RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 HSP90AB1P08238 724 aaKnown RBP25.28■■□□□ 1.64
CLK3-227ENST00000570296 LBX1P52954 281 aa25.28■■□□□ 1.64
CLK3-227ENST00000570296 MLLT1Q03111 559 aaPredicted RBP25.28■■□□□ 1.64
CLK3-227ENST00000570296 WASHC2AQ641Q2 1341 aa25.27■■□□□ 1.64
CLK3-227ENST00000570296 VEGFBP49765 207 aa25.26■■□□□ 1.63
CLK3-227ENST00000570296 PASKQ96RG2 1323 aa25.26■■□□□ 1.63
CLK3-227ENST00000570296 TJP1Q07157 1748 aa25.26■■□□□ 1.63
CLK3-227ENST00000570296 ST20-MTHFSA0A0A6YYL1 179 aa25.24■■□□□ 1.63
CLK3-227ENST00000570296 PPM1GO15355 546 aaPredicted RBP25.24■■□□□ 1.63
CLK3-227ENST00000570296 ZPR1O75312 459 aa25.24■■□□□ 1.63
CLK3-227ENST00000570296 RGS19P49795 217 aa25.24■■□□□ 1.63
CLK3-227ENST00000570296 FER1L6Q2WGJ9 1857 aa25.22■■□□□ 1.63
CLK3-227ENST00000570296 PTCD1O75127 700 aaKnown RBP25.22■■□□□ 1.63
CLK3-227ENST00000570296 POTEIP0CG38 1075 aa25.22■■□□□ 1.63
CLK3-227ENST00000570296 POTEJP0CG39 1038 aa25.22■■□□□ 1.63
CLK3-227ENST00000570296 ERFEQ4G0M1 354 aa25.22■■□□□ 1.63
CLK3-227ENST00000570296 TMEM88BA6NKF7 163 aa25.21■■□□□ 1.63
CLK3-227ENST00000570296 HSPA8P11142 646 aaKnown RBP25.21■■□□□ 1.63
CLK3-227ENST00000570296 CABP4P57796 275 aa25.21■■□□□ 1.63
CLK3-227ENST00000570296 USPL1Q5W0Q7 1092 aa25.21■■□□□ 1.63
CLK3-227ENST00000570296 C2CD5Q86YS7 1000 aa25.2■■□□□ 1.62
CLK3-227ENST00000570296 SCN4AP35499 1836 aa25.19■■□□□ 1.62
CLK3-227ENST00000570296 H0YIN7 160 aa25.19■■□□□ 1.62
CLK3-227ENST00000570296 NFIXQ14938 502 aa25.19■■□□□ 1.62
CLK3-227ENST00000570296 INTS5Q6P9B9 1019 aaKnown RBP25.19■■□□□ 1.62
CLK3-227ENST00000570296 LDHDQ86WU2 507 aa25.19■■□□□ 1.62
CLK3-227ENST00000570296 IQCA1LA6NCM1 817 aa25.17■■□□□ 1.62
CLK3-227ENST00000570296 PDE4DIPQ5VU43 2346 aa25.15■■□□□ 1.62
CLK3-227ENST00000570296 SOS1Q07889 1333 aaPredicted RBP25.15■■□□□ 1.62
CLK3-227ENST00000570296 LTBP3Q9NS15 1303 aa25.15■■□□□ 1.62
CLK3-227ENST00000570296 CCDC85CA6NKD9 419 aa25.15■■□□□ 1.62
CLK3-227ENST00000570296 SERPINB2P05120 415 aa25.15■■□□□ 1.62
CLK3-227ENST00000570296 MAP2K1Q02750 393 aaPredicted RBP25.15■■□□□ 1.62
CLK3-227ENST00000570296 DDNO94850 711 aaPredicted RBP25.14■■□□□ 1.62
CLK3-227ENST00000570296 PLEKHO1Q53GL0 409 aaPredicted RBP25.14■■□□□ 1.62
CLK3-227ENST00000570296 NARFQ9UHQ1 456 aa25.14■■□□□ 1.62
CLK3-227ENST00000570296 RASSF10A6NK89 507 aa25.13■■□□□ 1.61
CLK3-227ENST00000570296 ITGBL1O95965 494 aaPredicted RBP25.13■■□□□ 1.61
CLK3-227ENST00000570296 ZNF530Q6P9A1 599 aaPredicted RBP25.12■■□□□ 1.61
CLK3-227ENST00000570296 L3MBTL3Q96JM7 780 aaPredicted RBP25.12■■□□□ 1.61
CLK3-227ENST00000570296 PDZRN3Q9UPQ7 1066 aa25.12■■□□□ 1.61
CLK3-227ENST00000570296 CARMIL3Q8ND23 1372 aa25.12■■□□□ 1.61
CLK3-227ENST00000570296 EIF4A2Q14240 407 aaKnown RBP25.11■■□□□ 1.61
CLK3-227ENST00000570296 TAOK3Q9H2K8 898 aa25.11■■□□□ 1.61
CLK3-227ENST00000570296 TAF1DQ9H5J8 278 aaPredicted RBP25.11■■□□□ 1.61
CLK3-227ENST00000570296 ANKRD31Q8N7Z5 1873 aa25.11■■□□□ 1.61
CLK3-227ENST00000570296 C21orf2O43822 256 aa25.1■■□□□ 1.61
CLK3-227ENST00000570296 MTHFSP49914 203 aa25.1■■□□□ 1.61
CLK3-227ENST00000570296 DEFB115Q30KQ5 88 aa25.1■■□□□ 1.61
CLK3-227ENST00000570296 AMOTQ4VCS5 1084 aa25.1■■□□□ 1.61
CLK3-227ENST00000570296 NFATC2IPQ8NCF5 419 aa25.1■■□□□ 1.61
CLK3-227ENST00000570296 CARD14Q9BXL6 1004 aa25.1■■□□□ 1.61
CLK3-227ENST00000570296 POLKQ9UBT6 870 aa25.1■■□□□ 1.61
CLK3-227ENST00000570296 COL15A1P39059 1388 aa25.09■■□□□ 1.61
CLK3-227ENST00000570296 ZNF622Q969S3 477 aaKnown RBP eCLIP25.08■■□□□ 1.613e-15■□□□□ 10.1
CLK3-227ENST00000570296 COL11A2P13942 1736 aaPredicted RBP25.08■■□□□ 1.61
CLK3-227ENST00000570296 WDR33Q9C0J8 1336 aaKnown RBP25.08■■□□□ 1.6
CLK3-227ENST00000570296 THSD7BQ9C0I4 1608 aa25.08■■□□□ 1.6
CLK3-227ENST00000570296 ADAMTSL1Q8N6G6 1762 aa25.08■■□□□ 1.6
CLK3-227ENST00000570296 TNRC18O15417 2968 aaPredicted RBP25.07■■□□□ 1.6
CLK3-227ENST00000570296 DNAJC10Q8IXB1 793 aa25.07■■□□□ 1.6
CLK3-227ENST00000570296 BCL2L12Q9HB09 334 aa25.07■■□□□ 1.6
CLK3-227ENST00000570296 CDCA8Q53HL2 280 aa25.06■■□□□ 1.6
CLK3-227ENST00000570296 SCN11AQ9UI33 1791 aa25.05■■□□□ 1.6
CLK3-227ENST00000570296 PDE6BP35913 854 aa25.05■■□□□ 1.6
CLK3-227ENST00000570296 C1orf141Q5JVX7 400 aa25.05■■□□□ 1.6
CLK3-227ENST00000570296 ZNF219Q9P2Y4 722 aaPredicted RBP25.05■■□□□ 1.6
CLK3-227ENST00000570296 CYP19A1P11511 503 aaPredicted RBP25.04■■□□□ 1.6
CLK3-227ENST00000570296 BRIP1Q9BX63 1249 aa25.04■■□□□ 1.6
CLK3-227ENST00000570296 ARFGEF2Q9Y6D5 1785 aa25.03■■□□□ 1.6
CLK3-227ENST00000570296 EAPPQ56P03 285 aaPredicted RBP25.02■■□□□ 1.6
CLK3-227ENST00000570296 SOGA3Q5TF21 947 aa25.02■■□□□ 1.6
CLK3-227ENST00000570296 SLX4Q8IY92 1834 aa25.02■■□□□ 1.6
CLK3-227ENST00000570296 CACNA1SQ13698 1873 aa25.01■■□□□ 1.59
CLK3-227ENST00000570296 BEGAINQ9BUH8 593 aa25.01■■□□□ 1.59
CLK3-227ENST00000570296 HACL1Q9UJ83 578 aa25■■□□□ 1.59
CLK3-227ENST00000570296 ABT1Q9ULW3 272 aaKnown RBP25■■□□□ 1.59
CLK3-227ENST00000570296 CLEC11AQ9Y240 323 aa25■■□□□ 1.59
CLK3-227ENST00000570296 ZBTB1Q9Y2K1 713 aa25■■□□□ 1.59
CLK3-227ENST00000570296 CNKSR1Q969H4 720 aa24.99■■□□□ 1.59
CLK3-227ENST00000570296 PNMA8AQ86V59 439 aaPredicted RBP24.98■■□□□ 1.59
CLK3-227ENST00000570296 CNTROBQ8N137 903 aa24.98■■□□□ 1.59
CLK3-227ENST00000570296 BICDL1Q6ZP65 573 aa24.97■■□□□ 1.59
CLK3-227ENST00000570296 EPHX2P34913 555 aa24.96■■□□□ 1.59
CLK3-227ENST00000570296 ECE1P42892 770 aa24.95■■□□□ 1.58
CLK3-227ENST00000570296 STYK1Q6J9G0 422 aa24.95■■□□□ 1.58
CLK3-227ENST00000570296 PRR5LQ6MZQ0 368 aa24.95■■□□□ 1.58
CLK3-227ENST00000570296 PRPF40BQ6NWY9 871 aaKnown RBP24.95■■□□□ 1.58
CLK3-227ENST00000570296 MAP1SQ66K74 1059 aaPredicted RBP24.94■■□□□ 1.58
CLK3-227ENST00000570296 CAPNS2Q96L46 248 aa24.94■■□□□ 1.58
CLK3-227ENST00000570296 CFAP44Q96MT7 982 aa24.94■■□□□ 1.58
CLK3-227ENST00000570296 SLC52A2Q9HAB3 445 aa24.94■■□□□ 1.58
CLK3-227ENST00000570296 SCN7AQ01118 1682 aa24.94■■□□□ 1.58
CLK3-227ENST00000570296 ZNF541Q9H0D2 1346 aa24.93■■□□□ 1.58
CLK3-227ENST00000570296 A0A087WZG4 1122 aa24.93■■□□□ 1.58
CLK3-227ENST00000570296 MRC1P22897 1456 aa24.93■■□□□ 1.58
CLK3-227ENST00000570296 TBC1D9BQ66K14 1250 aa24.92■■□□□ 1.58
CLK3-227ENST00000570296 VSIG10Q8N0Z9 540 aa24.92■■□□□ 1.58
CLK3-227ENST00000570296 LTBP1Q14766 1721 aa24.92■■□□□ 1.58
CLK3-227ENST00000570296 GPR101Q96P66 508 aaPredicted RBP24.91■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms