RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 GNAT3A8MTJ3 354 aa22.78■■□□□ 1.24
CLN3-217ENST00000565354 KDM6AO15550 1401 aaPredicted RBP22.78■■□□□ 1.24
CLN3-217ENST00000565354 KCNA3P22001 575 aa22.78■■□□□ 1.24
CLN3-217ENST00000565354 C9orf131Q5VYM1 1079 aa22.78■■□□□ 1.24
CLN3-217ENST00000565354 DIEXFQ68CQ4 756 aaKnown RBP22.78■■□□□ 1.24
CLN3-217ENST00000565354 CCDC184Q52MB2 194 aa22.77■■□□□ 1.24
CLN3-217ENST00000565354 RTF1Q92541 710 aaKnown RBP22.77■■□□□ 1.24
CLN3-217ENST00000565354 RNMTO43148 476 aaKnown RBP22.76■■□□□ 1.23
CLN3-217ENST00000565354 C16orf71Q8IYS4 520 aaPredicted RBP22.76■■□□□ 1.23
CLN3-217ENST00000565354 PLEKHF1Q96S99 279 aa22.76■■□□□ 1.23
CLN3-217ENST00000565354 ADAMTS8Q9UP79 889 aa22.76■■□□□ 1.23
CLN3-217ENST00000565354 CCDC146Q8IYE0 955 aa22.75■■□□□ 1.23
CLN3-217ENST00000565354 PIM2Q9P1W9 311 aa22.75■■□□□ 1.23
CLN3-217ENST00000565354 SCN11AQ9UI33 1791 aa22.75■■□□□ 1.23
CLN3-217ENST00000565354 SBF1O95248 1867 aa22.75■■□□□ 1.23
CLN3-217ENST00000565354 FSTL1Q12841 308 aa22.74■■□□□ 1.23
CLN3-217ENST00000565354 KLRG1Q96E93 195 aa22.74■■□□□ 1.23
CLN3-217ENST00000565354 LGR6Q9HBX8 967 aa22.74■■□□□ 1.23
CLN3-217ENST00000565354 PCNTO95613 3336 aa22.74■■□□□ 1.23
CLN3-217ENST00000565354 RUNDC1Q96C34 613 aa22.73■■□□□ 1.23
CLN3-217ENST00000565354 KCPQ6ZWJ8 1503 aa22.72■■□□□ 1.23
CLN3-217ENST00000565354 HTRA3P83110 453 aa22.72■■□□□ 1.23
CLN3-217ENST00000565354 TEFQ10587 303 aa22.72■■□□□ 1.23
CLN3-217ENST00000565354 NFE2L2Q16236 605 aa22.72■■□□□ 1.23
CLN3-217ENST00000565354 DALRD3Q5D0E6 543 aaKnown RBP22.72■■□□□ 1.23
CLN3-217ENST00000565354 JMYQ8N9B5 988 aa22.72■■□□□ 1.23
CLN3-217ENST00000565354 VIRMAQ69YN4 1812 aaKnown RBP22.72■■□□□ 1.23
CLN3-217ENST00000565354 KDM2BQ8NHM5 1336 aa22.72■■□□□ 1.23
CLN3-217ENST00000565354 TNRC6CQ9HCJ0 1690 aaKnown RBP22.71■■□□□ 1.23
CLN3-217ENST00000565354 NFATC2IPQ8NCF5 419 aa22.71■■□□□ 1.23
CLN3-217ENST00000565354 SLC52A2Q9HAB3 445 aa22.7■■□□□ 1.22
CLN3-217ENST00000565354 RNF181Q9P0P0 153 aa22.7■■□□□ 1.22
CLN3-217ENST00000565354 PTCD1O75127 700 aaKnown RBP22.69■■□□□ 1.22
CLN3-217ENST00000565354 CRKLP46109 303 aaKnown RBP22.69■■□□□ 1.22
CLN3-217ENST00000565354 FKBP8Q14318 412 aa22.69■■□□□ 1.22
CLN3-217ENST00000565354 SRP68Q9UHB9 627 aaKnown RBP22.69■■□□□ 1.22
CLN3-217ENST00000565354 TJP1Q07157 1748 aa22.68■■□□□ 1.22
CLN3-217ENST00000565354 USP42Q9H9J4 1324 aaKnown RBP22.68■■□□□ 1.22
CLN3-217ENST00000565354 HTATSF1O43719 755 aaKnown RBP22.68■■□□□ 1.22
CLN3-217ENST00000565354 DDR1Q08345 913 aa22.68■■□□□ 1.22
CLN3-217ENST00000565354 PNISRQ8TF01 805 aaKnown RBP22.68■■□□□ 1.22
CLN3-217ENST00000565354 ADAMTS7Q9UKP4 1686 aa22.68■■□□□ 1.22
CLN3-217ENST00000565354 RIPK4P57078 832 aa22.67■■□□□ 1.22
CLN3-217ENST00000565354 NEUROD2Q15784 382 aa22.67■■□□□ 1.22
CLN3-217ENST00000565354 COL13A1Q5TAT6 717 aaPredicted RBP22.67■■□□□ 1.22
CLN3-217ENST00000565354 MCM10Q7L590 875 aa22.67■■□□□ 1.22
CLN3-217ENST00000565354 IL17REQ8NFR9 667 aa22.67■■□□□ 1.22
CLN3-217ENST00000565354 RRAGCQ9HB90 399 aa22.67■■□□□ 1.22
CLN3-217ENST00000565354 MRC1P22897 1456 aa22.66■■□□□ 1.22
CLN3-217ENST00000565354 TMPOP42166 694 aaKnown RBP22.66■■□□□ 1.22
CLN3-217ENST00000565354 LMOD3Q0VAK6 560 aa22.66■■□□□ 1.22
CLN3-217ENST00000565354 DLG5Q8TDM6 1919 aa22.66■■□□□ 1.22
CLN3-217ENST00000565354 CHRNA5P30532 468 aa22.65■■□□□ 1.22
CLN3-217ENST00000565354 DCTN1Q14203 1278 aa22.65■■□□□ 1.22
CLN3-217ENST00000565354 FAM9BQ8IZU0 186 aa22.65■■□□□ 1.22
CLN3-217ENST00000565354 RRP7AQ9Y3A4 280 aaKnown RBP22.65■■□□□ 1.22
CLN3-217ENST00000565354 POLRMTO00411 1230 aaKnown RBP22.63■■□□□ 1.21
CLN3-217ENST00000565354 TTC5Q8N0Z6 440 aa22.63■■□□□ 1.21
CLN3-217ENST00000565354 CEMIPQ8WUJ3 1361 aa22.63■■□□□ 1.21
CLN3-217ENST00000565354 AFDNP55196 1824 aaKnown RBP22.62■■□□□ 1.21
CLN3-217ENST00000565354 CCER2I3L3R5 266 aa22.62■■□□□ 1.21
CLN3-217ENST00000565354 TM4SF1P30408 202 aa22.62■■□□□ 1.21
CLN3-217ENST00000565354 SMC1BQ8NDV3 1235 aa22.62■■□□□ 1.21
CLN3-217ENST00000565354 INTS5Q6P9B9 1019 aaKnown RBP22.61■■□□□ 1.21
CLN3-217ENST00000565354 ZC3H4Q9UPT8 1303 aaKnown RBP22.6■■□□□ 1.21
CLN3-217ENST00000565354 BTBD11A6QL63 1104 aa22.6■■□□□ 1.21
CLN3-217ENST00000565354 APAF1O14727 1248 aa22.6■■□□□ 1.21
CLN3-217ENST00000565354 SLC39A6Q13433 755 aa22.6■■□□□ 1.21
CLN3-217ENST00000565354 CCDC88AQ3V6T2 1871 aa22.59■■□□□ 1.21
CLN3-217ENST00000565354 DLEC1Q9Y238 1755 aa22.58■■□□□ 1.21
CLN3-217ENST00000565354 ZPR1O75312 459 aa22.58■■□□□ 1.21
CLN3-217ENST00000565354 RASSF7Q02833 373 aa22.58■■□□□ 1.21
CLN3-217ENST00000565354 THUMPD2Q9BTF0 503 aaKnown RBP22.58■■□□□ 1.21
CLN3-217ENST00000565354 SIPA1L3O60292 1781 aaPredicted RBP22.58■■□□□ 1.2
CLN3-217ENST00000565354 NRXN2Q9P2S2 1712 aa22.57■■□□□ 1.2
CLN3-217ENST00000565354 TAF7Q15545 349 aaPredicted RBP22.57■■□□□ 1.2
CLN3-217ENST00000565354 TNS4Q8IZW8 715 aa22.57■■□□□ 1.2
CLN3-217ENST00000565354 MIER1Q8N108 512 aa22.57■■□□□ 1.2
CLN3-217ENST00000565354 CAPN15O75808 1086 aa22.56■■□□□ 1.2
CLN3-217ENST00000565354 USPL1Q5W0Q7 1092 aa22.56■■□□□ 1.2
CLN3-217ENST00000565354 SOS1Q07889 1333 aaPredicted RBP22.56■■□□□ 1.2
CLN3-217ENST00000565354 LMNB1P20700 586 aa22.55■■□□□ 1.2
CLN3-217ENST00000565354 ZNF790Q6PG37 636 aa22.55■■□□□ 1.2
CLN3-217ENST00000565354 DNAJC10Q8IXB1 793 aa22.55■■□□□ 1.2
CLN3-217ENST00000565354 TIAM2Q8IVF5 1701 aa22.54■■□□□ 1.2
CLN3-217ENST00000565354 GLTPD2A6NH11 291 aa22.54■■□□□ 1.2
CLN3-217ENST00000565354 VEGFAP15692 232 aaPredicted RBP22.54■■□□□ 1.2
CLN3-217ENST00000565354 NFIXQ14938 502 aa22.53■■□□□ 1.2
CLN3-217ENST00000565354 PRELPP51888 382 aa22.52■■□□□ 1.2
CLN3-217ENST00000565354 FMNL2Q96PY5 1086 aa22.52■■□□□ 1.2
CLN3-217ENST00000565354 NARFQ9UHQ1 456 aa22.52■■□□□ 1.2
CLN3-217ENST00000565354 TRIM35Q9UPQ4 493 aa22.52■■□□□ 1.2
CLN3-217ENST00000565354 CYP19A1P11511 503 aaPredicted RBP22.51■■□□□ 1.19
CLN3-217ENST00000565354 MIS18AQ9NYP9 233 aa22.51■■□□□ 1.19
CLN3-217ENST00000565354 LAS1LQ9Y4W2 734 aaKnown RBP22.51■■□□□ 1.19
CLN3-217ENST00000565354 COL15A1P39059 1388 aa22.5■■□□□ 1.19
CLN3-217ENST00000565354 CALD1Q05682 793 aaKnown RBP22.5■■□□□ 1.19
CLN3-217ENST00000565354 TTLL6Q8N841 843 aa22.5■■□□□ 1.19
CLN3-217ENST00000565354 TSPYL4Q9UJ04 414 aa22.5■■□□□ 1.19
CLN3-217ENST00000565354 UBR2Q8IWV8 1755 aa22.5■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 168.6 ms