RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 POLRMTO00411 1230 aaKnown RBP21.58■■□□□ 1.04
CLN3-229ENST00000567963 PHACTR3Q96KR7 559 aa21.58■■□□□ 1.04
CLN3-229ENST00000567963 NARFQ9UHQ1 456 aa21.58■■□□□ 1.04
CLN3-229ENST00000567963 COL15A1P39059 1388 aa21.57■■□□□ 1.04
CLN3-229ENST00000567963 ZNF790Q6PG37 636 aa21.57■■□□□ 1.04
CLN3-229ENST00000567963 RSPH6AQ9H0K4 717 aa21.57■■□□□ 1.04
CLN3-229ENST00000567963 FCHSD2O94868 740 aa21.56■■□□□ 1.04
CLN3-229ENST00000567963 PPP2R1AP30153 589 aa21.56■■□□□ 1.04
CLN3-229ENST00000567963 PRKAR2BP31323 418 aa21.56■■□□□ 1.04
CLN3-229ENST00000567963 ZNF526Q8TF50 670 aaPredicted RBP21.56■■□□□ 1.04
CLN3-229ENST00000567963 NUDCQ9Y266 331 aa21.56■■□□□ 1.04
CLN3-229ENST00000567963 STARD3NLO95772 234 aa21.55■■□□□ 1.04
CLN3-229ENST00000567963 ZNF496Q96IT1 587 aaPredicted RBP21.55■■□□□ 1.04
CLN3-229ENST00000567963 PIM2Q9P1W9 311 aa21.55■■□□□ 1.04
CLN3-229ENST00000567963 SIPA1L3O60292 1781 aaPredicted RBP21.55■■□□□ 1.04
CLN3-229ENST00000567963 CEMIPQ8WUJ3 1361 aa21.55■■□□□ 1.04
CLN3-229ENST00000567963 CANXP27824 592 aaKnown RBP21.54■■□□□ 1.04
CLN3-229ENST00000567963 ARHGAP27Q6ZUM4 889 aa21.54■■□□□ 1.04
CLN3-229ENST00000567963 NFIXQ14938 502 aa21.53■■□□□ 1.04
CLN3-229ENST00000567963 BCL2L12Q9HB09 334 aa21.53■■□□□ 1.04
CLN3-229ENST00000567963 HEG1Q9ULI3 1381 aa21.53■■□□□ 1.04
CLN3-229ENST00000567963 TEX13AQ9BXU3 409 aaPredicted RBP21.52■■□□□ 1.04
CLN3-229ENST00000567963 U2AF1L5P0DN76 240 aaPredicted RBP21.52■■□□□ 1.03
CLN3-229ENST00000567963 EIF5P55010 431 aaKnown RBP21.52■■□□□ 1.03
CLN3-229ENST00000567963 U2AF1Q01081 240 aaKnown RBP eCLIP21.52■■□□□ 1.03
CLN3-229ENST00000567963 ARFGEF1Q9Y6D6 1849 aa21.51■■□□□ 1.03
CLN3-229ENST00000567963 CHRNA5P30532 468 aa21.51■■□□□ 1.03
CLN3-229ENST00000567963 DALRD3Q5D0E6 543 aaKnown RBP21.51■■□□□ 1.03
CLN3-229ENST00000567963 AFDNP55196 1824 aaKnown RBP21.5■■□□□ 1.03
CLN3-229ENST00000567963 BTBD11A6QL63 1104 aa21.5■■□□□ 1.03
CLN3-229ENST00000567963 FMNL2Q96PY5 1086 aa21.5■■□□□ 1.03
CLN3-229ENST00000567963 CEP350Q5VT06 3117 aa21.5■■□□□ 1.03
CLN3-229ENST00000567963 A0A087WZG4 1122 aa21.48■■□□□ 1.03
CLN3-229ENST00000567963 SERPINB2P05120 415 aa21.48■■□□□ 1.03
CLN3-229ENST00000567963 NRXN2Q9P2S2 1712 aa21.48■■□□□ 1.03
CLN3-229ENST00000567963 KCNQ3O43525 872 aa21.47■■□□□ 1.03
CLN3-229ENST00000567963 KIF3CO14782 793 aa21.46■■□□□ 1.03
CLN3-229ENST00000567963 IL6STP40189 918 aaPredicted RBP21.46■■□□□ 1.03
CLN3-229ENST00000567963 RTF1Q92541 710 aaKnown RBP21.45■■□□□ 1.03
CLN3-229ENST00000567963 A1BGP04217 495 aa21.45■■□□□ 1.02
CLN3-229ENST00000567963 BICDL1Q6ZP65 573 aa21.45■■□□□ 1.02
CLN3-229ENST00000567963 MCM10Q7L590 875 aa21.45■■□□□ 1.02
CLN3-229ENST00000567963 TBC1D2BQ9UPU7 963 aa21.45■■□□□ 1.02
CLN3-229ENST00000567963 C9orf131Q5VYM1 1079 aa21.44■■□□□ 1.02
CLN3-229ENST00000567963 ZNF330Q9Y3S2 320 aaPredicted RBP21.44■■□□□ 1.02
CLN3-229ENST00000567963 HTATSF1O43719 755 aaKnown RBP21.43■■□□□ 1.02
CLN3-229ENST00000567963 TBC1D9BQ66K14 1250 aa21.43■■□□□ 1.02
CLN3-229ENST00000567963 USP16Q9Y5T5 823 aa21.43■■□□□ 1.02
CLN3-229ENST00000567963 DCTN1Q14203 1278 aa21.41■■□□□ 1.02
CLN3-229ENST00000567963 NPM2Q86SE8 214 aaKnown RBP21.41■■□□□ 1.02
CLN3-229ENST00000567963 SCN7AQ01118 1682 aa21.4■■□□□ 1.02
CLN3-229ENST00000567963 PRAMEF22A3QJZ6 481 aa21.39■■□□□ 1.02
CLN3-229ENST00000567963 CARMIL3Q8ND23 1372 aa21.39■■□□□ 1.02
CLN3-229ENST00000567963 DLEC1Q9Y238 1755 aa21.39■■□□□ 1.01
CLN3-229ENST00000567963 SBF1O95248 1867 aa21.39■■□□□ 1.01
CLN3-229ENST00000567963 H0YIN7 160 aa21.39■■□□□ 1.01
CLN3-229ENST00000567963 CAMTA2O94983 1202 aa21.39■■□□□ 1.01
CLN3-229ENST00000567963 SNRPA1P09661 255 aaKnown RBP21.39■■□□□ 1.01
CLN3-229ENST00000567963 HSPA6P17066 643 aa21.39■■□□□ 1.01
CLN3-229ENST00000567963 C2CD5Q86YS7 1000 aa21.39■■□□□ 1.01
CLN3-229ENST00000567963 TTLL6Q8N841 843 aa21.39■■□□□ 1.01
CLN3-229ENST00000567963 RNF181Q9P0P0 153 aa21.38■■□□□ 1.01
CLN3-229ENST00000567963 PIP4K2AP48426 406 aaPredicted RBP21.37■■□□□ 1.01
CLN3-229ENST00000567963 TAF7Q15545 349 aaPredicted RBP21.37■■□□□ 1.01
CLN3-229ENST00000567963 DZIP3Q86Y13 1208 aaKnown RBP21.37■■□□□ 1.01
CLN3-229ENST00000567963 SETDB2Q96T68 719 aa21.37■■□□□ 1.01
CLN3-229ENST00000567963 NMRK2Q9NPI5 230 aa21.37■■□□□ 1.01
CLN3-229ENST00000567963 TOMM70O94826 608 aa21.36■■□□□ 1.01
CLN3-229ENST00000567963 NEFMP07197 916 aa21.36■■□□□ 1.01
CLN3-229ENST00000567963 PRR5LQ6MZQ0 368 aa21.36■■□□□ 1.01
CLN3-229ENST00000567963 BRIP1Q9BX63 1249 aa21.36■■□□□ 1.01
CLN3-229ENST00000567963 PDE6BP35913 854 aa21.35■■□□□ 1.01
CLN3-229ENST00000567963 PLEKHF1Q96S99 279 aa21.35■■□□□ 1.01
CLN3-229ENST00000567963 PDZRN3Q9UPQ7 1066 aa21.35■■□□□ 1.01
CLN3-229ENST00000567963 ANKRD31Q8N7Z5 1873 aa21.35■■□□□ 1.01
CLN3-229ENST00000567963 CCDC24Q8N4L8 307 aa21.34■■□□□ 1.01
CLN3-229ENST00000567963 BCORQ6W2J9 1755 aa21.33■■□□□ 1.01
CLN3-229ENST00000567963 RASSF7Q02833 373 aa21.33■■□□□ 1.01
CLN3-229ENST00000567963 CLEC4GQ6UXB4 293 aa21.33■■□□□ 1.01
CLN3-229ENST00000567963 MIS18AQ9NYP9 233 aa21.33■■□□□ 1.01
CLN3-229ENST00000567963 DLG5Q8TDM6 1919 aa21.33■■□□□ 1.01
CLN3-229ENST00000567963 KDM2BQ8NHM5 1336 aa21.32■■□□□ 1
CLN3-229ENST00000567963 NBPF26B4DH59 902 aa21.32■■□□□ 1
CLN3-229ENST00000567963 NBPF10Q6P3W6 841 aaKnown RBP21.32■■□□□ 1
CLN3-229ENST00000567963 NBPF15Q8N660 670 aa21.32■■□□□ 1
CLN3-229ENST00000567963 CNBD1Q8NA66 436 aa21.32■■□□□ 1
CLN3-229ENST00000567963 ZNF622Q969S3 477 aaKnown RBP eCLIP21.32■■□□□ 1
CLN3-229ENST00000567963 LMNB1P20700 586 aa21.31■■□□□ 1
CLN3-229ENST00000567963 PRELPP51888 382 aa21.31■■□□□ 1
CLN3-229ENST00000567963 NPHP1O15259 732 aa21.3■■□□□ 1
CLN3-229ENST00000567963 PNISRQ8TF01 805 aaKnown RBP21.3■■□□□ 1
CLN3-229ENST00000567963 PNNQ9H307 717 aaKnown RBP21.3■■□□□ 1
CLN3-229ENST00000567963 ZC3H4Q9UPT8 1303 aaKnown RBP21.29■■□□□ 1
CLN3-229ENST00000567963 ST5P78524 1137 aa21.29■■□□□ 1
CLN3-229ENST00000567963 NFE2L2Q16236 605 aa21.29■■□□□ 1
CLN3-229ENST00000567963 ZNF652Q9Y2D9 606 aa21.29■■□□□ 1
CLN3-229ENST00000567963 RRAGCQ9HB90 399 aa21.28■■□□□ 1
CLN3-229ENST00000567963 CCDC88AQ3V6T2 1871 aa21.28■■□□□ 1
CLN3-229ENST00000567963 COL11A2P13942 1736 aaPredicted RBP21.28■■□□□ 1
CLN3-229ENST00000567963 NFKBIEO00221 500 aa21.27■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 71.1 ms