RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 LMNB1P20700 586 aa18.69■□□□□ 0.58
CLN3-235ENST00000568497 FAM161AQ3B820 660 aa18.69■□□□□ 0.58
CLN3-235ENST00000568497 IFNL2Q8IZJ0 200 aa18.69■□□□□ 0.58
CLN3-235ENST00000568497 COL5A3P25940 1745 aaPredicted RBP18.69■□□□□ 0.58
CLN3-235ENST00000568497 U2SURPO15042 1029 aaKnown RBP18.68■□□□□ 0.58
CLN3-235ENST00000568497 AIDAQ96BJ3 306 aa18.68■□□□□ 0.58
CLN3-235ENST00000568497 SLC4A9Q96Q91 983 aa18.68■□□□□ 0.58
CLN3-235ENST00000568497 SRP68Q9UHB9 627 aaKnown RBP18.68■□□□□ 0.58
CLN3-235ENST00000568497 DIAPH1O60610 1272 aaKnown RBP18.67■□□□□ 0.58
CLN3-235ENST00000568497 DDR1Q08345 913 aa18.67■□□□□ 0.58
CLN3-235ENST00000568497 PRDM10Q9NQV6 1147 aa18.67■□□□□ 0.58
CLN3-235ENST00000568497 CREBZFQ9NS37 354 aa18.67■□□□□ 0.58
CLN3-235ENST00000568497 FKBP8Q14318 412 aa18.66■□□□□ 0.58
CLN3-235ENST00000568497 KDM6AO15550 1401 aaPredicted RBP18.66■□□□□ 0.58
CLN3-235ENST00000568497 CTCFP49711 727 aaPredicted RBP18.65■□□□□ 0.58
CLN3-235ENST00000568497 PCDH10Q9P2E7 1040 aa18.64■□□□□ 0.57
CLN3-235ENST00000568497 CCDC88AQ3V6T2 1871 aa18.64■□□□□ 0.57
CLN3-235ENST00000568497 MYH14Q7Z406 1995 aaKnown RBP18.64■□□□□ 0.57
CLN3-235ENST00000568497 ERVV-2B6SEH9 535 aa18.63■□□□□ 0.57
CLN3-235ENST00000568497 DPY19L2Q6NUT2 758 aa18.63■□□□□ 0.57
CLN3-235ENST00000568497 USP42Q9H9J4 1324 aaKnown RBP18.63■□□□□ 0.57
CLN3-235ENST00000568497 CNTNAP1P78357 1384 aa18.61■□□□□ 0.57
CLN3-235ENST00000568497 POLRMTO00411 1230 aaKnown RBP18.61■□□□□ 0.57
CLN3-235ENST00000568497 CHADLQ6NUI6 762 aa18.61■□□□□ 0.57
CLN3-235ENST00000568497 POTECB2RU33 542 aa18.6■□□□□ 0.57
CLN3-235ENST00000568497 PTCD1O75127 700 aaKnown RBP18.6■□□□□ 0.57
CLN3-235ENST00000568497 CRKLP46109 303 aaKnown RBP18.6■□□□□ 0.57
CLN3-235ENST00000568497 ZNF530Q6P9A1 599 aaPredicted RBP18.6■□□□□ 0.57
CLN3-235ENST00000568497 ABHD8Q96I13 439 aa18.6■□□□□ 0.57
CLN3-235ENST00000568497 LBX1P52954 281 aa18.59■□□□□ 0.57
CLN3-235ENST00000568497 TM4SF1P30408 202 aa18.58■□□□□ 0.56
CLN3-235ENST00000568497 TTLL6Q8N841 843 aa18.58■□□□□ 0.56
CLN3-235ENST00000568497 ZPR1O75312 459 aa18.57■□□□□ 0.56
CLN3-235ENST00000568497 HSP90AB1P08238 724 aaKnown RBP18.57■□□□□ 0.56
CLN3-235ENST00000568497 U2AF1L5P0DN76 240 aaPredicted RBP18.57■□□□□ 0.56
CLN3-235ENST00000568497 CABP4P57796 275 aa18.57■□□□□ 0.56
CLN3-235ENST00000568497 U2AF1Q01081 240 aaKnown RBP eCLIP18.57■□□□□ 0.56
CLN3-235ENST00000568497 CCDC184Q52MB2 194 aa18.57■□□□□ 0.56
CLN3-235ENST00000568497 PLEKHO1Q53GL0 409 aaPredicted RBP18.57■□□□□ 0.56
CLN3-235ENST00000568497 PHACTR3Q96KR7 559 aa18.57■□□□□ 0.56
CLN3-235ENST00000568497 CFAP53Q96M91 514 aa18.57■□□□□ 0.56
CLN3-235ENST00000568497 NFKBIEO00221 500 aa18.56■□□□□ 0.56
CLN3-235ENST00000568497 POTEIP0CG38 1075 aa18.56■□□□□ 0.56
CLN3-235ENST00000568497 POTEJP0CG39 1038 aa18.56■□□□□ 0.56
CLN3-235ENST00000568497 MLLT1Q03111 559 aaPredicted RBP18.56■□□□□ 0.56
CLN3-235ENST00000568497 MTHFSDQ2M296 383 aaKnown RBP18.56■□□□□ 0.56
CLN3-235ENST00000568497 DLEC1Q9Y238 1755 aa18.55■□□□□ 0.56
CLN3-235ENST00000568497 PRKAR2BP31323 418 aa18.55■□□□□ 0.56
CLN3-235ENST00000568497 VEGFBP49765 207 aa18.55■□□□□ 0.56
CLN3-235ENST00000568497 ERFEQ4G0M1 354 aa18.55■□□□□ 0.56
CLN3-235ENST00000568497 PRKRIP1Q9H875 184 aaPredicted RBP18.55■□□□□ 0.56
CLN3-235ENST00000568497 AFDNP55196 1824 aaKnown RBP18.54■□□□□ 0.56
CLN3-235ENST00000568497 RALBP1Q15311 655 aa18.54■□□□□ 0.56
CLN3-235ENST00000568497 USPL1Q5W0Q7 1092 aa18.54■□□□□ 0.56
CLN3-235ENST00000568497 C2CD5Q86YS7 1000 aa18.54■□□□□ 0.56
CLN3-235ENST00000568497 RSPH6AQ9H0K4 717 aa18.54■□□□□ 0.56
CLN3-235ENST00000568497 LGR6Q9HBX8 967 aa18.54■□□□□ 0.56
CLN3-235ENST00000568497 ZNF219Q9P2Y4 722 aaPredicted RBP18.54■□□□□ 0.56
CLN3-235ENST00000568497 CCDC85CA6NKD9 419 aa18.53■□□□□ 0.56
CLN3-235ENST00000568497 H0YIN7 160 aa18.52■□□□□ 0.56
CLN3-235ENST00000568497 WBP1LQ9NX94 342 aa18.52■□□□□ 0.56
CLN3-235ENST00000568497 TJP1Q07157 1748 aa18.52■□□□□ 0.55
CLN3-235ENST00000568497 MYBBP1AQ9BQG0 1328 aaKnown RBP18.51■□□□□ 0.55
CLN3-235ENST00000568497 ADAMTS7Q9UKP4 1686 aa18.51■□□□□ 0.55
CLN3-235ENST00000568497 NFIXQ14938 502 aa18.51■□□□□ 0.55
CLN3-235ENST00000568497 TMEM88BA6NKF7 163 aa18.5■□□□□ 0.55
CLN3-235ENST00000568497 DDNO94850 711 aaPredicted RBP18.5■□□□□ 0.55
CLN3-235ENST00000568497 HSPA8P11142 646 aaKnown RBP18.5■□□□□ 0.55
CLN3-235ENST00000568497 C1orf141Q5JVX7 400 aa18.5■□□□□ 0.55
CLN3-235ENST00000568497 INTS5Q6P9B9 1019 aaKnown RBP18.5■□□□□ 0.55
CLN3-235ENST00000568497 DICER1Q9UPY3 1922 aaKnown RBP18.5■□□□□ 0.55
CLN3-235ENST00000568497 NRXN2Q9P2S2 1712 aa18.49■□□□□ 0.55
CLN3-235ENST00000568497 VIRMAQ69YN4 1812 aaKnown RBP18.49■□□□□ 0.55
CLN3-235ENST00000568497 SERPINB2P05120 415 aa18.49■□□□□ 0.55
CLN3-235ENST00000568497 CCDC146Q8IYE0 955 aa18.49■□□□□ 0.55
CLN3-235ENST00000568497 NUDCQ9Y266 331 aa18.49■□□□□ 0.55
CLN3-235ENST00000568497 PASKQ96RG2 1323 aa18.49■□□□□ 0.55
CLN3-235ENST00000568497 C21orf2O43822 256 aa18.48■□□□□ 0.55
CLN3-235ENST00000568497 AMOTQ4VCS5 1084 aa18.48■□□□□ 0.55
CLN3-235ENST00000568497 LDHDQ86WU2 507 aa18.48■□□□□ 0.55
CLN3-235ENST00000568497 ZNF622Q969S3 477 aaKnown RBP eCLIP18.48■□□□□ 0.55
CLN3-235ENST00000568497 CFAP44Q96MT7 982 aa18.48■□□□□ 0.55
CLN3-235ENST00000568497 CARMIL3Q8ND23 1372 aa18.47■□□□□ 0.55
CLN3-235ENST00000568497 IQCA1LA6NCM1 817 aa18.47■□□□□ 0.55
CLN3-235ENST00000568497 DCTN1Q14203 1278 aa18.47■□□□□ 0.55
CLN3-235ENST00000568497 EAPPQ56P03 285 aaPredicted RBP18.46■□□□□ 0.55
CLN3-235ENST00000568497 NFATC2IPQ8NCF5 419 aa18.46■□□□□ 0.55
CLN3-235ENST00000568497 TAOK3Q9H2K8 898 aa18.46■□□□□ 0.55
CLN3-235ENST00000568497 SOS1Q07889 1333 aaPredicted RBP18.46■□□□□ 0.55
CLN3-235ENST00000568497 COL15A1P39059 1388 aa18.45■□□□□ 0.54
CLN3-235ENST00000568497 RNMTO43148 476 aaKnown RBP18.45■□□□□ 0.54
CLN3-235ENST00000568497 MAP2K1Q02750 393 aaPredicted RBP18.45■□□□□ 0.54
CLN3-235ENST00000568497 SLC39A6Q13433 755 aa18.45■□□□□ 0.54
CLN3-235ENST00000568497 BICDL1Q6ZP65 573 aa18.45■□□□□ 0.54
CLN3-235ENST00000568497 DNAJC10Q8IXB1 793 aa18.45■□□□□ 0.54
CLN3-235ENST00000568497 NARFQ9UHQ1 456 aa18.45■□□□□ 0.54
CLN3-235ENST00000568497 CLEC11AQ9Y240 323 aa18.45■□□□□ 0.54
CLN3-235ENST00000568497 FER1L6Q2WGJ9 1857 aa18.45■□□□□ 0.54
CLN3-235ENST00000568497 AKAP4Q5JQC9 854 aa18.44■□□□□ 0.54
CLN3-235ENST00000568497 RRP7AQ9Y3A4 280 aaKnown RBP18.44■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms