RNA–Protein interactions for RNA: ENST00000571249.1

CHD3-213, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 330 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-213ENST00000571249 DCAF11Q8TEB1 546 aa10.12□□□□□ -0.79
CHD3-213ENST00000571249 ZIC5Q96T25 663 aa10.12□□□□□ -0.79
CHD3-213ENST00000571249 ASAP1Q9ULH1 1129 aa10.12□□□□□ -0.79
CHD3-213ENST00000571249 NME9Q86XW9 330 aa10.11□□□□□ -0.79
CHD3-213ENST00000571249 TTLL6Q8N841 843 aa10.11□□□□□ -0.79
CHD3-213ENST00000571249 IP6K1Q92551 441 aa10.11□□□□□ -0.79
CHD3-213ENST00000571249 MAP2P11137 1827 aaKnown RBP10.11□□□□□ -0.79
CHD3-213ENST00000571249 TTC21AQ8NDW8 1320 aa10.1□□□□□ -0.79
CHD3-213ENST00000571249 CYP27B1O15528 508 aa10.1□□□□□ -0.79
CHD3-213ENST00000571249 L3MBTL3Q96JM7 780 aaPredicted RBP10.1□□□□□ -0.79
CHD3-213ENST00000571249 RANBP2P49792 3224 aaKnown RBP10.1□□□□□ -0.79
CHD3-213ENST00000571249 ADAMTS7Q9UKP4 1686 aa10.09□□□□□ -0.79
CHD3-213ENST00000571249 POLRMTO00411 1230 aaKnown RBP10.09□□□□□ -0.79
CHD3-213ENST00000571249 TRAF5O00463 557 aa10.09□□□□□ -0.79
CHD3-213ENST00000571249 EPHX2P34913 555 aa10.09□□□□□ -0.79
CHD3-213ENST00000571249 SLC4A9Q96Q91 983 aa10.09□□□□□ -0.79
CHD3-213ENST00000571249 ZNF692Q9BU19 519 aaPredicted RBP10.09□□□□□ -0.79
CHD3-213ENST00000571249 HPS5Q9UPZ3 1129 aa10.09□□□□□ -0.79
CHD3-213ENST00000571249 COLQQ9Y215 455 aaPredicted RBP10.09□□□□□ -0.79
CHD3-213ENST00000571249 TLL2Q9Y6L7 1015 aa10.09□□□□□ -0.79
CHD3-213ENST00000571249 LTN1O94822 1766 aa10.09□□□□□ -0.79
CHD3-213ENST00000571249 C21orf2O43822 256 aa10.08□□□□□ -0.8
CHD3-213ENST00000571249 FBLN1P23142 703 aa10.08□□□□□ -0.8
CHD3-213ENST00000571249 BRPF1P55201 1214 aaPredicted RBP10.08□□□□□ -0.8
CHD3-213ENST00000571249 NBPF6Q5VWK0 638 aa10.08□□□□□ -0.8
CHD3-213ENST00000571249 NBPF4Q96M43 638 aa10.08□□□□□ -0.8
CHD3-213ENST00000571249 HACL1Q9UJ83 578 aa10.08□□□□□ -0.8
CHD3-213ENST00000571249 FAM208AQ9UK61 1670 aaKnown RBP10.08□□□□□ -0.8
CHD3-213ENST00000571249 TM4SF1P30408 202 aa10.07□□□□□ -0.8
CHD3-213ENST00000571249 ADAMTSL1Q8N6G6 1762 aa10.06□□□□□ -0.8
CHD3-213ENST00000571249 USP31Q70CQ4 1352 aa10.06□□□□□ -0.8
CHD3-213ENST00000571249 RPS6KA4O75676 772 aa10.06□□□□□ -0.8
CHD3-213ENST00000571249 C2CD5Q86YS7 1000 aa10.06□□□□□ -0.8
CHD3-213ENST00000571249 VCANP13611 3396 aa10.06□□□□□ -0.8
CHD3-213ENST00000571249 RGPD2P0DJD1 1756 aa10.06□□□□□ -0.8
CHD3-213ENST00000571249 RNF123Q5XPI4 1314 aa10.06□□□□□ -0.8
CHD3-213ENST00000571249 ZNF541Q9H0D2 1346 aa10.06□□□□□ -0.8
CHD3-213ENST00000571249 ITGB4P16144 1822 aa10.05□□□□□ -0.8
CHD3-213ENST00000571249 KTN1Q86UP2 1357 aaKnown RBP10.05□□□□□ -0.8
CHD3-213ENST00000571249 SAPCD2Q86UD0 394 aa10.05□□□□□ -0.8
CHD3-213ENST00000571249 ATG3Q9NT62 314 aa10.05□□□□□ -0.8
CHD3-213ENST00000571249 DICER1Q9UPY3 1922 aaKnown RBP10.05□□□□□ -0.8
CHD3-213ENST00000571249 SCN4AP35499 1836 aa10.05□□□□□ -0.8
CHD3-213ENST00000571249 UNC80Q8N2C7 3258 aa10.04□□□□□ -0.8
CHD3-213ENST00000571249 RC3H1Q5TC82 1133 aaKnown RBP10.04□□□□□ -0.8
CHD3-213ENST00000571249 PNMA8AQ86V59 439 aaPredicted RBP10.04□□□□□ -0.8
CHD3-213ENST00000571249 MPNDQ8N594 471 aa10.04□□□□□ -0.8
CHD3-213ENST00000571249 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.04□□□□□ -0.8
CHD3-213ENST00000571249 PCDH11XQ9BZA7 1347 aa10.04□□□□□ -0.8
CHD3-213ENST00000571249 PCDH11YQ9BZA8 1340 aa10.04□□□□□ -0.8
CHD3-213ENST00000571249 CENPJQ9HC77 1338 aaPredicted RBP10.04□□□□□ -0.8
CHD3-213ENST00000571249 HOXC9P31274 260 aa10.03□□□□□ -0.8
CHD3-213ENST00000571249 CTU1Q7Z7A3 348 aaKnown RBP10.03□□□□□ -0.8
CHD3-213ENST00000571249 RAPGEF4Q8WZA2 1011 aa10.03□□□□□ -0.8
CHD3-213ENST00000571249 STAC3Q96MF2 364 aa10.03□□□□□ -0.8
CHD3-213ENST00000571249 TAOK3Q9H2K8 898 aa10.03□□□□□ -0.8
CHD3-213ENST00000571249 CD163L1Q9NR16 1453 aa10.03□□□□□ -0.8
CHD3-213ENST00000571249 TATP17735 454 aaPredicted RBP10.02□□□□□ -0.81
CHD3-213ENST00000571249 ZNF622Q969S3 477 aaKnown RBP eCLIP10.02□□□□□ -0.813e-6■■■■□ 25
CHD3-213ENST00000571249 RBM42Q9BTD8 480 aaKnown RBP10.02□□□□□ -0.81
CHD3-213ENST00000571249 CGNL1Q0VF96 1302 aa10.02□□□□□ -0.81
CHD3-213ENST00000571249 USP42Q9H9J4 1324 aaKnown RBP10.02□□□□□ -0.81
CHD3-213ENST00000571249 H0YIN7 160 aa10.01□□□□□ -0.81
CHD3-213ENST00000571249 TRPA1O75762 1119 aa10.01□□□□□ -0.81
CHD3-213ENST00000571249 MNX1P50219 401 aaPredicted RBP10.01□□□□□ -0.81
CHD3-213ENST00000571249 VASPP50552 380 aaPredicted RBP10.01□□□□□ -0.81
CHD3-213ENST00000571249 TMOD3Q9NYL9 352 aa10.01□□□□□ -0.81
CHD3-213ENST00000571249 CARMIL3Q8ND23 1372 aa10.01□□□□□ -0.81
CHD3-213ENST00000571249 FER1L6Q2WGJ9 1857 aa10□□□□□ -0.81
CHD3-213ENST00000571249 CELF2O95319 508 aaKnown RBP10□□□□□ -0.81
CHD3-213ENST00000571249 NFIXQ14938 502 aa10□□□□□ -0.81
CHD3-213ENST00000571249 MYH14Q7Z406 1995 aaKnown RBP10□□□□□ -0.81
CHD3-213ENST00000571249 MAP3K19Q56UN5 1328 aa10□□□□□ -0.81
CHD3-213ENST00000571249 CNTNAP4Q9C0A0 1308 aa10□□□□□ -0.81
CHD3-213ENST00000571249 LTBP3Q9NS15 1303 aa10□□□□□ -0.81
CHD3-213ENST00000571249 NKX1-1Q15270 411 aaPredicted RBP9.99□□□□□ -0.81
CHD3-213ENST00000571249 USPL1Q5W0Q7 1092 aa9.99□□□□□ -0.81
CHD3-213ENST00000571249 BICDL1Q6ZP65 573 aa9.99□□□□□ -0.81
CHD3-213ENST00000571249 SYNE4Q8N205 404 aa9.99□□□□□ -0.81
CHD3-213ENST00000571249 COL25A1Q9BXS0 654 aaPredicted RBP9.99□□□□□ -0.81
CHD3-213ENST00000571249 RNF186Q9NXI6 227 aa9.99□□□□□ -0.81
CHD3-213ENST00000571249 LAMA3Q16787 3333 aa9.99□□□□□ -0.81
CHD3-213ENST00000571249 SPTBN5Q9NRC6 3674 aaKnown RBP9.99□□□□□ -0.81
CHD3-213ENST00000571249 KDRP35968 1356 aa9.99□□□□□ -0.81
CHD3-213ENST00000571249 POTEFA5A3E0 1075 aa9.98□□□□□ -0.81
CHD3-213ENST00000571249 SERPINB2P05120 415 aa9.98□□□□□ -0.81
CHD3-213ENST00000571249 AMPHP49418 695 aa9.98□□□□□ -0.81
CHD3-213ENST00000571249 SAMD1Q6SPF0 538 aaPredicted RBP9.98□□□□□ -0.81
CHD3-213ENST00000571249 CCDC24Q8N4L8 307 aa9.98□□□□□ -0.81
CHD3-213ENST00000571249 SBNO2Q9Y2G9 1366 aa9.98□□□□□ -0.81
CHD3-213ENST00000571249 KIAA0100Q14667 2235 aaKnown RBP9.97□□□□□ -0.81
CHD3-213ENST00000571249 DLEC1Q9Y238 1755 aa9.97□□□□□ -0.81
CHD3-213ENST00000571249 EPS15P42566 896 aa9.97□□□□□ -0.81
CHD3-213ENST00000571249 ZNF277Q9NRM2 450 aaPredicted RBP9.97□□□□□ -0.81
CHD3-213ENST00000571249 EVC2Q86UK5 1308 aa9.97□□□□□ -0.81
CHD3-213ENST00000571249 CENPFP49454 3210 aa9.96□□□□□ -0.81
CHD3-213ENST00000571249 AFDNP55196 1824 aaKnown RBP9.96□□□□□ -0.81
CHD3-213ENST00000571249 CRKLP46109 303 aaKnown RBP9.96□□□□□ -0.82
CHD3-213ENST00000571249 NOGQ13253 232 aa9.96□□□□□ -0.82
CHD3-213ENST00000571249 AKAP4Q5JQC9 854 aa9.96□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms