RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 FUT2Q10981 343 aa4.31□□□□□ -1.72
VPS35-209ENST00000568642 MEX3CQ5U5Q3 659 aaKnown RBP4.31□□□□□ -1.72
VPS35-209ENST00000568642 BRICD5Q6PL45 260 aa4.31□□□□□ -1.72
VPS35-209ENST00000568642 PPME1Q9Y570 386 aa4.31□□□□□ -1.72
VPS35-209ENST00000568642 ZNF142P52746 1687 aaPredicted RBP4.31□□□□□ -1.72
VPS35-209ENST00000568642 PHLPP1O60346 1717 aa4.3□□□□□ -1.72
VPS35-209ENST00000568642 PLEKHD1A6NEE1 506 aa4.3□□□□□ -1.72
VPS35-209ENST00000568642 BTBD11A6QL63 1104 aa4.3□□□□□ -1.72
VPS35-209ENST00000568642 RAB11FIP3O75154 756 aa4.3□□□□□ -1.72
VPS35-209ENST00000568642 CLCN1P35523 988 aa4.3□□□□□ -1.72
VPS35-209ENST00000568642 CDCA8Q53HL2 280 aa4.3□□□□□ -1.72
VPS35-209ENST00000568642 KANK4Q5T7N3 995 aaPredicted RBP4.3□□□□□ -1.72
VPS35-209ENST00000568642 MRPL14Q6P1L8 145 aaKnown RBP4.3□□□□□ -1.72
VPS35-209ENST00000568642 GIPC2Q8TF65 315 aa4.3□□□□□ -1.72
VPS35-209ENST00000568642 PSMD1Q99460 953 aa4.3□□□□□ -1.72
VPS35-209ENST00000568642 BCL2L13Q9BXK5 485 aa4.3□□□□□ -1.72
VPS35-209ENST00000568642 KDM5CP41229 1560 aa4.3□□□□□ -1.72
VPS35-209ENST00000568642 UTRNP46939 3433 aa4.3□□□□□ -1.72
VPS35-209ENST00000568642 PHLDB1Q86UU1 1377 aa4.29□□□□□ -1.72
VPS35-209ENST00000568642 ROBO1Q9Y6N7 1651 aa4.29□□□□□ -1.72
VPS35-209ENST00000568642 SYNMO15061 1565 aa4.29□□□□□ -1.72
VPS35-209ENST00000568642 SOWAHDA6NJG2 315 aa4.29□□□□□ -1.72
VPS35-209ENST00000568642 K7ELQ4 463 aaPredicted RBP4.29□□□□□ -1.72
VPS35-209ENST00000568642 WNT7BP56706 349 aa4.29□□□□□ -1.72
VPS35-209ENST00000568642 ECM1Q16610 540 aa4.29□□□□□ -1.72
VPS35-209ENST00000568642 EGFLAMQ63HQ2 1017 aa4.29□□□□□ -1.72
VPS35-209ENST00000568642 NLGN1Q8N2Q7 840 aa4.29□□□□□ -1.72
VPS35-209ENST00000568642 MICAL1Q8TDZ2 1067 aa4.29□□□□□ -1.72
VPS35-209ENST00000568642 TRIM34Q9BYJ4 488 aa4.29□□□□□ -1.72
VPS35-209ENST00000568642 TFIP11Q9UBB9 837 aaKnown RBP4.29□□□□□ -1.72
VPS35-209ENST00000568642 MAFBQ9Y5Q3 323 aaPredicted RBP4.29□□□□□ -1.72
VPS35-209ENST00000568642 WASF2Q9Y6W5 498 aa4.29□□□□□ -1.72
VPS35-209ENST00000568642 PLA2R1Q13018 1463 aa4.29□□□□□ -1.72
VPS35-209ENST00000568642 TCOF1Q13428 1488 aaKnown RBP4.29□□□□□ -1.72
VPS35-209ENST00000568642 STRCP1A6NGW2 1772 aa4.28□□□□□ -1.72
VPS35-209ENST00000568642 EFCAB5A4FU69 1503 aa4.28□□□□□ -1.72
VPS35-209ENST00000568642 ZFYVE16Q7Z3T8 1539 aa4.28□□□□□ -1.72
VPS35-209ENST00000568642 SSFA2P28290 1259 aa4.28□□□□□ -1.72
VPS35-209ENST00000568642 LMOD1P29536 600 aaPredicted RBP4.28□□□□□ -1.72
VPS35-209ENST00000568642 MMP16P51512 607 aa4.28□□□□□ -1.72
VPS35-209ENST00000568642 MARSP56192 900 aaKnown RBP4.28□□□□□ -1.72
VPS35-209ENST00000568642 PSME1Q06323 249 aa4.28□□□□□ -1.72
VPS35-209ENST00000568642 TUSC1Q2TAM9 212 aa4.28□□□□□ -1.72
VPS35-209ENST00000568642 RNFT1Q5M7Z0 435 aa4.28□□□□□ -1.72
VPS35-209ENST00000568642 TMEM164Q5U3C3 297 aa4.28□□□□□ -1.72
VPS35-209ENST00000568642 PRR7Q8TB68 274 aa4.28□□□□□ -1.72
VPS35-209ENST00000568642 STK32AQ8WU08 396 aa4.28□□□□□ -1.72
VPS35-209ENST00000568642 NLRP7Q8WX94 980 aa4.28□□□□□ -1.72
VPS35-209ENST00000568642 EVI5LQ96CN4 794 aa4.28□□□□□ -1.72
VPS35-209ENST00000568642 COL25A1Q9BXS0 654 aaPredicted RBP4.28□□□□□ -1.72
VPS35-209ENST00000568642 LNPKQ9C0E8 428 aa4.28□□□□□ -1.72
VPS35-209ENST00000568642 TBX22Q9Y458 520 aa4.28□□□□□ -1.72
VPS35-209ENST00000568642 SALL2Q9Y467 1007 aaPredicted RBP4.28□□□□□ -1.72
VPS35-209ENST00000568642 UACAQ9BZF9 1416 aa4.28□□□□□ -1.72
VPS35-209ENST00000568642 TRAPPC8Q9Y2L5 1435 aa4.28□□□□□ -1.72
VPS35-209ENST00000568642 LRP6O75581 1613 aa4.28□□□□□ -1.72
VPS35-209ENST00000568642 NWD1Q149M9 1564 aa4.27□□□□□ -1.73
VPS35-209ENST00000568642 TOP2AP11388 1531 aaKnown RBP4.27□□□□□ -1.73
VPS35-209ENST00000568642 CDK13Q14004 1512 aaKnown RBP4.27□□□□□ -1.73
VPS35-209ENST00000568642 ABCA10Q8WWZ4 1543 aa4.27□□□□□ -1.73
VPS35-209ENST00000568642 BCL9LQ86UU0 1499 aa4.27□□□□□ -1.73
VPS35-209ENST00000568642 CLSTN1O94985 981 aa4.27□□□□□ -1.73
VPS35-209ENST00000568642 NCLP19338 710 aaKnown RBP4.27□□□□□ -1.73
VPS35-209ENST00000568642 ATP6V1AP38606 617 aa4.27□□□□□ -1.73
VPS35-209ENST00000568642 ELOAQ14241 798 aaKnown RBP4.27□□□□□ -1.73
VPS35-209ENST00000568642 QPCTQ16769 361 aa4.27□□□□□ -1.73
VPS35-209ENST00000568642 NOL8Q76FK4 1167 aaKnown RBP4.27□□□□□ -1.73
VPS35-209ENST00000568642 KRTAP19-1Q8IUB9 90 aa4.27□□□□□ -1.73
VPS35-209ENST00000568642 VTI1AQ96AJ9 217 aa4.27□□□□□ -1.73
VPS35-209ENST00000568642 PDE4DIPQ5VU43 2346 aa4.27□□□□□ -1.73
VPS35-209ENST00000568642 ABCA8O94911 1581 aa4.27□□□□□ -1.73
VPS35-209ENST00000568642 VWDEQ8N2E2 1590 aa4.27□□□□□ -1.73
VPS35-209ENST00000568642 XIRP1Q702N8 1843 aaKnown RBP4.26□□□□□ -1.73
VPS35-209ENST00000568642 RAPGEF2Q9Y4G8 1499 aa4.26□□□□□ -1.73
VPS35-209ENST00000568642 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP4.26□□□□□ -1.73
VPS35-209ENST00000568642 ANKRD33BA6NCL7 494 aa4.26□□□□□ -1.73
VPS35-209ENST00000568642 LILRB3O75022 631 aa4.26□□□□□ -1.73
VPS35-209ENST00000568642 SCNN1AP37088 669 aa4.26□□□□□ -1.73
VPS35-209ENST00000568642 HDLBPQ00341 1268 aaKnown RBP4.26□□□□□ -1.73
VPS35-209ENST00000568642 SCARF1Q14162 830 aa4.26□□□□□ -1.73
VPS35-209ENST00000568642 RTL5Q5HYW3 569 aaPredicted RBP4.26□□□□□ -1.73
VPS35-209ENST00000568642 TBC1D9Q6ZT07 1266 aa4.26□□□□□ -1.73
VPS35-209ENST00000568642 METTL16Q86W50 562 aaKnown RBP4.26□□□□□ -1.73
VPS35-209ENST00000568642 GALNT6Q8NCL4 622 aa4.26□□□□□ -1.73
VPS35-209ENST00000568642 SCARF2Q96GP6 870 aaPredicted RBP4.26□□□□□ -1.73
VPS35-209ENST00000568642 DCAF5Q96JK2 942 aa4.26□□□□□ -1.73
VPS35-209ENST00000568642 PIF1Q9H611 641 aa4.26□□□□□ -1.73
VPS35-209ENST00000568642 JCADQ9P266 1359 aa4.26□□□□□ -1.73
VPS35-209ENST00000568642 NEO1Q92859 1461 aa4.25□□□□□ -1.73
VPS35-209ENST00000568642 MYO3AQ8NEV4 1616 aa4.25□□□□□ -1.73
VPS35-209ENST00000568642 TLDC2A0PJX2 215 aa4.25□□□□□ -1.73
VPS35-209ENST00000568642 SPTLC1O15269 473 aa4.25□□□□□ -1.73
VPS35-209ENST00000568642 MAN1A2O60476 641 aa4.25□□□□□ -1.73
VPS35-209ENST00000568642 PARNO95453 639 aaKnown RBP4.25□□□□□ -1.73
VPS35-209ENST00000568642 SERPINB4P48594 390 aa4.25□□□□□ -1.73
VPS35-209ENST00000568642 MRPL58Q14197 206 aaKnown RBP4.25□□□□□ -1.73
VPS35-209ENST00000568642 TNS2Q63HR2 1409 aa4.25□□□□□ -1.73
VPS35-209ENST00000568642 CCDC24Q8N4L8 307 aa4.25□□□□□ -1.73
VPS35-209ENST00000568642 EHBP1Q8NDI1 1231 aa4.25□□□□□ -1.73
VPS35-209ENST00000568642 PIK3R5Q8WYR1 880 aa4.25□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms