RNA–Protein interactions for RNA: ENST00000572019.1

NUP88-203, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-203ENST00000572019 UBR2Q8IWV8 1755 aa26.21■■□□□ 1.79
NUP88-203ENST00000572019 AKAP4Q5JQC9 854 aa26.21■■□□□ 1.79
NUP88-203ENST00000572019 AMER1Q5JTC6 1135 aaPredicted RBP26.21■■□□□ 1.79
NUP88-203ENST00000572019 HMOX1P09601 288 aa26.2■■□□□ 1.78
NUP88-203ENST00000572019 CYP19A1P11511 503 aaPredicted RBP26.2■■□□□ 1.78
NUP88-203ENST00000572019 PRELPP51888 382 aa26.2■■□□□ 1.78
NUP88-203ENST00000572019 RASSF7Q02833 373 aa26.2■■□□□ 1.78
NUP88-203ENST00000572019 RBM46Q8TBY0 533 aaKnown RBP26.2■■□□□ 1.78
NUP88-203ENST00000572019 BCL2L12Q9HB09 334 aa26.2■■□□□ 1.78
NUP88-203ENST00000572019 RNMTO43148 476 aaKnown RBP26.19■■□□□ 1.78
NUP88-203ENST00000572019 NFIXQ14938 502 aa26.19■■□□□ 1.78
NUP88-203ENST00000572019 ZBTB1Q9Y2K1 713 aa26.19■■□□□ 1.78
NUP88-203ENST00000572019 RRAGCQ9HB90 399 aa26.18■■□□□ 1.78
NUP88-203ENST00000572019 KNSTRNQ9Y448 316 aa26.17■■□□□ 1.78
NUP88-203ENST00000572019 COL15A1P39059 1388 aa26.17■■□□□ 1.78
NUP88-203ENST00000572019 CARMIL3Q8ND23 1372 aa26.17■■□□□ 1.78
NUP88-203ENST00000572019 ZPR1O75312 459 aa26.16■■□□□ 1.78
NUP88-203ENST00000572019 ANKRD31Q8N7Z5 1873 aa26.16■■□□□ 1.78
NUP88-203ENST00000572019 TIAM2Q8IVF5 1701 aa26.15■■□□□ 1.78
NUP88-203ENST00000572019 MTHFSDQ2M296 383 aaKnown RBP26.15■■□□□ 1.78
NUP88-203ENST00000572019 NARFQ9UHQ1 456 aa26.14■■□□□ 1.78
NUP88-203ENST00000572019 C16orf71Q8IYS4 520 aaPredicted RBP26.13■■□□□ 1.77
NUP88-203ENST00000572019 KDM2BQ8NHM5 1336 aa26.13■■□□□ 1.77
NUP88-203ENST00000572019 KLRG1Q96E93 195 aa26.11■■□□□ 1.77
NUP88-203ENST00000572019 COL11A2P13942 1736 aaPredicted RBP26.11■■□□□ 1.77
NUP88-203ENST00000572019 SIPA1L3O60292 1781 aaPredicted RBP26.1■■□□□ 1.77
NUP88-203ENST00000572019 SERPINB2P05120 415 aa26.1■■□□□ 1.77
NUP88-203ENST00000572019 FSTL1Q12841 308 aa26.1■■□□□ 1.77
NUP88-203ENST00000572019 KIF7Q2M1P5 1343 aa26.1■■□□□ 1.77
NUP88-203ENST00000572019 CANXP27824 592 aaKnown RBP26.09■■□□□ 1.77
NUP88-203ENST00000572019 SCN7AQ01118 1682 aa26.08■■□□□ 1.77
NUP88-203ENST00000572019 CACNA1SQ13698 1873 aa26.06■■□□□ 1.76
NUP88-203ENST00000572019 COL3A1P02461 1466 aaPredicted RBP26.06■■□□□ 1.76
NUP88-203ENST00000572019 BICDL1Q6ZP65 573 aa26.06■■□□□ 1.76
NUP88-203ENST00000572019 C2CD5Q86YS7 1000 aa26.06■■□□□ 1.76
NUP88-203ENST00000572019 JMYQ8N9B5 988 aa26.06■■□□□ 1.76
NUP88-203ENST00000572019 PCNTO95613 3336 aa26.06■■□□□ 1.76
NUP88-203ENST00000572019 NFKBIEO00221 500 aa26.05■■□□□ 1.76
NUP88-203ENST00000572019 PER1O15534 1290 aaPredicted RBP26.05■■□□□ 1.76
NUP88-203ENST00000572019 CC2D1BQ5T0F9 858 aaKnown RBP26.05■■□□□ 1.76
NUP88-203ENST00000572019 COL13A1Q5TAT6 717 aaPredicted RBP26.05■■□□□ 1.76
NUP88-203ENST00000572019 CCDC24Q8N4L8 307 aa26.05■■□□□ 1.76
NUP88-203ENST00000572019 FER1L6Q2WGJ9 1857 aa26.04■■□□□ 1.76
NUP88-203ENST00000572019 DICER1Q9UPY3 1922 aaKnown RBP26.04■■□□□ 1.76
NUP88-203ENST00000572019 DIAPH1O60610 1272 aaKnown RBP26.03■■□□□ 1.76
NUP88-203ENST00000572019 LMNB1P20700 586 aa26.03■■□□□ 1.76
NUP88-203ENST00000572019 EIF5P55010 431 aaKnown RBP26.03■■□□□ 1.76
NUP88-203ENST00000572019 TBC1D9BQ66K14 1250 aa26.03■■□□□ 1.76
NUP88-203ENST00000572019 VSIG10Q8N0Z9 540 aa26.03■■□□□ 1.76
NUP88-203ENST00000572019 TTLL6Q8N841 843 aa26.03■■□□□ 1.76
NUP88-203ENST00000572019 ZNF496Q96IT1 587 aaPredicted RBP26.02■■□□□ 1.76
NUP88-203ENST00000572019 GLTPD2A6NH11 291 aa26.01■■□□□ 1.75
NUP88-203ENST00000572019 SMC1BQ8NDV3 1235 aa26.01■■□□□ 1.75
NUP88-203ENST00000572019 IL17REQ8NFR9 667 aa26.01■■□□□ 1.75
NUP88-203ENST00000572019 POTECB2RU33 542 aa26■■□□□ 1.75
NUP88-203ENST00000572019 SLX4Q8IY92 1834 aa26■■□□□ 1.75
NUP88-203ENST00000572019 ZC3H4Q9UPT8 1303 aaKnown RBP25.99■■□□□ 1.75
NUP88-203ENST00000572019 HEG1Q9ULI3 1381 aa25.98■■□□□ 1.75
NUP88-203ENST00000572019 H0YIN7 160 aa25.98■■□□□ 1.75
NUP88-203ENST00000572019 CNGB1Q14028 1251 aaPredicted RBP25.98■■□□□ 1.75
NUP88-203ENST00000572019 ZNF219Q9P2Y4 722 aaPredicted RBP25.98■■□□□ 1.75
NUP88-203ENST00000572019 TBC1D2BQ9UPU7 963 aa25.98■■□□□ 1.75
NUP88-203ENST00000572019 BCORQ6W2J9 1755 aa25.97■■□□□ 1.75
NUP88-203ENST00000572019 KCNQ3O43525 872 aa25.96■■□□□ 1.75
NUP88-203ENST00000572019 VEGFAP15692 232 aaPredicted RBP25.96■■□□□ 1.75
NUP88-203ENST00000572019 PRR5LQ6MZQ0 368 aa25.96■■□□□ 1.75
NUP88-203ENST00000572019 CCER1Q8TC90 406 aaPredicted RBP25.96■■□□□ 1.75
NUP88-203ENST00000572019 ZNF330Q9Y3S2 320 aaPredicted RBP25.96■■□□□ 1.75
NUP88-203ENST00000572019 STARD3NLO95772 234 aa25.95■■□□□ 1.74
NUP88-203ENST00000572019 ZNF790Q6PG37 636 aa25.95■■□□□ 1.74
NUP88-203ENST00000572019 TTC5Q8N0Z6 440 aa25.95■■□□□ 1.74
NUP88-203ENST00000572019 ZNF622Q969S3 477 aaKnown RBP eCLIP25.95■■□□□ 1.74
NUP88-203ENST00000572019 C21orf2O43822 256 aa25.94■■□□□ 1.74
NUP88-203ENST00000572019 A1BGP04217 495 aa25.94■■□□□ 1.74
NUP88-203ENST00000572019 ARFGEF2Q9Y6D5 1785 aa25.93■■□□□ 1.74
NUP88-203ENST00000572019 U2SURPO15042 1029 aaKnown RBP25.93■■□□□ 1.74
NUP88-203ENST00000572019 A0A087WZG4 1122 aa25.91■■□□□ 1.74
NUP88-203ENST00000572019 GNAT3A8MTJ3 354 aa25.91■■□□□ 1.74
NUP88-203ENST00000572019 PIP4K2AP48426 406 aaPredicted RBP25.91■■□□□ 1.74
NUP88-203ENST00000572019 BRIP1Q9BX63 1249 aa25.91■■□□□ 1.74
NUP88-203ENST00000572019 CAMTA2O94983 1202 aa25.9■■□□□ 1.74
NUP88-203ENST00000572019 TEFQ10587 303 aa25.9■■□□□ 1.74
NUP88-203ENST00000572019 PHACTR3Q96KR7 559 aa25.9■■□□□ 1.74
NUP88-203ENST00000572019 CAPN15O75808 1086 aa25.89■■□□□ 1.74
NUP88-203ENST00000572019 CEMIPQ8WUJ3 1361 aa25.89■■□□□ 1.74
NUP88-203ENST00000572019 PRAMEF22A3QJZ6 481 aa25.88■■□□□ 1.73
NUP88-203ENST00000572019 POTEIP0CG38 1075 aa25.88■■□□□ 1.73
NUP88-203ENST00000572019 POTEJP0CG39 1038 aa25.88■■□□□ 1.73
NUP88-203ENST00000572019 IL6STP40189 918 aaPredicted RBP25.88■■□□□ 1.73
NUP88-203ENST00000572019 PDE6BP35913 854 aa25.87■■□□□ 1.73
NUP88-203ENST00000572019 ERFEQ4G0M1 354 aa25.87■■□□□ 1.73
NUP88-203ENST00000572019 GAS2L2Q8NHY3 880 aa25.87■■□□□ 1.73
NUP88-203ENST00000572019 HSPA1AP0DMV8 641 aaKnown RBP25.86■■□□□ 1.73
NUP88-203ENST00000572019 HSPA1BP0DMV9 641 aaKnown RBP25.86■■□□□ 1.73
NUP88-203ENST00000572019 FMNL2Q96PY5 1086 aa25.85■■□□□ 1.73
NUP88-203ENST00000572019 USP16Q9Y5T5 823 aa25.85■■□□□ 1.73
NUP88-203ENST00000572019 CNBD1Q8NA66 436 aa25.84■■□□□ 1.73
NUP88-203ENST00000572019 TEX13AQ9BXU3 409 aaPredicted RBP25.84■■□□□ 1.73
NUP88-203ENST00000572019 NPC1L1Q9UHC9 1359 aa25.83■■□□□ 1.73
NUP88-203ENST00000572019 DDNO94850 711 aaPredicted RBP25.83■■□□□ 1.73
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms