RNA–Protein interactions for RNA: ENST00000573166.5

SMG6-213, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 1 (best)

Gene SMG6, Length 4,236 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-213ENST00000573166 NBPF5PQ86XG9 351 aaPredicted RBP12.35□□□□□ -0.43
SMG6-213ENST00000573166 DNAJC2Q99543 621 aaKnown RBP12.34□□□□□ -0.43
SMG6-213ENST00000573166 APBA3O96018 575 aa12.34□□□□□ -0.43
SMG6-213ENST00000573166 A1BGP04217 495 aa12.34□□□□□ -0.43
SMG6-213ENST00000573166 WASHC4Q2M389 1173 aa12.34□□□□□ -0.43
SMG6-213ENST00000573166 CCDC158Q5M9N0 1113 aa12.34□□□□□ -0.43
SMG6-213ENST00000573166 PLEKHF1Q96S99 279 aa12.34□□□□□ -0.43
SMG6-213ENST00000573166 SETDB2Q96T68 719 aa12.34□□□□□ -0.43
SMG6-213ENST00000573166 PHAXQ9H814 394 aaKnown RBP12.34□□□□□ -0.43
SMG6-213ENST00000573166 NIP7Q9Y221 180 aaKnown RBP eCLIP12.33□□□□□ -0.44
SMG6-213ENST00000573166 CDK12Q9NYV4 1490 aaPredicted RBP12.33□□□□□ -0.44
SMG6-213ENST00000573166 NEURL4Q96JN8 1562 aa12.33□□□□□ -0.44
SMG6-213ENST00000573166 NCOA3Q9Y6Q9 1424 aa12.33□□□□□ -0.44
SMG6-213ENST00000573166 METTL24Q5JXM2 366 aa12.33□□□□□ -0.44
SMG6-213ENST00000573166 SPRYD3Q8NCJ5 442 aa12.33□□□□□ -0.44
SMG6-213ENST00000573166 KIAA1210Q9ULL0 1709 aa12.33□□□□□ -0.44
SMG6-213ENST00000573166 DCAF8L1A6NGE4 600 aa12.33□□□□□ -0.44
SMG6-213ENST00000573166 KCNQ3O43525 872 aa12.33□□□□□ -0.44
SMG6-213ENST00000573166 AACSQ86V21 672 aa12.33□□□□□ -0.44
SMG6-213ENST00000573166 FSD1Q9BTV5 496 aa12.33□□□□□ -0.44
SMG6-213ENST00000573166 GNL3LQ9NVN8 582 aaKnown RBP12.33□□□□□ -0.44
SMG6-213ENST00000573166 NBPF14Q5TI25 921 aa12.32□□□□□ -0.44
SMG6-213ENST00000573166 SEPT12Q8IYM1 358 aa12.32□□□□□ -0.44
SMG6-213ENST00000573166 ANO2Q9NQ90 1003 aa12.32□□□□□ -0.44
SMG6-213ENST00000573166 PDE4AP27815 886 aa12.32□□□□□ -0.44
SMG6-213ENST00000573166 EIF4A1P60842 406 aaKnown RBP12.32□□□□□ -0.44
SMG6-213ENST00000573166 IPO9Q96P70 1041 aaKnown RBP12.32□□□□□ -0.44
SMG6-213ENST00000573166 BLMP54132 1417 aaPredicted RBP12.32□□□□□ -0.44
SMG6-213ENST00000573166 REC8O95072 547 aa12.32□□□□□ -0.44
SMG6-213ENST00000573166 HOXB7P09629 217 aa12.32□□□□□ -0.44
SMG6-213ENST00000573166 SOS2Q07890 1332 aaPredicted RBP12.32□□□□□ -0.44
SMG6-213ENST00000573166 MYO3AQ8NEV4 1616 aa12.32□□□□□ -0.44
SMG6-213ENST00000573166 TTC39AQ5SRH9 613 aa12.32□□□□□ -0.44
SMG6-213ENST00000573166 LINS1Q8NG48 757 aa12.32□□□□□ -0.44
SMG6-213ENST00000573166 RPGRQ92834 1020 aaKnown RBP12.32□□□□□ -0.44
SMG6-213ENST00000573166 MEIS3Q99687 375 aa12.32□□□□□ -0.44
SMG6-213ENST00000573166 SOS1Q07889 1333 aaPredicted RBP12.32□□□□□ -0.44
SMG6-213ENST00000573166 TPRNQ4KMQ1 711 aa12.31□□□□□ -0.44
SMG6-213ENST00000573166 NOL8Q76FK4 1167 aaKnown RBP12.31□□□□□ -0.44
SMG6-213ENST00000573166 ANKRD18BA2A2Z9 1011 aa12.31□□□□□ -0.44
SMG6-213ENST00000573166 TRAPPC3LQ5T215 181 aa12.31□□□□□ -0.44
SMG6-213ENST00000573166 G2E3Q7L622 706 aa12.31□□□□□ -0.44
SMG6-213ENST00000573166 KRT27Q7Z3Y8 459 aa12.31□□□□□ -0.44
SMG6-213ENST00000573166 CNTROBQ8N137 903 aa12.31□□□□□ -0.44
SMG6-213ENST00000573166 THRAP3Q9Y2W1 955 aaKnown RBP12.31□□□□□ -0.44
SMG6-213ENST00000573166 GOLGA6L22H0YM25 854 aa12.3□□□□□ -0.44
SMG6-213ENST00000573166 ALDH1L1O75891 902 aa12.3□□□□□ -0.44
SMG6-213ENST00000573166 NCLP19338 710 aaKnown RBP12.3□□□□□ -0.44
SMG6-213ENST00000573166 CWF19L2Q2TBE0 894 aaKnown RBP12.3□□□□□ -0.44
SMG6-213ENST00000573166 NCBP3Q53F19 620 aaKnown RBP12.3□□□□□ -0.44
SMG6-213ENST00000573166 AMOTL1Q8IY63 956 aa12.3□□□□□ -0.44
SMG6-213ENST00000573166 ASAP1Q9ULH1 1129 aa12.3□□□□□ -0.44
SMG6-213ENST00000573166 GRM8O00222 908 aa12.3□□□□□ -0.44
SMG6-213ENST00000573166 FAM196AQ6ZSG2 479 aa12.3□□□□□ -0.44
SMG6-213ENST00000573166 CHD1LQ86WJ1 897 aa12.3□□□□□ -0.44
SMG6-213ENST00000573166 KIF1BPQ96EK5 621 aa12.3□□□□□ -0.44
SMG6-213ENST00000573166 USP16Q9Y5T5 823 aa12.3□□□□□ -0.44
SMG6-213ENST00000573166 DCCP43146 1447 aa12.3□□□□□ -0.44
SMG6-213ENST00000573166 BAG6P46379 1132 aa12.29□□□□□ -0.44
SMG6-213ENST00000573166 INTS3Q68E01 1043 aaKnown RBP12.29□□□□□ -0.44
SMG6-213ENST00000573166 LDHAL6AQ6ZMR3 332 aa12.29□□□□□ -0.44
SMG6-213ENST00000573166 ZNF219Q9P2Y4 722 aaPredicted RBP12.29□□□□□ -0.44
SMG6-213ENST00000573166 TRIM37O94972 964 aa12.29□□□□□ -0.44
SMG6-213ENST00000573166 CCDC87Q9NVE4 849 aa12.29□□□□□ -0.44
SMG6-213ENST00000573166 TNNQ9UQP3 1299 aa12.29□□□□□ -0.44
SMG6-213ENST00000573166 SPATA31A6Q5VVP1 1343 aa12.29□□□□□ -0.44
SMG6-213ENST00000573166 GIGYF1O75420 1035 aaPredicted RBP12.29□□□□□ -0.44
SMG6-213ENST00000573166 STK32BQ9NY57 414 aa12.29□□□□□ -0.44
SMG6-213ENST00000573166 ZKSCAN1P17029 563 aaPredicted RBP12.29□□□□□ -0.44
SMG6-213ENST00000573166 FKBP4Q02790 459 aaKnown RBP eCLIP12.29□□□□□ -0.44
SMG6-213ENST00000573166 DDX46Q7L014 1031 aaKnown RBP12.29□□□□□ -0.44
SMG6-213ENST00000573166 ANKIB1Q9P2G1 1089 aa12.29□□□□□ -0.44
SMG6-213ENST00000573166 MST1RQ04912 1400 aa12.28□□□□□ -0.44
SMG6-213ENST00000573166 CYP27B1O15528 508 aa12.28□□□□□ -0.44
SMG6-213ENST00000573166 ANP32BQ92688 251 aaKnown RBP12.28□□□□□ -0.44
SMG6-213ENST00000573166 SIGLEC1Q9BZZ2 1709 aa12.28□□□□□ -0.44
SMG6-213ENST00000573166 TPTE2Q6XPS3 522 aa12.28□□□□□ -0.44
SMG6-213ENST00000573166 NLRP3Q96P20 1036 aa12.28□□□□□ -0.44
SMG6-213ENST00000573166 CDC5LQ99459 802 aaKnown RBP12.28□□□□□ -0.44
SMG6-213ENST00000573166 TRIM34Q9BYJ4 488 aa12.28□□□□□ -0.44
SMG6-213ENST00000573166 ST5P78524 1137 aa12.28□□□□□ -0.44
SMG6-213ENST00000573166 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.28□□□□□ -0.44
SMG6-213ENST00000573166 LMBR1LQ6UX01 489 aa12.27□□□□□ -0.44
SMG6-213ENST00000573166 NUTM1Q86Y26 1132 aa12.27□□□□□ -0.44
SMG6-213ENST00000573166 ZNF622Q969S3 477 aaKnown RBP eCLIP12.27□□□□□ -0.44
SMG6-213ENST00000573166 UBR1Q8IWV7 1749 aa12.27□□□□□ -0.44
SMG6-213ENST00000573166 CPS1P31327 1500 aa12.27□□□□□ -0.44
SMG6-213ENST00000573166 LOC102724428A0A0B4J2F2 783 aa12.27□□□□□ -0.45
SMG6-213ENST00000573166 IFIT1P09914 478 aaKnown RBP12.27□□□□□ -0.45
SMG6-213ENST00000573166 SIK1P57059 783 aa12.27□□□□□ -0.45
SMG6-213ENST00000573166 UTP14AQ9BVJ6 771 aaKnown RBP12.27□□□□□ -0.45
SMG6-213ENST00000573166 AKAP2Q9Y2D5 859 aa12.27□□□□□ -0.45
SMG6-213ENST00000573166 MYO5BQ9ULV0 1848 aa12.27□□□□□ -0.45
SMG6-213ENST00000573166 SMARCA5O60264 1052 aaPredicted RBP12.27□□□□□ -0.45
SMG6-213ENST00000573166 CDC45O75419 566 aa12.27□□□□□ -0.45
SMG6-213ENST00000573166 GJD4Q96KN9 370 aaPredicted RBP12.26□□□□□ -0.45
SMG6-213ENST00000573166 RAB11FIP3O75154 756 aa12.26□□□□□ -0.45
SMG6-213ENST00000573166 RLBP1P12271 317 aa12.26□□□□□ -0.45
SMG6-213ENST00000573166 IQGAP1P46940 1657 aa12.26□□□□□ -0.45
SMG6-213ENST00000573166 ST18O60284 1047 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms