RNA–Protein interactions for RNA: ENST00000566723.1

SMPD3-208, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 4

Gene SMPD3, Length 524 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-208ENST00000566723 ZPR1O75312 459 aa20.37■□□□□ 0.85
SMPD3-208ENST00000566723 IL17REQ8NFR9 667 aa20.37■□□□□ 0.85
SMPD3-208ENST00000566723 NUDCQ9Y266 331 aa20.37■□□□□ 0.85
SMPD3-208ENST00000566723 SCN7AQ01118 1682 aa20.36■□□□□ 0.85
SMPD3-208ENST00000566723 USPL1Q5W0Q7 1092 aa20.36■□□□□ 0.85
SMPD3-208ENST00000566723 DPEP1P16444 411 aa20.35■□□□□ 0.85
SMPD3-208ENST00000566723 PHACTR3Q96KR7 559 aa20.35■□□□□ 0.85
SMPD3-208ENST00000566723 BCS1LQ9Y276 419 aa20.35■□□□□ 0.85
SMPD3-208ENST00000566723 HEG1Q9ULI3 1381 aa20.34■□□□□ 0.85
SMPD3-208ENST00000566723 DLEC1Q9Y238 1755 aa20.34■□□□□ 0.85
SMPD3-208ENST00000566723 POLRMTO00411 1230 aaKnown RBP20.34■□□□□ 0.85
SMPD3-208ENST00000566723 ZNF790Q6PG37 636 aa20.34■□□□□ 0.85
SMPD3-208ENST00000566723 NARFQ9UHQ1 456 aa20.34■□□□□ 0.85
SMPD3-208ENST00000566723 STARD3NLO95772 234 aa20.33■□□□□ 0.85
SMPD3-208ENST00000566723 U2AF1L5P0DN76 240 aaPredicted RBP20.33■□□□□ 0.85
SMPD3-208ENST00000566723 TM4SF1P30408 202 aa20.33■□□□□ 0.85
SMPD3-208ENST00000566723 U2AF1Q01081 240 aaKnown RBP eCLIP20.33■□□□□ 0.85
SMPD3-208ENST00000566723 ZNF496Q96IT1 587 aaPredicted RBP20.33■□□□□ 0.85
SMPD3-208ENST00000566723 DLG5Q8TDM6 1919 aa20.33■□□□□ 0.84
SMPD3-208ENST00000566723 GPBP1L1Q9HC44 474 aaPredicted RBP20.32■□□□□ 0.84
SMPD3-208ENST00000566723 SENP3-EIF4A1A0A087X0R7 540 aa20.31■□□□□ 0.84
SMPD3-208ENST00000566723 FCHSD2O94868 740 aa20.31■□□□□ 0.84
SMPD3-208ENST00000566723 KCNA3P22001 575 aa20.31■□□□□ 0.84
SMPD3-208ENST00000566723 CANXP27824 592 aaKnown RBP20.3■□□□□ 0.84
SMPD3-208ENST00000566723 FMNL2Q96PY5 1086 aa20.3■□□□□ 0.84
SMPD3-208ENST00000566723 TEX13AQ9BXU3 409 aaPredicted RBP20.3■□□□□ 0.84
SMPD3-208ENST00000566723 BCORQ6W2J9 1755 aa20.3■□□□□ 0.84
SMPD3-208ENST00000566723 EIF5P55010 431 aaKnown RBP20.29■□□□□ 0.84
SMPD3-208ENST00000566723 NFIXQ14938 502 aa20.29■□□□□ 0.84
SMPD3-208ENST00000566723 ZNF526Q8TF50 670 aaPredicted RBP20.29■□□□□ 0.84
SMPD3-208ENST00000566723 BCL2L12Q9HB09 334 aa20.29■□□□□ 0.84
SMPD3-208ENST00000566723 PIM2Q9P1W9 311 aa20.29■□□□□ 0.84
SMPD3-208ENST00000566723 BTBD11A6QL63 1104 aa20.28■□□□□ 0.84
SMPD3-208ENST00000566723 SBF1O95248 1867 aa20.28■□□□□ 0.84
SMPD3-208ENST00000566723 A0A087WZG4 1122 aa20.27■□□□□ 0.84
SMPD3-208ENST00000566723 ARHGAP27Q6ZUM4 889 aa20.27■□□□□ 0.84
SMPD3-208ENST00000566723 ANKRD31Q8N7Z5 1873 aa20.26■□□□□ 0.83
SMPD3-208ENST00000566723 CHRNA5P30532 468 aa20.26■□□□□ 0.83
SMPD3-208ENST00000566723 DALRD3Q5D0E6 543 aaKnown RBP20.26■□□□□ 0.83
SMPD3-208ENST00000566723 RTF1Q92541 710 aaKnown RBP20.26■□□□□ 0.83
SMPD3-208ENST00000566723 KCNQ3O43525 872 aa20.25■□□□□ 0.83
SMPD3-208ENST00000566723 LAMB4A4D0S4 1761 aa20.25■□□□□ 0.83
SMPD3-208ENST00000566723 CEP350Q5VT06 3117 aa20.25■□□□□ 0.83
SMPD3-208ENST00000566723 SERPINB2P05120 415 aa20.24■□□□□ 0.83
SMPD3-208ENST00000566723 IL6STP40189 918 aaPredicted RBP20.24■□□□□ 0.83
SMPD3-208ENST00000566723 MCM10Q7L590 875 aa20.24■□□□□ 0.83
SMPD3-208ENST00000566723 KDM3BQ7LBC6 1761 aa20.23■□□□□ 0.83
SMPD3-208ENST00000566723 COL11A2P13942 1736 aaPredicted RBP20.23■□□□□ 0.83
SMPD3-208ENST00000566723 ZNF330Q9Y3S2 320 aaPredicted RBP20.23■□□□□ 0.83
SMPD3-208ENST00000566723 CARMIL3Q8ND23 1372 aa20.22■□□□□ 0.83
SMPD3-208ENST00000566723 HTATSF1O43719 755 aaKnown RBP20.22■□□□□ 0.83
SMPD3-208ENST00000566723 A1BGP04217 495 aa20.21■□□□□ 0.83
SMPD3-208ENST00000566723 BICDL1Q6ZP65 573 aa20.21■□□□□ 0.83
SMPD3-208ENST00000566723 CCDC88AQ3V6T2 1871 aa20.2■□□□□ 0.82
SMPD3-208ENST00000566723 DCTN1Q14203 1278 aa20.2■□□□□ 0.82
SMPD3-208ENST00000566723 TBC1D9BQ66K14 1250 aa20.2■□□□□ 0.82
SMPD3-208ENST00000566723 NPM2Q86SE8 214 aaKnown RBP20.2■□□□□ 0.82
SMPD3-208ENST00000566723 TBC1D2BQ9UPU7 963 aa20.2■□□□□ 0.82
SMPD3-208ENST00000566723 NEFMP07197 916 aa20.19■□□□□ 0.82
SMPD3-208ENST00000566723 CACNA1SQ13698 1873 aa20.19■□□□□ 0.82
SMPD3-208ENST00000566723 KIF3CO14782 793 aa20.18■□□□□ 0.82
SMPD3-208ENST00000566723 CAMTA2O94983 1202 aa20.18■□□□□ 0.82
SMPD3-208ENST00000566723 SNRPA1P09661 255 aaKnown RBP20.18■□□□□ 0.82
SMPD3-208ENST00000566723 C9orf131Q5VYM1 1079 aa20.18■□□□□ 0.82
SMPD3-208ENST00000566723 USP16Q9Y5T5 823 aa20.18■□□□□ 0.82
SMPD3-208ENST00000566723 PRAMEF22A3QJZ6 481 aa20.17■□□□□ 0.82
SMPD3-208ENST00000566723 TNRC6CQ9HCJ0 1690 aaKnown RBP20.16■□□□□ 0.82
SMPD3-208ENST00000566723 TIAM2Q8IVF5 1701 aa20.16■□□□□ 0.82
SMPD3-208ENST00000566723 ARFGEF2Q9Y6D5 1785 aa20.16■□□□□ 0.82
SMPD3-208ENST00000566723 DZIP3Q86Y13 1208 aaKnown RBP20.16■□□□□ 0.82
SMPD3-208ENST00000566723 C2CD5Q86YS7 1000 aa20.16■□□□□ 0.82
SMPD3-208ENST00000566723 PLEKHF1Q96S99 279 aa20.16■□□□□ 0.82
SMPD3-208ENST00000566723 PIP4K2AP48426 406 aaPredicted RBP20.15■□□□□ 0.82
SMPD3-208ENST00000566723 TAF7Q15545 349 aaPredicted RBP20.15■□□□□ 0.82
SMPD3-208ENST00000566723 PRR5LQ6MZQ0 368 aa20.15■□□□□ 0.82
SMPD3-208ENST00000566723 TTLL6Q8N841 843 aa20.15■□□□□ 0.82
SMPD3-208ENST00000566723 RNF181Q9P0P0 153 aa20.15■□□□□ 0.82
SMPD3-208ENST00000566723 H0YIN7 160 aa20.14■□□□□ 0.81
SMPD3-208ENST00000566723 FER1L6Q2WGJ9 1857 aa20.13■□□□□ 0.81
SMPD3-208ENST00000566723 NFE2L2Q16236 605 aa20.13■□□□□ 0.81
SMPD3-208ENST00000566723 SETDB2Q96T68 719 aa20.13■□□□□ 0.81
SMPD3-208ENST00000566723 BRIP1Q9BX63 1249 aa20.13■□□□□ 0.81
SMPD3-208ENST00000566723 PDZRN3Q9UPQ7 1066 aa20.13■□□□□ 0.81
SMPD3-208ENST00000566723 DICER1Q9UPY3 1922 aaKnown RBP20.13■□□□□ 0.81
SMPD3-208ENST00000566723 MAPK8IP3Q9UPT6 1336 aa20.12■□□□□ 0.81
SMPD3-208ENST00000566723 HSPA6P17066 643 aa20.12■□□□□ 0.81
SMPD3-208ENST00000566723 PDE6BP35913 854 aa20.12■□□□□ 0.81
SMPD3-208ENST00000566723 RASSF7Q02833 373 aa20.12■□□□□ 0.81
SMPD3-208ENST00000566723 RALBP1Q15311 655 aa20.12■□□□□ 0.81
SMPD3-208ENST00000566723 CNBD1Q8NA66 436 aa20.12■□□□□ 0.81
SMPD3-208ENST00000566723 PNISRQ8TF01 805 aaKnown RBP20.12■□□□□ 0.81
SMPD3-208ENST00000566723 PNNQ9H307 717 aaKnown RBP20.12■□□□□ 0.81
SMPD3-208ENST00000566723 NMRK2Q9NPI5 230 aa20.12■□□□□ 0.81
SMPD3-208ENST00000566723 NBPF26B4DH59 902 aa20.11■□□□□ 0.81
SMPD3-208ENST00000566723 NBPF10Q6P3W6 841 aaKnown RBP20.11■□□□□ 0.81
SMPD3-208ENST00000566723 CLEC4GQ6UXB4 293 aa20.11■□□□□ 0.81
SMPD3-208ENST00000566723 NBPF15Q8N660 670 aa20.11■□□□□ 0.81
SMPD3-208ENST00000566723 MIS18AQ9NYP9 233 aa20.11■□□□□ 0.81
SMPD3-208ENST00000566723 ZNF652Q9Y2D9 606 aa20.11■□□□□ 0.81
SMPD3-208ENST00000566723 NUP98P52948 1817 aa20.11■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms