RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 COL15A1P39059 1388 aa23.03■■□□□ 1.28
CLN3-216ENST00000565316 FCHSD2O94868 740 aa23.03■■□□□ 1.28
CLN3-216ENST00000565316 ZNF526Q8TF50 670 aaPredicted RBP23.03■■□□□ 1.28
CLN3-216ENST00000565316 PIM2Q9P1W9 311 aa23.02■■□□□ 1.28
CLN3-216ENST00000565316 ARHGAP27Q6ZUM4 889 aa23.01■■□□□ 1.27
CLN3-216ENST00000565316 TTC5Q8N0Z6 440 aa23.01■■□□□ 1.27
CLN3-216ENST00000565316 BCL2L12Q9HB09 334 aa23.01■■□□□ 1.27
CLN3-216ENST00000565316 TEFQ10587 303 aa23■■□□□ 1.27
CLN3-216ENST00000565316 NFIXQ14938 502 aa23■■□□□ 1.27
CLN3-216ENST00000565316 ZNF790Q6PG37 636 aa23■■□□□ 1.27
CLN3-216ENST00000565316 ZNF496Q96IT1 587 aaPredicted RBP23■■□□□ 1.27
CLN3-216ENST00000565316 PHACTR3Q96KR7 559 aa23■■□□□ 1.27
CLN3-216ENST00000565316 CFAP53Q96M91 514 aa23■■□□□ 1.27
CLN3-216ENST00000565316 CEMIPQ8WUJ3 1361 aa22.99■■□□□ 1.27
CLN3-216ENST00000565316 STARD3NLO95772 234 aa22.99■■□□□ 1.27
CLN3-216ENST00000565316 DALRD3Q5D0E6 543 aaKnown RBP22.99■■□□□ 1.27
CLN3-216ENST00000565316 RSPH6AQ9H0K4 717 aa22.99■■□□□ 1.27
CLN3-216ENST00000565316 KIF3CO14782 793 aa22.98■■□□□ 1.27
CLN3-216ENST00000565316 EIF5P55010 431 aaKnown RBP22.98■■□□□ 1.27
CLN3-216ENST00000565316 HEG1Q9ULI3 1381 aa22.98■■□□□ 1.27
CLN3-216ENST00000565316 ARFGEF1Q9Y6D6 1849 aa22.97■■□□□ 1.27
CLN3-216ENST00000565316 CANXP27824 592 aaKnown RBP22.97■■□□□ 1.27
CLN3-216ENST00000565316 CHRNA5P30532 468 aa22.97■■□□□ 1.27
CLN3-216ENST00000565316 PRKAR2BP31323 418 aa22.97■■□□□ 1.27
CLN3-216ENST00000565316 TEX13AQ9BXU3 409 aaPredicted RBP22.97■■□□□ 1.27
CLN3-216ENST00000565316 SIPA1L3O60292 1781 aaPredicted RBP22.97■■□□□ 1.27
CLN3-216ENST00000565316 PPP2R1AP30153 589 aa22.96■■□□□ 1.27
CLN3-216ENST00000565316 NRXN2Q9P2S2 1712 aa22.95■■□□□ 1.26
CLN3-216ENST00000565316 A0A087WZG4 1122 aa22.95■■□□□ 1.26
CLN3-216ENST00000565316 NUDCQ9Y266 331 aa22.95■■□□□ 1.26
CLN3-216ENST00000565316 SERPINB2P05120 415 aa22.93■■□□□ 1.26
CLN3-216ENST00000565316 C9orf131Q5VYM1 1079 aa22.93■■□□□ 1.26
CLN3-216ENST00000565316 FMNL2Q96PY5 1086 aa22.93■■□□□ 1.26
CLN3-216ENST00000565316 HSPA6P17066 643 aa22.92■■□□□ 1.26
CLN3-216ENST00000565316 AFDNP55196 1824 aaKnown RBP22.91■■□□□ 1.26
CLN3-216ENST00000565316 BTBD11A6QL63 1104 aa22.9■■□□□ 1.26
CLN3-216ENST00000565316 U2AF1L5P0DN76 240 aaPredicted RBP22.9■■□□□ 1.26
CLN3-216ENST00000565316 IL6STP40189 918 aaPredicted RBP22.9■■□□□ 1.26
CLN3-216ENST00000565316 U2AF1Q01081 240 aaKnown RBP eCLIP22.9■■□□□ 1.26
CLN3-216ENST00000565316 KCNQ3O43525 872 aa22.89■■□□□ 1.26
CLN3-216ENST00000565316 A1BGP04217 495 aa22.87■■□□□ 1.25
CLN3-216ENST00000565316 TBC1D9BQ66K14 1250 aa22.86■■□□□ 1.25
CLN3-216ENST00000565316 NMRK2Q9NPI5 230 aa22.86■■□□□ 1.25
CLN3-216ENST00000565316 TBC1D2BQ9UPU7 963 aa22.86■■□□□ 1.25
CLN3-216ENST00000565316 CARMIL3Q8ND23 1372 aa22.86■■□□□ 1.25
CLN3-216ENST00000565316 HTATSF1O43719 755 aaKnown RBP22.85■■□□□ 1.25
CLN3-216ENST00000565316 TOMM70O94826 608 aa22.85■■□□□ 1.25
CLN3-216ENST00000565316 BICDL1Q6ZP65 573 aa22.85■■□□□ 1.25
CLN3-216ENST00000565316 C2CD5Q86YS7 1000 aa22.85■■□□□ 1.25
CLN3-216ENST00000565316 RNF181Q9P0P0 153 aa22.85■■□□□ 1.25
CLN3-216ENST00000565316 SCN7AQ01118 1682 aa22.85■■□□□ 1.25
CLN3-216ENST00000565316 MCM10Q7L590 875 aa22.84■■□□□ 1.25
CLN3-216ENST00000565316 TTLL6Q8N841 843 aa22.84■■□□□ 1.25
CLN3-216ENST00000565316 RTF1Q92541 710 aaKnown RBP22.84■■□□□ 1.25
CLN3-216ENST00000565316 DLEC1Q9Y238 1755 aa22.84■■□□□ 1.25
CLN3-216ENST00000565316 H0YIN7 160 aa22.83■■□□□ 1.25
CLN3-216ENST00000565316 CAMTA2O94983 1202 aa22.83■■□□□ 1.25
CLN3-216ENST00000565316 ZNF330Q9Y3S2 320 aaPredicted RBP22.83■■□□□ 1.25
CLN3-216ENST00000565316 USP16Q9Y5T5 823 aa22.83■■□□□ 1.25
CLN3-216ENST00000565316 BRIP1Q9BX63 1249 aa22.82■■□□□ 1.24
CLN3-216ENST00000565316 PDZRN3Q9UPQ7 1066 aa22.82■■□□□ 1.24
CLN3-216ENST00000565316 SNRPA1P09661 255 aaKnown RBP22.82■■□□□ 1.24
CLN3-216ENST00000565316 PRR5LQ6MZQ0 368 aa22.82■■□□□ 1.24
CLN3-216ENST00000565316 SBF1O95248 1867 aa22.81■■□□□ 1.24
CLN3-216ENST00000565316 DCTN1Q14203 1278 aa22.81■■□□□ 1.24
CLN3-216ENST00000565316 NPM2Q86SE8 214 aaKnown RBP22.81■■□□□ 1.24
CLN3-216ENST00000565316 KDM2BQ8NHM5 1336 aa22.8■■□□□ 1.24
CLN3-216ENST00000565316 ZC3H4Q9UPT8 1303 aaKnown RBP22.8■■□□□ 1.24
CLN3-216ENST00000565316 PRAMEF22A3QJZ6 481 aa22.8■■□□□ 1.24
CLN3-216ENST00000565316 PDE6BP35913 854 aa22.8■■□□□ 1.24
CLN3-216ENST00000565316 RASSF7Q02833 373 aa22.8■■□□□ 1.24
CLN3-216ENST00000565316 SETDB2Q96T68 719 aa22.8■■□□□ 1.24
CLN3-216ENST00000565316 LMNB1P20700 586 aa22.79■■□□□ 1.24
CLN3-216ENST00000565316 PRELPP51888 382 aa22.79■■□□□ 1.24
CLN3-216ENST00000565316 DZIP3Q86Y13 1208 aaKnown RBP22.79■■□□□ 1.24
CLN3-216ENST00000565316 RBM46Q8TBY0 533 aaKnown RBP22.79■■□□□ 1.24
CLN3-216ENST00000565316 ANKRD31Q8N7Z5 1873 aa22.78■■□□□ 1.24
CLN3-216ENST00000565316 APLP1P51693 650 aa22.78■■□□□ 1.24
CLN3-216ENST00000565316 TAF7Q15545 349 aaPredicted RBP22.78■■□□□ 1.24
CLN3-216ENST00000565316 CLEC4GQ6UXB4 293 aa22.78■■□□□ 1.24
CLN3-216ENST00000565316 NFKBIEO00221 500 aa22.76■■□□□ 1.23
CLN3-216ENST00000565316 RGL2O15211 777 aa22.76■■□□□ 1.23
CLN3-216ENST00000565316 PIP4K2AP48426 406 aaPredicted RBP22.76■■□□□ 1.23
CLN3-216ENST00000565316 CNBD1Q8NA66 436 aa22.76■■□□□ 1.23
CLN3-216ENST00000565316 PLEKHF1Q96S99 279 aa22.76■■□□□ 1.23
CLN3-216ENST00000565316 BCORQ6W2J9 1755 aa22.75■■□□□ 1.23
CLN3-216ENST00000565316 NBPF26B4DH59 902 aa22.75■■□□□ 1.23
CLN3-216ENST00000565316 NBPF10Q6P3W6 841 aaKnown RBP22.75■■□□□ 1.23
CLN3-216ENST00000565316 CCDC24Q8N4L8 307 aa22.75■■□□□ 1.23
CLN3-216ENST00000565316 NBPF15Q8N660 670 aa22.75■■□□□ 1.23
CLN3-216ENST00000565316 ZNF622Q969S3 477 aaKnown RBP eCLIP22.75■■□□□ 1.23
CLN3-216ENST00000565316 RRAGCQ9HB90 399 aa22.74■■□□□ 1.23
CLN3-216ENST00000565316 C16orf71Q8IYS4 520 aaPredicted RBP22.73■■□□□ 1.23
CLN3-216ENST00000565316 ST5P78524 1137 aa22.72■■□□□ 1.23
CLN3-216ENST00000565316 FSTL1Q12841 308 aa22.72■■□□□ 1.23
CLN3-216ENST00000565316 STYK1Q6J9G0 422 aa22.72■■□□□ 1.23
CLN3-216ENST00000565316 MIS18AQ9NYP9 233 aa22.72■■□□□ 1.23
CLN3-216ENST00000565316 ZNF652Q9Y2D9 606 aa22.72■■□□□ 1.23
CLN3-216ENST00000565316 COL11A2P13942 1736 aaPredicted RBP22.72■■□□□ 1.23
CLN3-216ENST00000565316 GLTPD2A6NH11 291 aa22.71■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 72 ms