa6.73□□□□□ -1.33
VAPA-203ENST00000577539 FUT2Q10981 343 aa6.73□□□□□ -1.33
VAPA-203ENST00000577539 ATF7IPQ6VMQ6 1270 aa6.73□□□□□ -1.33
VAPA-203ENST00000577539 FAM174AQ8TBP5 190 aa6.73□□□□□ -1.33
VAPA-203ENST00000577539 DDX19BQ9UMR2 479 aa6.73□□□□□ -1.33
VAPA-203ENST00000577539 FDX1P10109 184 aa6.73□□□□□ -1.33
VAPA-203ENST00000577539 RFX1P22670 979 aa6.73□□□□□ -1.33
VAPA-203ENST00000577539 AAMPQ13685 434 aa6.73□□□□□ -1.33
VAPA-203ENST00000577539 TMEM164Q5U3C3 297 aa6.73□□□□□ -1.33
VAPA-203ENST00000577539 TMEM57Q8N5G2 664 aa6.73□□□□□ -1.33
VAPA-203ENST00000577539 FRMPD1Q5SYB0 1578 aa6.73□□□□□ -1.33
VAPA-203ENST00000577539 SETBP1Q9Y6X0 1596 aa6.72□□□□□ -1.33
VAPA-203ENST00000577539 QRICH2Q9H0J4 1663 aa6.72□□□□□ -1.33
VAPA-203ENST00000577539 WASHC4Q2M389 1173 aa6.72□□□□□ -1.33
VAPA-203ENST00000577539 PHTF2Q8N3S3 785 aa6.72□□□□□ -1.33
VAPA-203ENST00000577539 EMILIN1Q9Y6C2 1016 aa6.72□□□□□ -1.33
VAPA-203ENST00000577539 ABCC11Q96J66 1382 aa6.72□□□□□ -1.33
VAPA-203ENST00000577539 NEURL4Q96JN8 1562 aa6.72□□□□□ -1.33
VAPA-203ENST00000577539 UBE2Q2Q8WVN8 375 aa6.72□□□□□ -1.33
VAPA-203ENST00000577539 LNPKQ9C0E8 428 aa6.72□□□□□ -1.33
VAPA-203ENST00000577539 YTHDC2Q9H6S0 1430 aaKnown RBP6.72□□□□□ -1.33
VAPA-203ENST00000577539 TULP4Q9NRJ4 1543 aa6.72□□□□□ -1.33
VAPA-203ENST00000577539 GLI2P10070 1586 aa6.72□□□□□ -1.33
VAPA-203ENST00000577539 NME9Q86XW9 330 aa6.71□□□□□ -1.33
VAPA-203ENST00000577539 PLEKHF1Q96S99 279 aa6.71□□□□□ -1.33
VAPA-203ENST00000577539 NEO1Q92859 1461 aa6.71□□□□□ -1.34
VAPA-203ENST00000577539 CT47B1P0C2W7 299 aaPredicted RBP6.71□□□□□ -1.34
VAPA-203ENST00000577539 USP46P62068 366 aa6.71□□□□□ -1.34
VAPA-203ENST00000577539 RRS1Q15050 365 aaKnown RBP6.71□□□□□ -1.34
VAPA-203ENST00000577539 SWT1Q5T5J6 900 aaKnown RBP6.71□□□□□ -1.34
VAPA-203ENST00000577539 KIAA1468Q9P260 1216 aa6.71□□□□□ -1.34
VAPA-203ENST00000577539 USP19O94966 1318 aa6.7□□□□□ -1.34
VAPA-203ENST00000577539 KIF16BQ96L93 1317 aa6.7□□□□□ -1.34
VAPA-203ENST00000577539 BRD2P25440 801 aaKnown RBP6.7□□□□□ -1.34
VAPA-203ENST00000577539 SCNN1AP37088 669 aa6.7□□□□□ -1.34
VAPA-203ENST00000577539 NUTM1Q86Y26 1132 aa6.7□□□□□ -1.34
VAPA-203ENST00000577539 PHACTR3Q96KR7 559 aa6.7□□□□□ -1.34
VAPA-203ENST00000577539 POLKQ9UBT6 870 aa6.7□□□□□ -1.34
VAPA-203ENST00000577539 ATP9BO43861 1147 aa6.7□□□□□ -1.34
VAPA-203ENST00000577539 LMOD1P29536 600 aaPredicted RBP6.7□□□□□ -1.34
VAPA-203ENST00000577539 BRPF3Q9ULD4 1205 aa6.7□□□□□ -1.34
VAPA-203ENST00000577539 RBM47A0AV96 593 aaKnown RBP6.7□□□□□ -1.34
VAPA-203ENST00000577539 NBPF26B4DH59 902 aa6.7□□□□□ -1.34
VAPA-203ENST00000577539 FBXO45P0C2W1 286 aa6.7□□□□□ -1.34
VAPA-203ENST00000577539 CRTC2Q53ET0 693 aaPredicted RBP6.7□□□□□ -1.34
VAPA-203ENST00000577539 DMRTA1Q5VZB9 504 aa6.7□□□□□ -1.34
VAPA-203ENST00000577539 COG3Q96JB2 828 aa6.7□□□□□ -1.34
VAPA-203ENST00000577539 DCBLD2Q96PD2 775 aa6.7□□□□□ -1.34
VAPA-203ENST00000577539 HOXB1P14653 301 aaPredicted RBP6.69□□□□□ -1.34
VAPA-203ENST00000577539 ANKRD45Q5TZF3 282 aa6.69□□□□□ -1.34
VAPA-203ENST00000577539 THAP11Q96EK4 314 aa6.69□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms