RNA–Protein interactions for RNA: ENST00000577300.1

SMCHD1-202, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 506 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-202ENST00000577300 SERBP1Q8NC51 408 aaKnown RBP eCLIP10.66□□□□□ -0.7
SMCHD1-202ENST00000577300 NEDD1Q8NHV4 660 aa10.66□□□□□ -0.7
SMCHD1-202ENST00000577300 CABP1Q9NZU7 370 aa10.66□□□□□ -0.7
SMCHD1-202ENST00000577300 SCHIP1Q9P0W5 487 aaPredicted RBP10.66□□□□□ -0.7
SMCHD1-202ENST00000577300 PCDHGC4Q9Y5F7 938 aa10.66□□□□□ -0.7
SMCHD1-202ENST00000577300 ATP9BO43861 1147 aa10.65□□□□□ -0.7
SMCHD1-202ENST00000577300 FNBP4Q8N3X1 1017 aaPredicted RBP10.65□□□□□ -0.7
SMCHD1-202ENST00000577300 ZCCHC2Q9C0B9 1178 aaKnown RBP10.65□□□□□ -0.7
SMCHD1-202ENST00000577300 GDF2Q9UK05 429 aaPredicted RBP10.65□□□□□ -0.7
SMCHD1-202ENST00000577300 USP17L3A6NCW0 530 aa10.64□□□□□ -0.71
SMCHD1-202ENST00000577300 USP17L4A6NCW7 530 aa10.64□□□□□ -0.71
SMCHD1-202ENST00000577300 TATP17735 454 aaPredicted RBP10.64□□□□□ -0.71
SMCHD1-202ENST00000577300 ATP1A2P50993 1020 aa10.64□□□□□ -0.71
SMCHD1-202ENST00000577300 EPHA4P54764 986 aa10.64□□□□□ -0.71
SMCHD1-202ENST00000577300 USP17L2Q6R6M4 530 aa10.64□□□□□ -0.71
SMCHD1-202ENST00000577300 USP17L1Q7RTZ2 530 aa10.64□□□□□ -0.71
SMCHD1-202ENST00000577300 A0A1W2PNR3 127 aa10.63□□□□□ -0.71
SMCHD1-202ENST00000577300 PHF20L1A8MW92 1017 aa10.63□□□□□ -0.71
SMCHD1-202ENST00000577300 C2CD2LO14523 706 aa10.63□□□□□ -0.71
SMCHD1-202ENST00000577300 ZBTB7BO15156 539 aaPredicted RBP10.63□□□□□ -0.71
SMCHD1-202ENST00000577300 BMP4P12644 408 aa10.63□□□□□ -0.71
SMCHD1-202ENST00000577300 FOXK2Q01167 660 aa10.63□□□□□ -0.71
SMCHD1-202ENST00000577300 BEND7Q8N7W2 519 aaPredicted RBP10.63□□□□□ -0.71
SMCHD1-202ENST00000577300 GOLGA6L1Q8N7Z2 621 aa10.63□□□□□ -0.71
SMCHD1-202ENST00000577300 CLUAP1Q96AJ1 413 aa10.63□□□□□ -0.71
SMCHD1-202ENST00000577300 DNMT3AQ9Y6K1 912 aaPredicted RBP10.63□□□□□ -0.71
SMCHD1-202ENST00000577300 ATXN7O15265 892 aaPredicted RBP10.62□□□□□ -0.71
SMCHD1-202ENST00000577300 CTBSQ01459 385 aa10.62□□□□□ -0.71
SMCHD1-202ENST00000577300 ARSJQ5FYB0 599 aaPredicted RBP10.62□□□□□ -0.71
SMCHD1-202ENST00000577300 PROSER2Q86WR7 435 aaPredicted RBP10.62□□□□□ -0.71
SMCHD1-202ENST00000577300 ZIC5Q96T25 663 aa10.62□□□□□ -0.71
SMCHD1-202ENST00000577300 CNTNAP5Q8WYK1 1306 aa10.61□□□□□ -0.71
SMCHD1-202ENST00000577300 TEAD4Q15561 434 aa10.61□□□□□ -0.71
SMCHD1-202ENST00000577300 PODNQ7Z5L7 613 aa10.61□□□□□ -0.71
SMCHD1-202ENST00000577300 ZDHHC1Q8WTX9 485 aa10.61□□□□□ -0.71
SMCHD1-202ENST00000577300 CLDN10P78369 228 aa10.6□□□□□ -0.71
SMCHD1-202ENST00000577300 CCDC102BQ68D86 513 aa10.6□□□□□ -0.71
SMCHD1-202ENST00000577300 C1orf229Q6ZS94 237 aaPredicted RBP10.6□□□□□ -0.71
SMCHD1-202ENST00000577300 GALNT6Q8NCL4 622 aa10.6□□□□□ -0.71
SMCHD1-202ENST00000577300 TPCN2Q8NHX9 752 aa10.6□□□□□ -0.71
SMCHD1-202ENST00000577300 KIAA1024Q9UPX6 916 aa10.6□□□□□ -0.71
SMCHD1-202ENST00000577300 SHISA8B8ZZ34 492 aa10.59□□□□□ -0.71
SMCHD1-202ENST00000577300 TNP2Q05952 138 aa10.59□□□□□ -0.71
SMCHD1-202ENST00000577300 FAM182BQ5T319 152 aa10.59□□□□□ -0.71
SMCHD1-202ENST00000577300 SAMD5Q5TGI4 173 aa10.59□□□□□ -0.71
SMCHD1-202ENST00000577300 SLCO4C1Q6ZQN7 724 aa10.59□□□□□ -0.71
SMCHD1-202ENST00000577300 SLC9A9Q8IVB4 645 aa10.59□□□□□ -0.71
SMCHD1-202ENST00000577300 TNS4Q8IZW8 715 aa10.59□□□□□ -0.71
SMCHD1-202ENST00000577300 LARGE2Q8N3Y3 721 aa10.59□□□□□ -0.71
SMCHD1-202ENST00000577300 L3MBTL2Q969R5 705 aa10.59□□□□□ -0.71
SMCHD1-202ENST00000577300 MKRN1Q9UHC7 482 aaKnown RBP10.59□□□□□ -0.71
SMCHD1-202ENST00000577300 PARP3Q9Y6F1 533 aa10.59□□□□□ -0.71
SMCHD1-202ENST00000577300 M0R2N6 131 aa10.58□□□□□ -0.72
SMCHD1-202ENST00000577300 MAPTP10636 758 aaKnown RBP10.58□□□□□ -0.72
SMCHD1-202ENST00000577300 NOS2P35228 1153 aa10.58□□□□□ -0.72
SMCHD1-202ENST00000577300 OGFOD1Q8N543 542 aa10.58□□□□□ -0.72
SMCHD1-202ENST00000577300 EDARADDQ8WWZ3 215 aa10.58□□□□□ -0.72
SMCHD1-202ENST00000577300 GLMNQ92990 594 aa10.58□□□□□ -0.72
SMCHD1-202ENST00000577300 PALM3A6NDB9 673 aaPredicted RBP10.57□□□□□ -0.72
SMCHD1-202ENST00000577300 FAM157BP0CG42 384 aa10.57□□□□□ -0.72
SMCHD1-202ENST00000577300 ARAFP10398 606 aa10.57□□□□□ -0.72
SMCHD1-202ENST00000577300 TXLNAP40222 546 aa10.57□□□□□ -0.72
SMCHD1-202ENST00000577300 BICDL1Q6ZP65 573 aa10.57□□□□□ -0.72
SMCHD1-202ENST00000577300 SIX5Q8N196 739 aa10.57□□□□□ -0.72
SMCHD1-202ENST00000577300 GGA1Q9UJY5 639 aa10.57□□□□□ -0.72
SMCHD1-202ENST00000577300 A6NJR5 290 aa10.56□□□□□ -0.72
SMCHD1-202ENST00000577300 EML1O00423 815 aa10.56□□□□□ -0.72
SMCHD1-202ENST00000577300 HCN2Q9UL51 889 aa10.56□□□□□ -0.72
SMCHD1-202ENST00000577300 GPC6Q9Y625 555 aaPredicted RBP10.56□□□□□ -0.72
SMCHD1-202ENST00000577300 GJA3Q9Y6H8 435 aa10.56□□□□□ -0.72
SMCHD1-202ENST00000577300 DCDC2BA2VCK2 349 aa10.55□□□□□ -0.72
SMCHD1-202ENST00000577300 KHNYNO15037 678 aaKnown RBP10.55□□□□□ -0.72
SMCHD1-202ENST00000577300 AVENQ9NQS1 362 aaPredicted RBP10.55□□□□□ -0.72
SMCHD1-202ENST00000577300 SERTM1A2A2V5 107 aa10.54□□□□□ -0.72
SMCHD1-202ENST00000577300 SNRPNP63162 240 aaKnown RBP10.54□□□□□ -0.72
SMCHD1-202ENST00000577300 LAMC2Q13753 1193 aa10.54□□□□□ -0.72
SMCHD1-202ENST00000577300 TBCELQ5QJ74 424 aa10.54□□□□□ -0.72
SMCHD1-202ENST00000577300 TFIP11Q9UBB9 837 aaKnown RBP10.54□□□□□ -0.72
SMCHD1-202ENST00000577300 EFSO43281 561 aa10.53□□□□□ -0.72
SMCHD1-202ENST00000577300 DKK1O94907 266 aa10.53□□□□□ -0.72
SMCHD1-202ENST00000577300 IGHA1P01876 353 aa10.53□□□□□ -0.72
SMCHD1-202ENST00000577300 EPXP11678 715 aa10.53□□□□□ -0.72
SMCHD1-202ENST00000577300 CD33P20138 364 aa10.53□□□□□ -0.72
SMCHD1-202ENST00000577300 PSMA6P60900 246 aaKnown RBP10.53□□□□□ -0.72
SMCHD1-202ENST00000577300 POTEAQ6S8J7 498 aa10.53□□□□□ -0.72
SMCHD1-202ENST00000577300 C7orf43Q8WVR3 580 aa10.53□□□□□ -0.72
SMCHD1-202ENST00000577300 DCAF5Q96JK2 942 aa10.53□□□□□ -0.72
SMCHD1-202ENST00000577300 MKL2Q9ULH7 1088 aa10.53□□□□□ -0.72
SMCHD1-202ENST00000577300 ZNF232Q9UNY5 417 aa10.53□□□□□ -0.72
SMCHD1-202ENST00000577300 MAFBQ9Y5Q3 323 aaPredicted RBP10.53□□□□□ -0.72
SMCHD1-202ENST00000577300 HIRAP54198 1017 aaPredicted RBP10.52□□□□□ -0.73
SMCHD1-202ENST00000577300 TSPAN10Q9H1Z9 355 aaPredicted RBP10.52□□□□□ -0.73
SMCHD1-202ENST00000577300 NEURL1BA8MQ27 555 aa10.51□□□□□ -0.73
SMCHD1-202ENST00000577300 C1orf53Q5VUE5 145 aa10.51□□□□□ -0.73
SMCHD1-202ENST00000577300 ZNF594Q96JF6 807 aaPredicted RBP10.51□□□□□ -0.73
SMCHD1-202ENST00000577300 MARK1Q9P0L2 795 aa10.51□□□□□ -0.73
SMCHD1-202ENST00000577300 RBM19Q9Y4C8 960 aaKnown RBP10.51□□□□□ -0.73
SMCHD1-202ENST00000577300 HOXB4P17483 251 aaPredicted RBP10.5□□□□□ -0.73
SMCHD1-202ENST00000577300 ADH6P28332 368 aa10.5□□□□□ -0.73
SMCHD1-202ENST00000577300 SH3PXD2AQ5TCZ1 1133 aa10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms