RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 L3MBTL3Q96JM7 780 aaPredicted RBP10.92□□□□□ -0.66
VPS53-214ENST00000572607 DIAPH1O60610 1272 aaKnown RBP10.91□□□□□ -0.66
VPS53-214ENST00000572607 PHKG2P15735 406 aa10.91□□□□□ -0.66
VPS53-214ENST00000572607 IL13P35225 146 aa10.91□□□□□ -0.66
VPS53-214ENST00000572607 PDAP1Q13442 181 aaKnown RBP10.91□□□□□ -0.66
VPS53-214ENST00000572607 NKX1-1Q15270 411 aaPredicted RBP10.91□□□□□ -0.66
VPS53-214ENST00000572607 C1orf141Q5JVX7 400 aa10.91□□□□□ -0.66
VPS53-214ENST00000572607 SMARCC1Q92922 1105 aaPredicted RBP10.91□□□□□ -0.66
VPS53-214ENST00000572607 CFAP53Q96M91 514 aa10.91□□□□□ -0.66
VPS53-214ENST00000572607 TMOD3Q9NYL9 352 aa10.91□□□□□ -0.66
VPS53-214ENST00000572607 CCNL1Q9UK58 526 aaPredicted RBP10.91□□□□□ -0.66
VPS53-214ENST00000572607 CIZ1Q9ULV3 898 aaPredicted RBP10.91□□□□□ -0.66
VPS53-214ENST00000572607 PKD1L3Q7Z443 1732 aa10.9□□□□□ -0.66
VPS53-214ENST00000572607 ZNF530Q6P9A1 599 aaPredicted RBP10.9□□□□□ -0.66
VPS53-214ENST00000572607 PALLDQ8WX93 1383 aa10.9□□□□□ -0.67
VPS53-214ENST00000572607 PNPLA7Q6ZV29 1317 aa10.89□□□□□ -0.67
VPS53-214ENST00000572607 AEBP1Q8IUX7 1158 aa10.89□□□□□ -0.67
VPS53-214ENST00000572607 NLGN2Q8NFZ4 835 aa10.89□□□□□ -0.67
VPS53-214ENST00000572607 KDRP35968 1356 aa10.89□□□□□ -0.67
VPS53-214ENST00000572607 U2SURPO15042 1029 aaKnown RBP10.88□□□□□ -0.67
VPS53-214ENST00000572607 IFFO2Q5TF58 517 aa10.88□□□□□ -0.67
VPS53-214ENST00000572607 DCAF5Q96JK2 942 aa10.88□□□□□ -0.67
VPS53-214ENST00000572607 TAF1LQ8IZX4 1826 aa10.88□□□□□ -0.67
VPS53-214ENST00000572607 TOGARAM1Q9Y4F4 1720 aa10.87□□□□□ -0.67
VPS53-214ENST00000572607 ERVV-2B6SEH9 535 aa10.87□□□□□ -0.67
VPS53-214ENST00000572607 HMOX1P09601 288 aa10.87□□□□□ -0.67
VPS53-214ENST00000572607 ZEB1P37275 1124 aaPredicted RBP10.87□□□□□ -0.67
VPS53-214ENST00000572607 PIGBQ92521 554 aa10.87□□□□□ -0.67
VPS53-214ENST00000572607 TMEM121BQ9BXQ6 578 aaPredicted RBP10.87□□□□□ -0.67
VPS53-214ENST00000572607 TFCP2L1Q9NZI6 479 aa10.87□□□□□ -0.67
VPS53-214ENST00000572607 YBX3P16989 372 aaKnown RBP eCLIP10.86□□□□□ -0.67
VPS53-214ENST00000572607 KCNQ4P56696 695 aa10.86□□□□□ -0.67
VPS53-214ENST00000572607 CABP4P57796 275 aa10.86□□□□□ -0.67
VPS53-214ENST00000572607 NUDCQ9Y266 331 aa10.86□□□□□ -0.67
VPS53-214ENST00000572607 PPP2R1AP30153 589 aa10.85□□□□□ -0.67
VPS53-214ENST00000572607 AKAP4Q5JQC9 854 aa10.85□□□□□ -0.67
VPS53-214ENST00000572607 C3orf67Q6ZVT6 689 aa10.85□□□□□ -0.67
VPS53-214ENST00000572607 SLC16A10Q8TF71 515 aa10.85□□□□□ -0.67
VPS53-214ENST00000572607 C5P01031 1676 aa10.85□□□□□ -0.67
VPS53-214ENST00000572607 GPR162Q16538 588 aa10.84□□□□□ -0.67
VPS53-214ENST00000572607 AK7Q96M32 723 aa10.84□□□□□ -0.67
VPS53-214ENST00000572607 ADCY9O60503 1353 aa10.84□□□□□ -0.67
VPS53-214ENST00000572607 COL3A1P02461 1466 aaPredicted RBP10.83□□□□□ -0.68
VPS53-214ENST00000572607 LOC102724428A0A0B4J2F2 783 aa10.83□□□□□ -0.68
VPS53-214ENST00000572607 GIGYF1O75420 1035 aaPredicted RBP10.83□□□□□ -0.68
VPS53-214ENST00000572607 POLD1P28340 1107 aa10.83□□□□□ -0.68
VPS53-214ENST00000572607 SIK1P57059 783 aa10.83□□□□□ -0.68
VPS53-214ENST00000572607 FLAD1Q8NFF5 587 aa10.83□□□□□ -0.68
VPS53-214ENST00000572607 KDM6AO15550 1401 aaPredicted RBP10.83□□□□□ -0.68
VPS53-214ENST00000572607 ATP6V1AP38606 617 aa10.82□□□□□ -0.68
VPS53-214ENST00000572607 GAS2L2Q8NHY3 880 aa10.82□□□□□ -0.68
VPS53-214ENST00000572607 ATG3Q9NT62 314 aa10.82□□□□□ -0.68
VPS53-214ENST00000572607 ASAP1Q9ULH1 1129 aa10.82□□□□□ -0.68
VPS53-214ENST00000572607 ITGB4P16144 1822 aa10.81□□□□□ -0.68
VPS53-214ENST00000572607 UBR3Q6ZT12 1888 aa10.81□□□□□ -0.68
VPS53-214ENST00000572607 NEFMP07197 916 aa10.81□□□□□ -0.68
VPS53-214ENST00000572607 U2AF1L5P0DN76 240 aaPredicted RBP10.81□□□□□ -0.68
VPS53-214ENST00000572607 U2AF1Q01081 240 aaKnown RBP eCLIP10.81□□□□□ -0.68
VPS53-214ENST00000572607 MTHFSDQ2M296 383 aaKnown RBP10.81□□□□□ -0.68
VPS53-214ENST00000572607 ATP10DQ9P241 1426 aa10.81□□□□□ -0.68
VPS53-214ENST00000572607 KIAA1551Q9HCM1 1747 aa10.81□□□□□ -0.68
VPS53-214ENST00000572607 DDX10Q13206 875 aaKnown RBP10.8□□□□□ -0.68
VPS53-214ENST00000572607 RALBP1Q15311 655 aa10.8□□□□□ -0.68
VPS53-214ENST00000572607 COL23A1Q86Y22 540 aaPredicted RBP10.8□□□□□ -0.68
VPS53-214ENST00000572607 NFATC2IPQ8NCF5 419 aa10.8□□□□□ -0.68
VPS53-214ENST00000572607 RNMTO43148 476 aaKnown RBP10.79□□□□□ -0.68
VPS53-214ENST00000572607 PHF14O94880 888 aa10.79□□□□□ -0.68
VPS53-214ENST00000572607 PRKAR2BP31323 418 aa10.79□□□□□ -0.68
VPS53-214ENST00000572607 DPY19L2Q6NUT2 758 aa10.79□□□□□ -0.68
VPS53-214ENST00000572607 AMIGO3Q86WK7 504 aa10.79□□□□□ -0.68
VPS53-214ENST00000572607 SLC52A2Q9HAB3 445 aa10.79□□□□□ -0.68
VPS53-214ENST00000572607 GNAT3A8MTJ3 354 aa10.78□□□□□ -0.68
VPS53-214ENST00000572607 GNPATO15228 680 aa10.78□□□□□ -0.68
VPS53-214ENST00000572607 TEFQ10587 303 aa10.78□□□□□ -0.68
VPS53-214ENST00000572607 ITPK1Q13572 414 aa10.78□□□□□ -0.68
VPS53-214ENST00000572607 LINC00116Q8NCU8 138 aa10.78□□□□□ -0.68
VPS53-214ENST00000572607 C4BP0C0L5 1744 aa10.78□□□□□ -0.68
VPS53-214ENST00000572607 CICQ96RK0 1608 aaPredicted RBP10.77□□□□□ -0.68
VPS53-214ENST00000572607 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.77□□□□□ -0.69
VPS53-214ENST00000572607 PTCD1O75127 700 aaKnown RBP10.77□□□□□ -0.69
VPS53-214ENST00000572607 FCHSD2O94868 740 aa10.77□□□□□ -0.69
VPS53-214ENST00000572607 SSFA2P28290 1259 aa10.77□□□□□ -0.69
VPS53-214ENST00000572607 TTC5Q8N0Z6 440 aa10.77□□□□□ -0.69
VPS53-214ENST00000572607 RTF1Q92541 710 aaKnown RBP10.77□□□□□ -0.69
VPS53-214ENST00000572607 RSPH6AQ9H0K4 717 aa10.77□□□□□ -0.69
VPS53-214ENST00000572607 PNNQ9H307 717 aaKnown RBP10.77□□□□□ -0.69
VPS53-214ENST00000572607 LGR6Q9HBX8 967 aa10.77□□□□□ -0.69
VPS53-214ENST00000572607 MSL1Q68DK7 614 aa10.76□□□□□ -0.69
VPS53-214ENST00000572607 RTCBQ9Y3I0 505 aaKnown RBP10.76□□□□□ -0.69
VPS53-214ENST00000572607 KIF13BQ9NQT8 1826 aa10.76□□□□□ -0.69
VPS53-214ENST00000572607 MRC1P22897 1456 aa10.75□□□□□ -0.69
VPS53-214ENST00000572607 TRAPPC3LQ5T215 181 aa10.75□□□□□ -0.69
VPS53-214ENST00000572607 CNTNAP4Q9C0A0 1308 aa10.75□□□□□ -0.69
VPS53-214ENST00000572607 GRIN3BO60391 1043 aa10.74□□□□□ -0.69
VPS53-214ENST00000572607 RC3H1Q5TC82 1133 aaKnown RBP10.74□□□□□ -0.69
VPS53-214ENST00000572607 MARVELD3Q96A59 401 aa10.74□□□□□ -0.69
VPS53-214ENST00000572607 PHACTR3Q96KR7 559 aa10.74□□□□□ -0.69
VPS53-214ENST00000572607 SLC4A9Q96Q91 983 aa10.74□□□□□ -0.69
VPS53-214ENST00000572607 BOLA1Q9Y3E2 137 aa10.74□□□□□ -0.69
VPS53-214ENST00000572607 MYBBP1AQ9BQG0 1328 aaKnown RBP10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms