RNA–Protein interactions for RNA: ENST00000569117.1

CDH3-210, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 576 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-210ENST00000569117 MYH16Q9H6N6 1097 aa13.58□□□□□ -0.24
CDH3-210ENST00000569117 CREBZFQ9NS37 354 aa13.58□□□□□ -0.24
CDH3-210ENST00000569117 TMOD3Q9NYL9 352 aa13.58□□□□□ -0.24
CDH3-210ENST00000569117 C5P01031 1676 aa13.58□□□□□ -0.24
CDH3-210ENST00000569117 LY75O60449 1722 aa13.58□□□□□ -0.24
CDH3-210ENST00000569117 FAM182BQ5T319 152 aa13.57□□□□□ -0.24
CDH3-210ENST00000569117 FAM196AQ6ZSG2 479 aa13.57□□□□□ -0.24
CDH3-210ENST00000569117 TRMT2AQ8IZ69 625 aaKnown RBP13.57□□□□□ -0.24
CDH3-210ENST00000569117 NFATC2IPQ8NCF5 419 aa13.57□□□□□ -0.24
CDH3-210ENST00000569117 MBIPQ9NS73 344 aa13.57□□□□□ -0.24
CDH3-210ENST00000569117 TJP1Q07157 1748 aa13.56□□□□□ -0.24
CDH3-210ENST00000569117 BTBD11A6QL63 1104 aa13.56□□□□□ -0.24
CDH3-210ENST00000569117 PRIM1P49642 420 aaKnown RBP13.56□□□□□ -0.24
CDH3-210ENST00000569117 DUSP27Q5VZP5 1158 aa13.56□□□□□ -0.24
CDH3-210ENST00000569117 TSR2Q969E8 191 aaKnown RBP13.56□□□□□ -0.24
CDH3-210ENST00000569117 TSPYL4Q9UJ04 414 aa13.56□□□□□ -0.24
CDH3-210ENST00000569117 PIGBQ92521 554 aa13.55□□□□□ -0.24
CDH3-210ENST00000569117 ACSBG1Q96GR2 724 aa13.55□□□□□ -0.24
CDH3-210ENST00000569117 LAS1LQ9Y4W2 734 aaKnown RBP13.55□□□□□ -0.24
CDH3-210ENST00000569117 COL5A3P25940 1745 aaPredicted RBP13.54□□□□□ -0.24
CDH3-210ENST00000569117 ZNF790Q6PG37 636 aa13.54□□□□□ -0.24
CDH3-210ENST00000569117 RASEFQ8IZ41 740 aa13.54□□□□□ -0.24
CDH3-210ENST00000569117 SYTL4Q96C24 671 aaPredicted RBP13.54□□□□□ -0.24
CDH3-210ENST00000569117 HEG1Q9ULI3 1381 aa13.54□□□□□ -0.24
CDH3-210ENST00000569117 KCNQ2O43526 872 aa13.53□□□□□ -0.24
CDH3-210ENST00000569117 MIS18AQ9NYP9 233 aa13.53□□□□□ -0.24
CDH3-210ENST00000569117 PRR29P0C7W0 189 aa13.52□□□□□ -0.25
CDH3-210ENST00000569117 TTC5Q8N0Z6 440 aa13.52□□□□□ -0.25
CDH3-210ENST00000569117 PALLDQ8WX93 1383 aa13.52□□□□□ -0.25
CDH3-210ENST00000569117 TAF1LQ8IZX4 1826 aa13.51□□□□□ -0.25
CDH3-210ENST00000569117 RREB1Q92766 1687 aa13.51□□□□□ -0.25
CDH3-210ENST00000569117 SOS1Q07889 1333 aaPredicted RBP13.51□□□□□ -0.25
CDH3-210ENST00000569117 EIF4A1P60842 406 aaKnown RBP13.51□□□□□ -0.25
CDH3-210ENST00000569117 SLC39A6Q13433 755 aa13.51□□□□□ -0.25
CDH3-210ENST00000569117 ATG3Q9NT62 314 aa13.51□□□□□ -0.25
CDH3-210ENST00000569117 ASAP1Q9ULH1 1129 aa13.51□□□□□ -0.25
CDH3-210ENST00000569117 KCNQ3O43525 872 aa13.5□□□□□ -0.25
CDH3-210ENST00000569117 HOXB7P09629 217 aa13.5□□□□□ -0.25
CDH3-210ENST00000569117 PYGBP11216 843 aa13.5□□□□□ -0.25
CDH3-210ENST00000569117 PTF1AQ7RTS3 328 aa13.5□□□□□ -0.25
CDH3-210ENST00000569117 SMARCC1Q92922 1105 aaPredicted RBP13.5□□□□□ -0.25
CDH3-210ENST00000569117 FMNL2Q96PY5 1086 aa13.5□□□□□ -0.25
CDH3-210ENST00000569117 CLEC11AQ9Y240 323 aa13.5□□□□□ -0.25
CDH3-210ENST00000569117 CACNA1FO60840 1977 aa13.49□□□□□ -0.25
CDH3-210ENST00000569117 CT47B1P0C2W7 299 aaPredicted RBP13.49□□□□□ -0.25
CDH3-210ENST00000569117 EXOSC9Q06265 439 aaKnown RBP13.49□□□□□ -0.25
CDH3-210ENST00000569117 ZNF496Q96IT1 587 aaPredicted RBP13.49□□□□□ -0.25
CDH3-210ENST00000569117 TRIM37O94972 964 aa13.48□□□□□ -0.25
CDH3-210ENST00000569117 KRT24Q2M2I5 525 aa13.48□□□□□ -0.25
CDH3-210ENST00000569117 GIGYF1O75420 1035 aaPredicted RBP13.47□□□□□ -0.25
CDH3-210ENST00000569117 TWISTNBQ3B726 338 aaPredicted RBP13.47□□□□□ -0.25
CDH3-210ENST00000569117 TSPYL6Q8N831 410 aa13.47□□□□□ -0.25
CDH3-210ENST00000569117 C8orf58Q8NAV2 365 aa13.47□□□□□ -0.25
CDH3-210ENST00000569117 PTCD1O75127 700 aaKnown RBP13.46□□□□□ -0.25
CDH3-210ENST00000569117 SNRPA1P09661 255 aaKnown RBP13.46□□□□□ -0.25
CDH3-210ENST00000569117 ZNF428Q96B54 188 aa13.46□□□□□ -0.25
CDH3-210ENST00000569117 WDR70Q9NW82 654 aa13.46□□□□□ -0.25
CDH3-210ENST00000569117 C4BP0C0L5 1744 aa13.45□□□□□ -0.26
CDH3-210ENST00000569117 LOC102724428A0A0B4J2F2 783 aa13.45□□□□□ -0.26
CDH3-210ENST00000569117 SIK1P57059 783 aa13.45□□□□□ -0.26
CDH3-210ENST00000569117 SLC4A9Q96Q91 983 aa13.45□□□□□ -0.26
CDH3-210ENST00000569117 ARXQ96QS3 562 aa13.45□□□□□ -0.26
CDH3-210ENST00000569117 RBM42Q9BTD8 480 aaKnown RBP13.45□□□□□ -0.26
CDH3-210ENST00000569117 NUP188Q5SRE5 1749 aa13.44□□□□□ -0.26
CDH3-210ENST00000569117 VAMP4O75379 141 aa13.44□□□□□ -0.26
CDH3-210ENST00000569117 CENPBP07199 599 aaPredicted RBP13.44□□□□□ -0.26
CDH3-210ENST00000569117 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.44□□□□□ -0.26
CDH3-210ENST00000569117 AKT1S1Q96B36 256 aa13.44□□□□□ -0.26
CDH3-210ENST00000569117 PRAMEF22A3QJZ6 481 aa13.43□□□□□ -0.26
CDH3-210ENST00000569117 ELL2O00472 640 aaPredicted RBP13.43□□□□□ -0.26
CDH3-210ENST00000569117 PLSCR1O15162 318 aa13.43□□□□□ -0.26
CDH3-210ENST00000569117 HDGFL1Q5TGJ6 251 aa13.43□□□□□ -0.26
CDH3-210ENST00000569117 KCNV2Q8TDN2 545 aa13.43□□□□□ -0.26
CDH3-210ENST00000569117 TEX13AQ9BXU3 409 aaPredicted RBP13.43□□□□□ -0.26
CDH3-210ENST00000569117 CHMP4AQ9BY43 222 aa13.43□□□□□ -0.26
CDH3-210ENST00000569117 MYH14Q7Z406 1995 aaKnown RBP13.43□□□□□ -0.26
CDH3-210ENST00000569117 ERBB4Q15303 1308 aa13.42□□□□□ -0.26
CDH3-210ENST00000569117 N4BP2Q86UW6 1770 aaPredicted RBP13.42□□□□□ -0.26
CDH3-210ENST00000569117 APBA3O96018 575 aa13.41□□□□□ -0.26
CDH3-210ENST00000569117 ATP6V1AP38606 617 aa13.41□□□□□ -0.26
CDH3-210ENST00000569117 RARSP54136 660 aaKnown RBP13.41□□□□□ -0.26
CDH3-210ENST00000569117 ITPK1Q13572 414 aa13.41□□□□□ -0.26
CDH3-210ENST00000569117 ALDH1L2Q3SY69 923 aa13.41□□□□□ -0.26
CDH3-210ENST00000569117 SLC27A3Q5K4L6 730 aa13.41□□□□□ -0.26
CDH3-210ENST00000569117 DNAJC10Q8IXB1 793 aa13.41□□□□□ -0.26
CDH3-210ENST00000569117 CCNL1Q9UK58 526 aaPredicted RBP13.41□□□□□ -0.26
CDH3-210ENST00000569117 RCAN3Q9UKA8 241 aa13.41□□□□□ -0.26
CDH3-210ENST00000569117 UBR3Q6ZT12 1888 aa13.41□□□□□ -0.26
CDH3-210ENST00000569117 TUBGCP6Q96RT7 1819 aa13.41□□□□□ -0.26
CDH3-210ENST00000569117 C4AP0C0L4 1744 aa13.4□□□□□ -0.26
CDH3-210ENST00000569117 QSER1Q2KHR3 1735 aa13.4□□□□□ -0.26
CDH3-210ENST00000569117 CYP19A1P11511 503 aaPredicted RBP13.4□□□□□ -0.26
CDH3-210ENST00000569117 CCDC30Q5VVM6 783 aa13.4□□□□□ -0.26
CDH3-210ENST00000569117 CCDC125Q86Z20 511 aa13.4□□□□□ -0.26
CDH3-210ENST00000569117 USP16Q9Y5T5 823 aa13.4□□□□□ -0.26
CDH3-210ENST00000569117 BCORQ6W2J9 1755 aa13.4□□□□□ -0.26
CDH3-210ENST00000569117 CNTNAP4Q9C0A0 1308 aa13.39□□□□□ -0.27
CDH3-210ENST00000569117 STARD3NLO95772 234 aa13.39□□□□□ -0.27
CDH3-210ENST00000569117 SF3B2Q13435 895 aaKnown RBP13.39□□□□□ -0.27
CDH3-210ENST00000569117 TXNRD1Q16881 649 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms