RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 PHF20L1A8MW92 1017 aa6.19□□□□□ -1.42
VPS35-207ENST00000568191 BMP4P12644 408 aa6.19□□□□□ -1.42
VPS35-207ENST00000568191 KCNMA1Q12791 1236 aa6.19□□□□□ -1.42
VPS35-207ENST00000568191 LARP1Q6PKG0 1096 aaKnown RBP6.19□□□□□ -1.42
VPS35-207ENST00000568191 LYPD4Q6UWN0 246 aa6.19□□□□□ -1.42
VPS35-207ENST00000568191 TMEM151AQ8N4L1 468 aa6.19□□□□□ -1.42
VPS35-207ENST00000568191 OGFOD1Q8N543 542 aa6.19□□□□□ -1.42
VPS35-207ENST00000568191 SERBP1Q8NC51 408 aaKnown RBP eCLIP6.19□□□□□ -1.42
VPS35-207ENST00000568191 WHAMMQ8TF30 809 aa6.19□□□□□ -1.42
VPS35-207ENST00000568191 OXCT2Q9BYC2 517 aaPredicted RBP6.19□□□□□ -1.42
VPS35-207ENST00000568191 ZNF358Q9NW07 568 aa6.19□□□□□ -1.42
VPS35-207ENST00000568191 SCHIP1Q9P0W5 487 aaPredicted RBP6.19□□□□□ -1.42
VPS35-207ENST00000568191 ZNF232Q9UNY5 417 aa6.19□□□□□ -1.42
VPS35-207ENST00000568191 ATXN7O15265 892 aaPredicted RBP6.18□□□□□ -1.42
VPS35-207ENST00000568191 ARHGEF15O94989 841 aa6.18□□□□□ -1.42
VPS35-207ENST00000568191 KANK3Q6NY19 840 aa6.18□□□□□ -1.42
VPS35-207ENST00000568191 FNBP4Q8N3X1 1017 aaPredicted RBP6.18□□□□□ -1.42
VPS35-207ENST00000568191 BEND7Q8N7W2 519 aaPredicted RBP6.18□□□□□ -1.42
VPS35-207ENST00000568191 A0A1W2PNR3 127 aa6.17□□□□□ -1.42
VPS35-207ENST00000568191 SERTM1A2A2V5 107 aa6.17□□□□□ -1.42
VPS35-207ENST00000568191 M0R2N6 131 aa6.17□□□□□ -1.42
VPS35-207ENST00000568191 RASA1P20936 1047 aa6.17□□□□□ -1.42
VPS35-207ENST00000568191 FGFR3P22607 806 aa6.17□□□□□ -1.42
VPS35-207ENST00000568191 TEAD4Q15561 434 aa6.17□□□□□ -1.42
VPS35-207ENST00000568191 GOLGA6L1Q8N7Z2 621 aa6.17□□□□□ -1.42
VPS35-207ENST00000568191 ADAMTS19Q8TE59 1207 aa6.17□□□□□ -1.42
VPS35-207ENST00000568191 L3MBTL2Q969R5 705 aa6.17□□□□□ -1.42
VPS35-207ENST00000568191 ZCCHC2Q9C0B9 1178 aaKnown RBP6.17□□□□□ -1.42
VPS35-207ENST00000568191 TFIP11Q9UBB9 837 aaKnown RBP6.17□□□□□ -1.42
VPS35-207ENST00000568191 IQSEC3Q9UPP2 1182 aaPredicted RBP6.17□□□□□ -1.42
VPS35-207ENST00000568191 GPC6Q9Y625 555 aaPredicted RBP6.17□□□□□ -1.42
VPS35-207ENST00000568191 LOC100996750A0A140TA64 210 aa6.16□□□□□ -1.42
VPS35-207ENST00000568191 PIK3R2O00459 728 aa6.16□□□□□ -1.42
VPS35-207ENST00000568191 GDF11O95390 407 aa6.16□□□□□ -1.42
VPS35-207ENST00000568191 NOS2P35228 1153 aa6.16□□□□□ -1.42
VPS35-207ENST00000568191 PSMA6P60900 246 aaKnown RBP6.16□□□□□ -1.42
VPS35-207ENST00000568191 SLC9A9Q8IVB4 645 aa6.16□□□□□ -1.42
VPS35-207ENST00000568191 TNS4Q8IZW8 715 aa6.16□□□□□ -1.42
VPS35-207ENST00000568191 ABHD17AQ96GS6 310 aa6.16□□□□□ -1.42
VPS35-207ENST00000568191 UCN2Q96RP3 112 aa6.16□□□□□ -1.42
VPS35-207ENST00000568191 KRTAP4-6Q9BYQ5 205 aa6.16□□□□□ -1.42
VPS35-207ENST00000568191 OIP5O43482 229 aa6.15□□□□□ -1.42
VPS35-207ENST00000568191 BNIP3LO60238 219 aa6.15□□□□□ -1.42
VPS35-207ENST00000568191 ATP4AP20648 1035 aa6.15□□□□□ -1.42
VPS35-207ENST00000568191 SEC13P55735 322 aa6.15□□□□□ -1.42
VPS35-207ENST00000568191 RASSF7Q02833 373 aa6.15□□□□□ -1.42
VPS35-207ENST00000568191 GAS2L2Q8NHY3 880 aa6.15□□□□□ -1.42
VPS35-207ENST00000568191 ACDQ96AP0 544 aa6.15□□□□□ -1.42
VPS35-207ENST00000568191 KLRG1Q96E93 195 aa6.15□□□□□ -1.42
VPS35-207ENST00000568191 ZNF594Q96JF6 807 aaPredicted RBP6.15□□□□□ -1.42
VPS35-207ENST00000568191 ANKIB1Q9P2G1 1089 aa6.15□□□□□ -1.42
VPS35-207ENST00000568191 PRR12Q9ULL5 1215 aa6.15□□□□□ -1.42
VPS35-207ENST00000568191 PARP3Q9Y6F1 533 aa6.15□□□□□ -1.42
VPS35-207ENST00000568191 KHNYNO15037 678 aaKnown RBP6.14□□□□□ -1.43
VPS35-207ENST00000568191 ZBTB7BO15156 539 aaPredicted RBP6.14□□□□□ -1.43
VPS35-207ENST00000568191 AMPD1P23109 780 aa6.14□□□□□ -1.43
VPS35-207ENST00000568191 IRS1P35568 1242 aa6.14□□□□□ -1.43
VPS35-207ENST00000568191 CLDN10P78369 228 aa6.14□□□□□ -1.43
VPS35-207ENST00000568191 LAMC2Q13753 1193 aa6.14□□□□□ -1.43
VPS35-207ENST00000568191 HIF1AQ16665 826 aa6.14□□□□□ -1.43
VPS35-207ENST00000568191 SIX5Q8N196 739 aa6.14□□□□□ -1.43
VPS35-207ENST00000568191 GALNT6Q8NCL4 622 aa6.14□□□□□ -1.43
VPS35-207ENST00000568191 ZIC5Q96T25 663 aa6.14□□□□□ -1.43
VPS35-207ENST00000568191 PPP1R12CQ9BZL4 782 aa6.14□□□□□ -1.43
VPS35-207ENST00000568191 VRTNQ9H8Y1 702 aa6.14□□□□□ -1.43
VPS35-207ENST00000568191 MAFBQ9Y5Q3 323 aaPredicted RBP6.14□□□□□ -1.43
VPS35-207ENST00000568191 PPP1R12BO60237 982 aaPredicted RBP6.13□□□□□ -1.43
VPS35-207ENST00000568191 ARAFP10398 606 aa6.13□□□□□ -1.43
VPS35-207ENST00000568191 FOXK2Q01167 660 aa6.13□□□□□ -1.43
VPS35-207ENST00000568191 NEUROD1Q13562 356 aa6.13□□□□□ -1.43
VPS35-207ENST00000568191 SAMD5Q5TGI4 173 aa6.13□□□□□ -1.43
VPS35-207ENST00000568191 C1orf53Q5VUE5 145 aa6.13□□□□□ -1.43
VPS35-207ENST00000568191 RHPN1Q8TCX5 695 aa6.13□□□□□ -1.43
VPS35-207ENST00000568191 EDARADDQ8WWZ3 215 aa6.13□□□□□ -1.43
VPS35-207ENST00000568191 HINFPQ9BQA5 517 aa6.13□□□□□ -1.43
VPS35-207ENST00000568191 RRAGCQ9HB90 399 aa6.13□□□□□ -1.43
VPS35-207ENST00000568191 NDFIP2Q9NV92 336 aa6.13□□□□□ -1.43
VPS35-207ENST00000568191 DCDC2BA2VCK2 349 aa6.12□□□□□ -1.43
VPS35-207ENST00000568191 THBS1P07996 1170 aa6.12□□□□□ -1.43
VPS35-207ENST00000568191 FAM157BP0CG42 384 aa6.12□□□□□ -1.43
VPS35-207ENST00000568191 MAPTP10636 758 aaKnown RBP6.12□□□□□ -1.43
VPS35-207ENST00000568191 LMOD1P29536 600 aaPredicted RBP6.12□□□□□ -1.43
VPS35-207ENST00000568191 EPHA4P54764 986 aa6.12□□□□□ -1.43
VPS35-207ENST00000568191 CTBSQ01459 385 aa6.12□□□□□ -1.43
VPS35-207ENST00000568191 TNP2Q05952 138 aa6.12□□□□□ -1.43
VPS35-207ENST00000568191 UBAP2LQ14157 1087 aaKnown RBP6.12□□□□□ -1.43
VPS35-207ENST00000568191 FAM182BQ5T319 152 aa6.12□□□□□ -1.43
VPS35-207ENST00000568191 AVENQ9NQS1 362 aaPredicted RBP6.12□□□□□ -1.43
VPS35-207ENST00000568191 MARK1Q9P0L2 795 aa6.12□□□□□ -1.43
VPS35-207ENST00000568191 MKL2Q9ULH7 1088 aa6.12□□□□□ -1.43
VPS35-207ENST00000568191 DNMT3AQ9Y6K1 912 aaPredicted RBP6.12□□□□□ -1.43
VPS35-207ENST00000568191 SFI1A8K8P3 1242 aa6.11□□□□□ -1.43
VPS35-207ENST00000568191 ADH6P28332 368 aa6.11□□□□□ -1.43
VPS35-207ENST00000568191 TXLNAP40222 546 aa6.11□□□□□ -1.43
VPS35-207ENST00000568191 TBCELQ5QJ74 424 aa6.11□□□□□ -1.43
VPS35-207ENST00000568191 LRRC69Q6ZNQ3 347 aa6.11□□□□□ -1.43
VPS35-207ENST00000568191 SLCO4C1Q6ZQN7 724 aa6.11□□□□□ -1.43
VPS35-207ENST00000568191 ZNF295-AS1Q8N0V1 137 aa6.11□□□□□ -1.43
VPS35-207ENST00000568191 TSPAN10Q9H1Z9 355 aaPredicted RBP6.11□□□□□ -1.43
VPS35-207ENST00000568191 GGA1Q9UJY5 639 aa6.11□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms