RNA–Protein interactions for RNA: ENST00000574755.5

VPS33B-208, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2

Gene VPS33B, Length 2,356 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-208ENST00000574755 SDSP20132 328 aa17.36■□□□□ 0.37
VPS33B-208ENST00000574755 EIF5BO60841 1220 aaKnown RBP17.35■□□□□ 0.37
VPS33B-208ENST00000574755 HYPKQ9NX55 129 aa17.35■□□□□ 0.37
VPS33B-208ENST00000574755 MAP3K2Q9Y2U5 619 aa17.35■□□□□ 0.37
VPS33B-208ENST00000574755 CYP27B1O15528 508 aa17.35■□□□□ 0.37
VPS33B-208ENST00000574755 PDE1AP54750 535 aa17.35■□□□□ 0.37
VPS33B-208ENST00000574755 DCAF5Q96JK2 942 aa17.35■□□□□ 0.37
VPS33B-208ENST00000574755 OSBPL3Q9H4L5 887 aa17.35■□□□□ 0.37
VPS33B-208ENST00000574755 C5P01031 1676 aa17.34■□□□□ 0.37
VPS33B-208ENST00000574755 CASC1Q6TDU7 716 aa17.34■□□□□ 0.37
VPS33B-208ENST00000574755 HSCBQ8IWL3 235 aa17.34■□□□□ 0.37
VPS33B-208ENST00000574755 SSH3Q8TE77 659 aa17.34■□□□□ 0.37
VPS33B-208ENST00000574755 KSR2Q6VAB6 950 aa17.33■□□□□ 0.37
VPS33B-208ENST00000574755 PPP1R42Q7Z4L9 355 aa17.33■□□□□ 0.37
VPS33B-208ENST00000574755 DDX21Q9NR30 783 aaKnown RBP eCLIP17.33■□□□□ 0.36
VPS33B-208ENST00000574755 HSP90AB1P08238 724 aaKnown RBP17.32■□□□□ 0.36
VPS33B-208ENST00000574755 TOM1L2Q6ZVM7 507 aa17.32■□□□□ 0.36
VPS33B-208ENST00000574755 WDR17Q8IZU2 1322 aa17.32■□□□□ 0.36
VPS33B-208ENST00000574755 SRGAP3O43295 1099 aa17.32■□□□□ 0.36
VPS33B-208ENST00000574755 TTC5Q8N0Z6 440 aa17.32■□□□□ 0.36
VPS33B-208ENST00000574755 SPRYD3Q8NCJ5 442 aa17.32■□□□□ 0.36
VPS33B-208ENST00000574755 ANTXR1Q9H6X2 564 aa17.32■□□□□ 0.36
VPS33B-208ENST00000574755 MRC1P22897 1456 aa17.32■□□□□ 0.36
VPS33B-208ENST00000574755 PARP4Q9UKK3 1724 aaKnown RBP17.32■□□□□ 0.36
VPS33B-208ENST00000574755 DDX58O95786 925 aaKnown RBP17.31■□□□□ 0.36
VPS33B-208ENST00000574755 MX1P20591 662 aa17.31■□□□□ 0.36
VPS33B-208ENST00000574755 DEKP35659 375 aaKnown RBP17.31■□□□□ 0.36
VPS33B-208ENST00000574755 AIMP1Q12904 312 aaKnown RBP17.31■□□□□ 0.36
VPS33B-208ENST00000574755 ABCA3Q99758 1704 aa17.31■□□□□ 0.36
VPS33B-208ENST00000574755 POLA2Q14181 598 aa17.31■□□□□ 0.36
VPS33B-208ENST00000574755 C9orf78Q9NZ63 289 aaPredicted RBP17.31■□□□□ 0.36
VPS33B-208ENST00000574755 SALL3Q9BXA9 1300 aa17.31■□□□□ 0.36
VPS33B-208ENST00000574755 SURF6O75683 361 aaKnown RBP17.3■□□□□ 0.36
VPS33B-208ENST00000574755 ALDH1L1O75891 902 aa17.3■□□□□ 0.36
VPS33B-208ENST00000574755 TSHZ3Q63HK5 1081 aa17.3■□□□□ 0.36
VPS33B-208ENST00000574755 ZNF496Q96IT1 587 aaPredicted RBP17.3■□□□□ 0.36
VPS33B-208ENST00000574755 KIF2CQ99661 725 aa17.3■□□□□ 0.36
VPS33B-208ENST00000574755 PDIA6Q15084 440 aa17.3■□□□□ 0.36
VPS33B-208ENST00000574755 COL5A2P05997 1499 aaPredicted RBP17.3■□□□□ 0.36
VPS33B-208ENST00000574755 FRAT2O75474 233 aaPredicted RBP17.29■□□□□ 0.36
VPS33B-208ENST00000574755 CABP4P57796 275 aa17.29■□□□□ 0.36
VPS33B-208ENST00000574755 CWF19L2Q2TBE0 894 aaKnown RBP17.29■□□□□ 0.36
VPS33B-208ENST00000574755 RAB11FIP3O75154 756 aa17.29■□□□□ 0.36
VPS33B-208ENST00000574755 MYL6BP14649 208 aa17.29■□□□□ 0.36
VPS33B-208ENST00000574755 SNX21Q969T3 373 aa17.29■□□□□ 0.36
VPS33B-208ENST00000574755 IL1RAPL2Q9NP60 686 aa17.29■□□□□ 0.36
VPS33B-208ENST00000574755 TUBGCP6Q96RT7 1819 aa17.29■□□□□ 0.36
VPS33B-208ENST00000574755 SNRPA1P09661 255 aaKnown RBP17.28■□□□□ 0.36
VPS33B-208ENST00000574755 LINS1Q8NG48 757 aa17.28■□□□□ 0.36
VPS33B-208ENST00000574755 FMNL2Q96PY5 1086 aa17.28■□□□□ 0.36
VPS33B-208ENST00000574755 PCDH11XQ9BZA7 1347 aa17.27■□□□□ 0.36
VPS33B-208ENST00000574755 PCDH11YQ9BZA8 1340 aa17.27■□□□□ 0.36
VPS33B-208ENST00000574755 RIC3Q7Z5B4 369 aa17.27■□□□□ 0.36
VPS33B-208ENST00000574755 NHSL1Q5SYE7 1610 aa17.27■□□□□ 0.36
VPS33B-208ENST00000574755 ZCRB1Q8TBF4 217 aaKnown RBP17.26■□□□□ 0.35
VPS33B-208ENST00000574755 HDAC5Q9UQL6 1122 aa17.26■□□□□ 0.35
VPS33B-208ENST00000574755 RHPN1Q8TCX5 695 aa17.26■□□□□ 0.35
VPS33B-208ENST00000574755 KIF1BPQ96EK5 621 aa17.26■□□□□ 0.35
VPS33B-208ENST00000574755 USP26Q9BXU7 913 aa17.26■□□□□ 0.35
VPS33B-208ENST00000574755 REC8O95072 547 aa17.25■□□□□ 0.35
VPS33B-208ENST00000574755 STRN4Q9NRL3 753 aa17.25■□□□□ 0.35
VPS33B-208ENST00000574755 STAP2Q9UGK3 403 aa17.25■□□□□ 0.35
VPS33B-208ENST00000574755 USP16Q9Y5T5 823 aa17.25■□□□□ 0.35
VPS33B-208ENST00000574755 TRIM6-TRIM34B2RNG4 842 aa17.25■□□□□ 0.35
VPS33B-208ENST00000574755 MTX1Q13505 466 aa17.25■□□□□ 0.35
VPS33B-208ENST00000574755 HSP90AB4PQ58FF6 505 aa17.25■□□□□ 0.35
VPS33B-208ENST00000574755 RBM42Q9BTD8 480 aaKnown RBP17.25■□□□□ 0.35
VPS33B-208ENST00000574755 GRM8O00222 908 aa17.24■□□□□ 0.35
VPS33B-208ENST00000574755 ERC2O15083 957 aa17.24■□□□□ 0.35
VPS33B-208ENST00000574755 LARP1Q6PKG0 1096 aaKnown RBP17.24■□□□□ 0.35
VPS33B-208ENST00000574755 COPS6Q7L5N1 327 aa17.24■□□□□ 0.35
VPS33B-208ENST00000574755 NUTM1Q86Y26 1132 aa17.24■□□□□ 0.35
VPS33B-208ENST00000574755 XAGE3Q8WTP9 111 aa17.24■□□□□ 0.35
VPS33B-208ENST00000574755 RILPL2Q969X0 211 aa17.24■□□□□ 0.35
VPS33B-208ENST00000574755 IL2RBP14784 551 aa17.24■□□□□ 0.35
VPS33B-208ENST00000574755 EVA1CP58658 441 aa17.24■□□□□ 0.35
VPS33B-208ENST00000574755 NEXNQ0ZGT2 675 aa17.24■□□□□ 0.35
VPS33B-208ENST00000574755 AOX1Q06278 1338 aa17.23■□□□□ 0.35
VPS33B-208ENST00000574755 OS9Q13438 667 aaPredicted RBP17.23■□□□□ 0.35
VPS33B-208ENST00000574755 CARD10Q9BWT7 1032 aa17.23■□□□□ 0.35
VPS33B-208ENST00000574755 CD2BP2O95400 341 aaKnown RBP17.22■□□□□ 0.35
VPS33B-208ENST00000574755 PIP4K2AP48426 406 aaPredicted RBP17.22■□□□□ 0.35
VPS33B-208ENST00000574755 LAMB4A4D0S4 1761 aa17.22■□□□□ 0.35
VPS33B-208ENST00000574755 IGKV5-2P06315 115 aa17.22■□□□□ 0.35
VPS33B-208ENST00000574755 CHMP5Q9NZZ3 219 aa17.22■□□□□ 0.35
VPS33B-208ENST00000574755 UTYO14607 1347 aa17.21■□□□□ 0.35
VPS33B-208ENST00000574755 ANKRD13DQ6ZTN6 518 aa17.21■□□□□ 0.35
VPS33B-208ENST00000574755 AK9Q5TCS8 1911 aa17.21■□□□□ 0.34
VPS33B-208ENST00000574755 K7ELQ4 463 aaPredicted RBP17.21■□□□□ 0.34
VPS33B-208ENST00000574755 RABEP1Q15276 862 aa17.21■□□□□ 0.34
VPS33B-208ENST00000574755 DDX54Q8TDD1 881 aaKnown RBP17.21■□□□□ 0.34
VPS33B-208ENST00000574755 SUCLG2Q96I99 432 aa17.21■□□□□ 0.34
VPS33B-208ENST00000574755 MYD88Q99836 296 aa17.21■□□□□ 0.34
VPS33B-208ENST00000574755 GLI3P10071 1580 aa17.2■□□□□ 0.34
VPS33B-208ENST00000574755 NEURL1BA8MQ27 555 aa17.2■□□□□ 0.34
VPS33B-208ENST00000574755 HSP90AA1P07900 732 aaKnown RBP17.2■□□□□ 0.34
VPS33B-208ENST00000574755 LRP10Q7Z4F1 713 aa17.2■□□□□ 0.34
VPS33B-208ENST00000574755 METTL22Q9BUU2 404 aaPredicted RBP17.2■□□□□ 0.34
VPS33B-208ENST00000574755 SHANK3Q9BYB0 1731 aa17.2■□□□□ 0.34
VPS33B-208ENST00000574755 ERVV-2B6SEH9 535 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms