RNA–Protein interactions for RNA: ENST00000570359.1

VPS53-206, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 2,781 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-206ENST00000570359 A0A0G2JS52 829 aa12.21□□□□□ -0.46
VPS53-206ENST00000570359 GSE1Q14687 1217 aa12.21□□□□□ -0.46
VPS53-206ENST00000570359 BEND3Q5T5X7 828 aa12.21□□□□□ -0.46
VPS53-206ENST00000570359 CCDC9Q9Y3X0 531 aaKnown RBP12.21□□□□□ -0.46
VPS53-206ENST00000570359 ADCY9O60503 1353 aa12.21□□□□□ -0.46
VPS53-206ENST00000570359 TTC5Q8N0Z6 440 aa12.2□□□□□ -0.46
VPS53-206ENST00000570359 ZNF496Q96IT1 587 aaPredicted RBP12.2□□□□□ -0.46
VPS53-206ENST00000570359 SLIT3O75094 1523 aa12.2□□□□□ -0.46
VPS53-206ENST00000570359 PHKG2P15735 406 aa12.2□□□□□ -0.46
VPS53-206ENST00000570359 ZNF790Q6PG37 636 aa12.2□□□□□ -0.46
VPS53-206ENST00000570359 KLHDC4Q8TBB5 520 aa12.2□□□□□ -0.46
VPS53-206ENST00000570359 ANO2Q9NQ90 1003 aa12.2□□□□□ -0.46
VPS53-206ENST00000570359 SPG7Q9UQ90 795 aa12.2□□□□□ -0.46
VPS53-206ENST00000570359 TRPM3Q9HCF6 1732 aaPredicted RBP12.2□□□□□ -0.46
VPS53-206ENST00000570359 USP54Q70EL1 1684 aa12.2□□□□□ -0.46
VPS53-206ENST00000570359 CYP27B1O15528 508 aa12.19□□□□□ -0.46
VPS53-206ENST00000570359 RTN4Q9NQC3 1192 aaKnown RBP12.19□□□□□ -0.46
VPS53-206ENST00000570359 PTCD1O75127 700 aaKnown RBP12.19□□□□□ -0.46
VPS53-206ENST00000570359 UBE2Q2Q8WVN8 375 aa12.19□□□□□ -0.46
VPS53-206ENST00000570359 USP16Q9Y5T5 823 aa12.19□□□□□ -0.46
VPS53-206ENST00000570359 CABP4P57796 275 aa12.18□□□□□ -0.46
VPS53-206ENST00000570359 FOXD4L5Q5VV16 416 aaPredicted RBP12.18□□□□□ -0.46
VPS53-206ENST00000570359 XAGE3Q8WTP9 111 aa12.18□□□□□ -0.46
VPS53-206ENST00000570359 FOXD4L4Q8WXT5 416 aaPredicted RBP12.18□□□□□ -0.46
VPS53-206ENST00000570359 SLC52A2Q9HAB3 445 aa12.18□□□□□ -0.46
VPS53-206ENST00000570359 BABAM1Q9NWV8 329 aa12.18□□□□□ -0.46
VPS53-206ENST00000570359 IBTKQ9P2D0 1353 aaPredicted RBP12.18□□□□□ -0.46
VPS53-206ENST00000570359 ATP5J2-PTCD1G3V325 749 aa12.18□□□□□ -0.46
VPS53-206ENST00000570359 IFNL2Q8IZJ0 200 aa12.18□□□□□ -0.46
VPS53-206ENST00000570359 MYD88Q99836 296 aa12.18□□□□□ -0.46
VPS53-206ENST00000570359 SPATA31A3Q5VYP0 1347 aa12.18□□□□□ -0.46
VPS53-206ENST00000570359 COPS6Q7L5N1 327 aa12.18□□□□□ -0.46
VPS53-206ENST00000570359 RHPN1Q8TCX5 695 aa12.18□□□□□ -0.46
VPS53-206ENST00000570359 USP26Q9BXU7 913 aa12.18□□□□□ -0.46
VPS53-206ENST00000570359 CHMP5Q9NZZ3 219 aa12.18□□□□□ -0.46
VPS53-206ENST00000570359 TNS3Q68CZ2 1445 aa12.17□□□□□ -0.46
VPS53-206ENST00000570359 KDM6AO15550 1401 aaPredicted RBP12.17□□□□□ -0.46
VPS53-206ENST00000570359 K7ELQ4 463 aaPredicted RBP12.17□□□□□ -0.46
VPS53-206ENST00000570359 ERC2O15083 957 aa12.17□□□□□ -0.46
VPS53-206ENST00000570359 EVA1CP58658 441 aa12.17□□□□□ -0.46
VPS53-206ENST00000570359 KSR2Q6VAB6 950 aa12.17□□□□□ -0.46
VPS53-206ENST00000570359 SLAIN2Q9P270 581 aa12.17□□□□□ -0.46
VPS53-206ENST00000570359 AK9Q5TCS8 1911 aa12.16□□□□□ -0.46
VPS53-206ENST00000570359 SUCLG2Q96I99 432 aa12.16□□□□□ -0.46
VPS53-206ENST00000570359 KIF1AQ12756 1690 aa12.16□□□□□ -0.46
VPS53-206ENST00000570359 LMO7Q8WWI1 1683 aa12.16□□□□□ -0.46
VPS53-206ENST00000570359 KDM4FA0A1W2PPD8 638 aa12.15□□□□□ -0.46
VPS53-206ENST00000570359 DTNBO60941 627 aa12.15□□□□□ -0.46
VPS53-206ENST00000570359 SSH3Q8TE77 659 aa12.15□□□□□ -0.46
VPS53-206ENST00000570359 IL25Q9H293 177 aa12.15□□□□□ -0.46
VPS53-206ENST00000570359 BICC1Q9H694 974 aaKnown RBP12.15□□□□□ -0.46
VPS53-206ENST00000570359 CHMP3Q9Y3E7 222 aa12.15□□□□□ -0.46
VPS53-206ENST00000570359 KDM3BQ7LBC6 1761 aa12.15□□□□□ -0.46
VPS53-206ENST00000570359 HYPKQ9NX55 129 aa12.15□□□□□ -0.46
VPS53-206ENST00000570359 BRPF3Q9ULD4 1205 aa12.15□□□□□ -0.46
VPS53-206ENST00000570359 REC8O95072 547 aa12.14□□□□□ -0.47
VPS53-206ENST00000570359 DDX58O95786 925 aaKnown RBP12.14□□□□□ -0.47
VPS53-206ENST00000570359 HOXB7P09629 217 aa12.14□□□□□ -0.47
VPS53-206ENST00000570359 LARP6Q9BRS8 491 aaKnown RBP12.14□□□□□ -0.47
VPS53-206ENST00000570359 UPF3BQ9BZI7 483 aaKnown RBP12.14□□□□□ -0.47
VPS53-206ENST00000570359 DDX21Q9NR30 783 aaKnown RBP eCLIP12.14□□□□□ -0.47
VPS53-206ENST00000570359 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.14□□□□□ -0.47
VPS53-206ENST00000570359 ALS2Q96Q42 1657 aa12.14□□□□□ -0.47
VPS53-206ENST00000570359 PDIA6Q15084 440 aa12.14□□□□□ -0.47
VPS53-206ENST00000570359 LARP1Q6PKG0 1096 aaKnown RBP12.14□□□□□ -0.47
VPS53-206ENST00000570359 CCDC8Q9H0W5 538 aaPredicted RBP12.14□□□□□ -0.47
VPS53-206ENST00000570359 PALD1Q9ULE6 856 aa12.14□□□□□ -0.47
VPS53-206ENST00000570359 CACNA1FO60840 1977 aa12.13□□□□□ -0.47
VPS53-206ENST00000570359 SSFA2P28290 1259 aa12.13□□□□□ -0.47
VPS53-206ENST00000570359 MCM4P33991 863 aa12.13□□□□□ -0.47
VPS53-206ENST00000570359 CWC27Q6UX04 472 aaKnown RBP12.13□□□□□ -0.47
VPS53-206ENST00000570359 IL27Q8NEV9 243 aa12.13□□□□□ -0.47
VPS53-206ENST00000570359 ESYT1Q9BSJ8 1104 aa12.13□□□□□ -0.47
VPS53-206ENST00000570359 GRM8O00222 908 aa12.13□□□□□ -0.47
VPS53-206ENST00000570359 NEK4P51957 841 aa12.13□□□□□ -0.47
VPS53-206ENST00000570359 NEXNQ0ZGT2 675 aa12.13□□□□□ -0.47
VPS53-206ENST00000570359 TPRNQ4KMQ1 711 aa12.13□□□□□ -0.47
VPS53-206ENST00000570359 AACSQ86V21 672 aa12.13□□□□□ -0.47
VPS53-206ENST00000570359 TNPO1Q92973 898 aaKnown RBP12.13□□□□□ -0.47
VPS53-206ENST00000570359 NCAPD2Q15021 1401 aa12.13□□□□□ -0.47
VPS53-206ENST00000570359 CHMLP26374 656 aa12.13□□□□□ -0.47
VPS53-206ENST00000570359 KIF1BPQ96EK5 621 aa12.13□□□□□ -0.47
VPS53-206ENST00000570359 IGKV5-2P06315 115 aa12.12□□□□□ -0.47
VPS53-206ENST00000570359 IFIT2P09913 472 aaKnown RBP12.12□□□□□ -0.47
VPS53-206ENST00000570359 FOXD4L6Q3SYB3 417 aaPredicted RBP12.12□□□□□ -0.47
VPS53-206ENST00000570359 FOXD4L3Q6VB84 417 aaPredicted RBP12.12□□□□□ -0.47
VPS53-206ENST00000570359 UBE3BQ7Z3V4 1068 aa12.12□□□□□ -0.47
VPS53-206ENST00000570359 ZGPATQ8N5A5 531 aaKnown RBP12.12□□□□□ -0.47
VPS53-206ENST00000570359 SNX21Q969T3 373 aa12.12□□□□□ -0.47
VPS53-206ENST00000570359 DCAF5Q96JK2 942 aa12.12□□□□□ -0.47
VPS53-206ENST00000570359 CHAMP1Q96JM3 812 aa12.12□□□□□ -0.47
VPS53-206ENST00000570359 ZBTB3Q9H5J0 574 aa12.12□□□□□ -0.47
VPS53-206ENST00000570359 PKP1Q13835 747 aa12.12□□□□□ -0.47
VPS53-206ENST00000570359 POLA2Q14181 598 aa12.12□□□□□ -0.47
VPS53-206ENST00000570359 RABEP1Q15276 862 aa12.12□□□□□ -0.47
VPS53-206ENST00000570359 ZCRB1Q8TBF4 217 aaKnown RBP12.12□□□□□ -0.47
VPS53-206ENST00000570359 FMNL2Q96PY5 1086 aa12.12□□□□□ -0.47
VPS53-206ENST00000570359 SALL3Q9BXA9 1300 aa12.11□□□□□ -0.47
VPS53-206ENST00000570359 PHRF1Q9P1Y6 1649 aaKnown RBP12.11□□□□□ -0.47
VPS53-206ENST00000570359 A1BGP04217 495 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms