RNA–Protein interactions for RNA: ENST00000567805.5

CLK3-219, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 327 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-219ENST00000567805 DLG5Q8TDM6 1919 aa6.42□□□□□ -1.38
CLK3-219ENST00000567805 KCPQ6ZWJ8 1503 aa6.42□□□□□ -1.38
CLK3-219ENST00000567805 RNMTO43148 476 aaKnown RBP6.42□□□□□ -1.38
CLK3-219ENST00000567805 PTCD1O75127 700 aaKnown RBP6.42□□□□□ -1.38
CLK3-219ENST00000567805 PPP2R1AP30153 589 aa6.42□□□□□ -1.38
CLK3-219ENST00000567805 CLCN6P51797 869 aa6.42□□□□□ -1.38
CLK3-219ENST00000567805 TRAPPC3LQ5T215 181 aa6.42□□□□□ -1.38
CLK3-219ENST00000567805 GAS2L2Q8NHY3 880 aa6.42□□□□□ -1.38
CLK3-219ENST00000567805 LGR6Q9HBX8 967 aa6.42□□□□□ -1.38
CLK3-219ENST00000567805 NUDCQ9Y266 331 aa6.42□□□□□ -1.38
CLK3-219ENST00000567805 CD2APQ9Y5K6 639 aa6.42□□□□□ -1.38
CLK3-219ENST00000567805 POTEB2H3BUK9 544 aa6.41□□□□□ -1.38
CLK3-219ENST00000567805 RPS6KA4O75676 772 aa6.41□□□□□ -1.38
CLK3-219ENST00000567805 GPR162Q16538 588 aa6.41□□□□□ -1.38
CLK3-219ENST00000567805 SMIM5Q71RC9 77 aa6.41□□□□□ -1.38
CLK3-219ENST00000567805 NLGN2Q8NFZ4 835 aa6.41□□□□□ -1.38
CLK3-219ENST00000567805 RSPH6AQ9H0K4 717 aa6.41□□□□□ -1.38
CLK3-219ENST00000567805 KIAA1551Q9HCM1 1747 aa6.41□□□□□ -1.38
CLK3-219ENST00000567805 BRCA1P38398 1863 aaKnown RBP6.41□□□□□ -1.38
CLK3-219ENST00000567805 N4BP2Q86UW6 1770 aaPredicted RBP6.4□□□□□ -1.38
CLK3-219ENST00000567805 POTEMA6NI47 508 aa6.4□□□□□ -1.38
CLK3-219ENST00000567805 GNAT3A8MTJ3 354 aa6.4□□□□□ -1.38
CLK3-219ENST00000567805 RFC4P35249 363 aa6.4□□□□□ -1.38
CLK3-219ENST00000567805 CRKLP46109 303 aaKnown RBP6.4□□□□□ -1.38
CLK3-219ENST00000567805 VSIG10Q8N0Z9 540 aa6.4□□□□□ -1.38
CLK3-219ENST00000567805 NLGN1Q8N2Q7 840 aa6.4□□□□□ -1.38
CLK3-219ENST00000567805 ARHGEF1Q92888 912 aaKnown RBP6.4□□□□□ -1.38
CLK3-219ENST00000567805 AFDNP55196 1824 aaKnown RBP6.39□□□□□ -1.39
CLK3-219ENST00000567805 FCHSD2O94868 740 aa6.39□□□□□ -1.39
CLK3-219ENST00000567805 MMP10P09238 476 aa6.39□□□□□ -1.39
CLK3-219ENST00000567805 U2AF1L5P0DN76 240 aaPredicted RBP6.39□□□□□ -1.39
CLK3-219ENST00000567805 GYS1P13807 737 aa6.39□□□□□ -1.39
CLK3-219ENST00000567805 PRKAR2BP31323 418 aa6.39□□□□□ -1.39
CLK3-219ENST00000567805 U2AF1Q01081 240 aaKnown RBP eCLIP6.39□□□□□ -1.39
CLK3-219ENST00000567805 TEFQ10587 303 aa6.39□□□□□ -1.39
CLK3-219ENST00000567805 SLC39A6Q13433 755 aa6.39□□□□□ -1.39
CLK3-219ENST00000567805 DNAJC10Q8IXB1 793 aa6.39□□□□□ -1.39
CLK3-219ENST00000567805 TTC5Q8N0Z6 440 aa6.39□□□□□ -1.39
CLK3-219ENST00000567805 IL17REQ8NFR9 667 aa6.39□□□□□ -1.39
CLK3-219ENST00000567805 PHACTR3Q96KR7 559 aa6.39□□□□□ -1.39
CLK3-219ENST00000567805 CCDC87Q9NVE4 849 aa6.39□□□□□ -1.39
CLK3-219ENST00000567805 CEMIPQ8WUJ3 1361 aa6.39□□□□□ -1.39
CLK3-219ENST00000567805 GRIN3BO60391 1043 aa6.38□□□□□ -1.39
CLK3-219ENST00000567805 CYP19A1P11511 503 aaPredicted RBP6.38□□□□□ -1.39
CLK3-219ENST00000567805 INTS5Q6P9B9 1019 aaKnown RBP6.38□□□□□ -1.39
CLK3-219ENST00000567805 ZNF790Q6PG37 636 aa6.38□□□□□ -1.39
CLK3-219ENST00000567805 PELP1Q8IZL8 1130 aaKnown RBP6.38□□□□□ -1.39
CLK3-219ENST00000567805 SOS1Q07889 1333 aaPredicted RBP6.38□□□□□ -1.39
CLK3-219ENST00000567805 USP42Q9H9J4 1324 aaKnown RBP6.38□□□□□ -1.39
CLK3-219ENST00000567805 C10orf71Q711Q0 1435 aa6.38□□□□□ -1.39
CLK3-219ENST00000567805 SCN7AQ01118 1682 aa6.38□□□□□ -1.39
CLK3-219ENST00000567805 NRXN2Q9P2S2 1712 aa6.38□□□□□ -1.39
CLK3-219ENST00000567805 LAMB4A4D0S4 1761 aa6.38□□□□□ -1.39
CLK3-219ENST00000567805 ARFGEF1Q9Y6D6 1849 aa6.38□□□□□ -1.39
CLK3-219ENST00000567805 BCORQ6W2J9 1755 aa6.37□□□□□ -1.39
CLK3-219ENST00000567805 KDM3BQ7LBC6 1761 aa6.37□□□□□ -1.39
CLK3-219ENST00000567805 COL15A1P39059 1388 aa6.37□□□□□ -1.39
CLK3-219ENST00000567805 HEG1Q9ULI3 1381 aa6.37□□□□□ -1.39
CLK3-219ENST00000567805 HTATSF1O43719 755 aaKnown RBP6.37□□□□□ -1.39
CLK3-219ENST00000567805 ZPR1O75312 459 aa6.37□□□□□ -1.39
CLK3-219ENST00000567805 STARD3NLO95772 234 aa6.37□□□□□ -1.39
CLK3-219ENST00000567805 NEFMP07197 916 aa6.37□□□□□ -1.39
CLK3-219ENST00000567805 YBX3P16989 372 aaKnown RBP eCLIP6.37□□□□□ -1.393e-6■■■■□ 19.5
CLK3-219ENST00000567805 RALBP1Q15311 655 aa6.37□□□□□ -1.39
CLK3-219ENST00000567805 ZNF579Q8NAF0 562 aaKnown RBP6.37□□□□□ -1.39
CLK3-219ENST00000567805 RTF1Q92541 710 aaKnown RBP6.37□□□□□ -1.39
CLK3-219ENST00000567805 ZNF496Q96IT1 587 aaPredicted RBP6.37□□□□□ -1.39
CLK3-219ENST00000567805 TEX13AQ9BXU3 409 aaPredicted RBP6.37□□□□□ -1.39
CLK3-219ENST00000567805 PARP3Q9Y6F1 533 aa6.37□□□□□ -1.39
CLK3-219ENST00000567805 DLEC1Q9Y238 1755 aa6.36□□□□□ -1.39
CLK3-219ENST00000567805 PXDNLA1KZ92 1463 aa6.36□□□□□ -1.39
CLK3-219ENST00000567805 BTBD11A6QL63 1104 aa6.36□□□□□ -1.39
CLK3-219ENST00000567805 GALR2O43603 387 aaPredicted RBP6.36□□□□□ -1.39
CLK3-219ENST00000567805 TGFB2P61812 414 aa6.36□□□□□ -1.39
CLK3-219ENST00000567805 POTEGQ6S5H5 508 aa6.36□□□□□ -1.39
CLK3-219ENST00000567805 ZNF784Q8NCA9 323 aaPredicted RBP6.36□□□□□ -1.39
CLK3-219ENST00000567805 FMNL2Q96PY5 1086 aa6.36□□□□□ -1.39
CLK3-219ENST00000567805 PNNQ9H307 717 aaKnown RBP6.36□□□□□ -1.39
CLK3-219ENST00000567805 SRP68Q9UHB9 627 aaKnown RBP6.36□□□□□ -1.39
CLK3-219ENST00000567805 ZBTB1Q9Y2K1 713 aa6.36□□□□□ -1.39
CLK3-219ENST00000567805 DDX10Q13206 875 aaKnown RBP6.35□□□□□ -1.39
CLK3-219ENST00000567805 USPL1Q5W0Q7 1092 aa6.35□□□□□ -1.39
CLK3-219ENST00000567805 MCM10Q7L590 875 aa6.35□□□□□ -1.39
CLK3-219ENST00000567805 PLEKHF1Q96S99 279 aa6.35□□□□□ -1.39
CLK3-219ENST00000567805 NARFQ9UHQ1 456 aa6.35□□□□□ -1.39
CLK3-219ENST00000567805 MYBBP1AQ9BQG0 1328 aaKnown RBP6.34□□□□□ -1.39
CLK3-219ENST00000567805 MAPK8IP3Q9UPT6 1336 aa6.34□□□□□ -1.39
CLK3-219ENST00000567805 A0A087WZG4 1122 aa6.34□□□□□ -1.39
CLK3-219ENST00000567805 POLRMTO00411 1230 aaKnown RBP6.34□□□□□ -1.39
CLK3-219ENST00000567805 CANXP27824 592 aaKnown RBP6.34□□□□□ -1.39
CLK3-219ENST00000567805 TM4SF1P30408 202 aa6.34□□□□□ -1.39
CLK3-219ENST00000567805 IL6STP40189 918 aaPredicted RBP6.34□□□□□ -1.39
CLK3-219ENST00000567805 EIF5P55010 431 aaKnown RBP6.34□□□□□ -1.39
CLK3-219ENST00000567805 DDR1Q08345 913 aa6.34□□□□□ -1.39
CLK3-219ENST00000567805 NFE2L2Q16236 605 aa6.34□□□□□ -1.39
CLK3-219ENST00000567805 ANKRD31Q8N7Z5 1873 aa6.34□□□□□ -1.39
CLK3-219ENST00000567805 SBF1O95248 1867 aa6.33□□□□□ -1.4
CLK3-219ENST00000567805 A0A0G2JLW4 131 aa6.33□□□□□ -1.4
CLK3-219ENST00000567805 KCNQ3O43525 872 aa6.33□□□□□ -1.4
CLK3-219ENST00000567805 SNRPA1P09661 255 aaKnown RBP6.33□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms