RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 PUS7Q96PZ0 661 aaKnown RBP18.01■□□□□ 0.47
CIITA-204ENST00000570546 ANO10Q9NW15 660 aa18.01■□□□□ 0.47
CIITA-204ENST00000570546 GCC2Q8IWJ2 1684 aa18.01■□□□□ 0.47
CIITA-204ENST00000570546 PDE1AP54750 535 aa18.01■□□□□ 0.47
CIITA-204ENST00000570546 IDH1O75874 414 aaKnown RBP18■□□□□ 0.47
CIITA-204ENST00000570546 PHF8Q9UPP1 1060 aa18■□□□□ 0.47
CIITA-204ENST00000570546 CKAP2LQ8IYA6 745 aa18■□□□□ 0.47
CIITA-204ENST00000570546 ZBTB40Q9NUA8 1239 aa18■□□□□ 0.47
CIITA-204ENST00000570546 AKAP2Q9Y2D5 859 aa18■□□□□ 0.47
CIITA-204ENST00000570546 IFIT1P09914 478 aaKnown RBP18■□□□□ 0.47
CIITA-204ENST00000570546 MCM5P33992 734 aa18■□□□□ 0.47
CIITA-204ENST00000570546 PPIP5K1Q6PFW1 1433 aa18■□□□□ 0.47
CIITA-204ENST00000570546 LRSAM1Q6UWE0 723 aa18■□□□□ 0.47
CIITA-204ENST00000570546 UBAC1Q9BSL1 405 aa18■□□□□ 0.47
CIITA-204ENST00000570546 PRDM11Q9NQV5 511 aa18■□□□□ 0.47
CIITA-204ENST00000570546 ZNHIT6Q9NWK9 470 aaKnown RBP17.99■□□□□ 0.47
CIITA-204ENST00000570546 C16orf71Q8IYS4 520 aaPredicted RBP17.99■□□□□ 0.47
CIITA-204ENST00000570546 CDR1P51861 262 aa17.99■□□□□ 0.47
CIITA-204ENST00000570546 BLMP54132 1417 aaPredicted RBP17.99■□□□□ 0.47
CIITA-204ENST00000570546 ADCY5O95622 1261 aa17.99■□□□□ 0.47
CIITA-204ENST00000570546 SMC5Q8IY18 1101 aa17.99■□□□□ 0.47
CIITA-204ENST00000570546 AIDAQ96BJ3 306 aa17.99■□□□□ 0.47
CIITA-204ENST00000570546 CCDC43Q96MW1 224 aaKnown RBP17.99■□□□□ 0.47
CIITA-204ENST00000570546 POLKQ9UBT6 870 aa17.99■□□□□ 0.47
CIITA-204ENST00000570546 CLIP2Q9UDT6 1046 aa17.99■□□□□ 0.47
CIITA-204ENST00000570546 ESYT1Q9BSJ8 1104 aa17.98■□□□□ 0.47
CIITA-204ENST00000570546 DDX19AQ9NUU7 478 aaKnown RBP17.98■□□□□ 0.47
CIITA-204ENST00000570546 SAMD9Q5K651 1589 aa17.98■□□□□ 0.47
CIITA-204ENST00000570546 UBE2HP62256 183 aa17.98■□□□□ 0.47
CIITA-204ENST00000570546 PANK2Q9BZ23 570 aa17.98■□□□□ 0.47
CIITA-204ENST00000570546 METTL24Q5JXM2 366 aa17.98■□□□□ 0.47
CIITA-204ENST00000570546 PI4KAP2A4QPH2 592 aa17.98■□□□□ 0.47
CIITA-204ENST00000570546 VAMP4O75379 141 aa17.98■□□□□ 0.47
CIITA-204ENST00000570546 STIM1Q13586 685 aa17.98■□□□□ 0.47
CIITA-204ENST00000570546 PI4KAP1Q8N8J0 262 aa17.98■□□□□ 0.47
CIITA-204ENST00000570546 RHPN1Q8TCX5 695 aa17.98■□□□□ 0.47
CIITA-204ENST00000570546 UVSSAQ2YD98 709 aa17.97■□□□□ 0.47
CIITA-204ENST00000570546 CFAP100Q494V2 611 aa17.97■□□□□ 0.47
CIITA-204ENST00000570546 PKNOX2Q96KN3 472 aa17.97■□□□□ 0.47
CIITA-204ENST00000570546 CTAGE5O15320 804 aa17.97■□□□□ 0.47
CIITA-204ENST00000570546 GUCY1B3Q02153 619 aa17.97■□□□□ 0.47
CIITA-204ENST00000570546 RAB3GAP1Q15042 981 aa17.97■□□□□ 0.47
CIITA-204ENST00000570546 PTPN14Q15678 1187 aa17.97■□□□□ 0.47
CIITA-204ENST00000570546 HSP90AB2PQ58FF8 381 aa17.97■□□□□ 0.47
CIITA-204ENST00000570546 TSPYL6Q8N831 410 aa17.97■□□□□ 0.47
CIITA-204ENST00000570546 NPC1L1Q9UHC9 1359 aa17.97■□□□□ 0.47
CIITA-204ENST00000570546 MAST1Q9Y2H9 1570 aa17.97■□□□□ 0.47
CIITA-204ENST00000570546 C8orf76Q96K31 380 aa17.96■□□□□ 0.47
CIITA-204ENST00000570546 DISP1Q96F81 1524 aa17.96■□□□□ 0.47
CIITA-204ENST00000570546 ZSCAN22P10073 491 aaPredicted RBP17.96■□□□□ 0.47
CIITA-204ENST00000570546 ZNF518AQ6AHZ1 1483 aa17.96■□□□□ 0.47
CIITA-204ENST00000570546 INSRP06213 1382 aa17.96■□□□□ 0.47
CIITA-204ENST00000570546 SFPQP23246 707 aaKnown RBP eCLIP17.96■□□□□ 0.46
CIITA-204ENST00000570546 TFIP11Q9UBB9 837 aaKnown RBP17.96■□□□□ 0.46
CIITA-204ENST00000570546 KIF2AO00139 706 aaPredicted RBP17.95■□□□□ 0.46
CIITA-204ENST00000570546 CLCN1P35523 988 aa17.95■□□□□ 0.46
CIITA-204ENST00000570546 A0A1W2PP64 1363 aa17.95■□□□□ 0.46
CIITA-204ENST00000570546 ANAPC15P60006 121 aa17.95■□□□□ 0.46
CIITA-204ENST00000570546 SAMD1Q6SPF0 538 aaPredicted RBP17.95■□□□□ 0.46
CIITA-204ENST00000570546 DCTPP1Q9H773 170 aa17.95■□□□□ 0.46
CIITA-204ENST00000570546 LEKR1Q6ZMV7 388 aa17.95■□□□□ 0.46
CIITA-204ENST00000570546 RAI14Q9P0K7 980 aa17.95■□□□□ 0.46
CIITA-204ENST00000570546 CEP131Q9UPN4 1083 aa17.95■□□□□ 0.46
CIITA-204ENST00000570546 ZFYVE9O95405 1425 aa17.95■□□□□ 0.46
CIITA-204ENST00000570546 LRP2BPQ9P2M1 347 aa17.95■□□□□ 0.46
CIITA-204ENST00000570546 ATP8B2P98198 1209 aa17.94■□□□□ 0.46
CIITA-204ENST00000570546 CCAR1Q8IX12 1150 aaKnown RBP17.94■□□□□ 0.46
CIITA-204ENST00000570546 ASXL2Q76L83 1435 aa17.94■□□□□ 0.46
CIITA-204ENST00000570546 EIF4A2Q14240 407 aaKnown RBP17.94■□□□□ 0.46
CIITA-204ENST00000570546 PTCD1O75127 700 aaKnown RBP17.94■□□□□ 0.46
CIITA-204ENST00000570546 ERLIN1O75477 346 aa17.94■□□□□ 0.46
CIITA-204ENST00000570546 WDR7Q9Y4E6 1490 aa17.94■□□□□ 0.46
CIITA-204ENST00000570546 A0A087WZG4 1122 aa17.93■□□□□ 0.46
CIITA-204ENST00000570546 CCT2P78371 535 aaKnown RBP17.93■□□□□ 0.46
CIITA-204ENST00000570546 CEP85Q6P2H3 762 aa17.93■□□□□ 0.46
CIITA-204ENST00000570546 ZRANB1Q9UGI0 708 aa17.93■□□□□ 0.46
CIITA-204ENST00000570546 STARD3NLO95772 234 aa17.93■□□□□ 0.46
CIITA-204ENST00000570546 IKQ13123 557 aaPredicted RBP17.93■□□□□ 0.46
CIITA-204ENST00000570546 PBRM1Q86U86 1689 aa17.93■□□□□ 0.46
CIITA-204ENST00000570546 HMG20BQ9P0W2 317 aa17.93■□□□□ 0.46
CIITA-204ENST00000570546 ABCC1P33527 1531 aa17.93■□□□□ 0.46
CIITA-204ENST00000570546 MEX3CQ5U5Q3 659 aaKnown RBP17.92■□□□□ 0.46
CIITA-204ENST00000570546 PLEKHM2Q8IWE5 1019 aa17.92■□□□□ 0.46
CIITA-204ENST00000570546 FSIP1Q8NA03 581 aa17.92■□□□□ 0.46
CIITA-204ENST00000570546 PATL2C9JE40 543 aaKnown RBP17.92■□□□□ 0.46
CIITA-204ENST00000570546 KRT18P05783 430 aaKnown RBP17.92■□□□□ 0.46
CIITA-204ENST00000570546 CNPY2Q9Y2B0 182 aa17.92■□□□□ 0.46
CIITA-204ENST00000570546 MAGI3Q5TCQ9 1506 aa17.92■□□□□ 0.46
CIITA-204ENST00000570546 TTC21AQ8NDW8 1320 aa17.92■□□□□ 0.46
CIITA-204ENST00000570546 CT47A1Q5JQC4 288 aaPredicted RBP17.92■□□□□ 0.46
CIITA-204ENST00000570546 USP48Q86UV5 1035 aa17.92■□□□□ 0.46
CIITA-204ENST00000570546 IGHMBP2P38935 993 aaKnown RBP17.91■□□□□ 0.46
CIITA-204ENST00000570546 UBXN4Q92575 508 aa17.91■□□□□ 0.46
CIITA-204ENST00000570546 PHACTR3Q96KR7 559 aa17.91■□□□□ 0.46
CIITA-204ENST00000570546 NEK1Q96PY6 1258 aa17.91■□□□□ 0.46
CIITA-204ENST00000570546 PDCL3Q9H2J4 239 aa17.91■□□□□ 0.46
CIITA-204ENST00000570546 TNNT1P13805 278 aa17.91■□□□□ 0.46
CIITA-204ENST00000570546 KIF18AQ8NI77 898 aa17.91■□□□□ 0.46
CIITA-204ENST00000570546 CHPF2Q9P2E5 772 aa17.91■□□□□ 0.46
CIITA-204ENST00000570546 SPATA31E1Q6ZUB1 1445 aa17.91■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms