RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 TGFB2P61812 414 aa19.85■□□□□ 0.77
CLN3-213ENST00000565047 MCM10Q7L590 875 aa19.85■□□□□ 0.77
CLN3-213ENST00000565047 TTC5Q8N0Z6 440 aa19.85■□□□□ 0.77
CLN3-213ENST00000565047 DDX10Q13206 875 aaKnown RBP19.84■□□□□ 0.77
CLN3-213ENST00000565047 DCTN1Q14203 1278 aa19.84■□□□□ 0.77
CLN3-213ENST00000565047 RALBP1Q15311 655 aa19.84■□□□□ 0.77
CLN3-213ENST00000565047 USPL1Q5W0Q7 1092 aa19.84■□□□□ 0.77
CLN3-213ENST00000565047 NARFQ9UHQ1 456 aa19.84■□□□□ 0.77
CLN3-213ENST00000565047 COL15A1P39059 1388 aa19.83■□□□□ 0.77
CLN3-213ENST00000565047 BTBD11A6QL63 1104 aa19.83■□□□□ 0.77
CLN3-213ENST00000565047 KCNA3P22001 575 aa19.83■□□□□ 0.77
CLN3-213ENST00000565047 POLRMTO00411 1230 aaKnown RBP19.82■□□□□ 0.76
CLN3-213ENST00000565047 STARD3NLO95772 234 aa19.82■□□□□ 0.76
CLN3-213ENST00000565047 TEX13AQ9BXU3 409 aaPredicted RBP19.82■□□□□ 0.76
CLN3-213ENST00000565047 PARP3Q9Y6F1 533 aa19.82■□□□□ 0.76
CLN3-213ENST00000565047 FMNL2Q96PY5 1086 aa19.81■□□□□ 0.76
CLN3-213ENST00000565047 A0A0G2JLW4 131 aa19.8■□□□□ 0.76
CLN3-213ENST00000565047 ZPR1O75312 459 aa19.8■□□□□ 0.76
CLN3-213ENST00000565047 CANXP27824 592 aaKnown RBP19.8■□□□□ 0.76
CLN3-213ENST00000565047 RTF1Q92541 710 aaKnown RBP19.8■□□□□ 0.76
CLN3-213ENST00000565047 N4BP2Q86UW6 1770 aaPredicted RBP19.8■□□□□ 0.76
CLN3-213ENST00000565047 PRAMEF22A3QJZ6 481 aa19.79■□□□□ 0.76
CLN3-213ENST00000565047 NFIXQ14938 502 aa19.79■□□□□ 0.76
CLN3-213ENST00000565047 WWC3Q9ULE0 1092 aa19.79■□□□□ 0.76
CLN3-213ENST00000565047 USP16Q9Y5T5 823 aa19.79■□□□□ 0.76
CLN3-213ENST00000565047 A1BGP04217 495 aa19.78■□□□□ 0.76
CLN3-213ENST00000565047 DPEP1P16444 411 aa19.78■□□□□ 0.76
CLN3-213ENST00000565047 NRXN2Q9P2S2 1712 aa19.78■□□□□ 0.76
CLN3-213ENST00000565047 BRCA1P38398 1863 aaKnown RBP19.77■□□□□ 0.76
CLN3-213ENST00000565047 IL6STP40189 918 aaPredicted RBP19.77■□□□□ 0.76
CLN3-213ENST00000565047 TAF7Q15545 349 aaPredicted RBP19.77■□□□□ 0.76
CLN3-213ENST00000565047 NFE2L2Q16236 605 aa19.77■□□□□ 0.76
CLN3-213ENST00000565047 ADCY9O60503 1353 aa19.77■□□□□ 0.76
CLN3-213ENST00000565047 DLG5Q8TDM6 1919 aa19.76■□□□□ 0.75
CLN3-213ENST00000565047 MYBBP1AQ9BQG0 1328 aaKnown RBP19.75■□□□□ 0.75
CLN3-213ENST00000565047 A0A087WZG4 1122 aa19.74■□□□□ 0.75
CLN3-213ENST00000565047 SNRPA1P09661 255 aaKnown RBP19.74■□□□□ 0.75
CLN3-213ENST00000565047 MIS18AQ9NYP9 233 aa19.74■□□□□ 0.75
CLN3-213ENST00000565047 TBC1D2BQ9UPU7 963 aa19.73■□□□□ 0.75
CLN3-213ENST00000565047 AFDNP55196 1824 aaKnown RBP19.73■□□□□ 0.75
CLN3-213ENST00000565047 SCN7AQ01118 1682 aa19.72■□□□□ 0.75
CLN3-213ENST00000565047 NBPF26B4DH59 902 aa19.72■□□□□ 0.75
CLN3-213ENST00000565047 CAMTA2O94983 1202 aa19.72■□□□□ 0.75
CLN3-213ENST00000565047 SERPINB2P05120 415 aa19.72■□□□□ 0.75
CLN3-213ENST00000565047 NBPF10Q6P3W6 841 aaKnown RBP19.72■□□□□ 0.75
CLN3-213ENST00000565047 NBPF15Q8N660 670 aa19.72■□□□□ 0.75
CLN3-213ENST00000565047 THUMPD2Q9BTF0 503 aaKnown RBP19.72■□□□□ 0.75
CLN3-213ENST00000565047 PNNQ9H307 717 aaKnown RBP19.72■□□□□ 0.75
CLN3-213ENST00000565047 KDM3BQ7LBC6 1761 aa19.71■□□□□ 0.75
CLN3-213ENST00000565047 CHRNA5P30532 468 aa19.71■□□□□ 0.75
CLN3-213ENST00000565047 TBC1D9BQ66K14 1250 aa19.71■□□□□ 0.75
CLN3-213ENST00000565047 BCS1LQ9Y276 419 aa19.71■□□□□ 0.75
CLN3-213ENST00000565047 PIP4K2AP48426 406 aaPredicted RBP19.7■□□□□ 0.74
CLN3-213ENST00000565047 NEFMP07197 916 aa19.69■□□□□ 0.74
CLN3-213ENST00000565047 PRKRIP1Q9H875 184 aaPredicted RBP19.69■□□□□ 0.74
CLN3-213ENST00000565047 PIM2Q9P1W9 311 aa19.69■□□□□ 0.74
CLN3-213ENST00000565047 CARMIL3Q8ND23 1372 aa19.69■□□□□ 0.74
CLN3-213ENST00000565047 ATP10DQ9P241 1426 aa19.68■□□□□ 0.74
CLN3-213ENST00000565047 GIGYF1O75420 1035 aaPredicted RBP19.68■□□□□ 0.74
CLN3-213ENST00000565047 EIF4A1P60842 406 aaKnown RBP19.68■□□□□ 0.74
CLN3-213ENST00000565047 PNISRQ8TF01 805 aaKnown RBP19.68■□□□□ 0.74
CLN3-213ENST00000565047 BCORQ6W2J9 1755 aa19.67■□□□□ 0.74
CLN3-213ENST00000565047 ARFGEF1Q9Y6D6 1849 aa19.67■□□□□ 0.74
CLN3-213ENST00000565047 TMPOP42166 694 aaKnown RBP19.67■□□□□ 0.74
CLN3-213ENST00000565047 MAPK8IP3Q9UPT6 1336 aa19.67■□□□□ 0.74
CLN3-213ENST00000565047 BICDL1Q6ZP65 573 aa19.66■□□□□ 0.74
CLN3-213ENST00000565047 DZIP3Q86Y13 1208 aaKnown RBP19.66■□□□□ 0.74
CLN3-213ENST00000565047 ZNF330Q9Y3S2 320 aaPredicted RBP19.66■□□□□ 0.74
CLN3-213ENST00000565047 RIPK4P57078 832 aa19.65■□□□□ 0.74
CLN3-213ENST00000565047 DALRD3Q5D0E6 543 aaKnown RBP19.65■□□□□ 0.74
CLN3-213ENST00000565047 CLEC4GQ6UXB4 293 aa19.65■□□□□ 0.74
CLN3-213ENST00000565047 RGL2O15211 777 aa19.64■□□□□ 0.73
CLN3-213ENST00000565047 C1QTNF8P60827 252 aa19.64■□□□□ 0.73
CLN3-213ENST00000565047 PRR5LQ6MZQ0 368 aa19.64■□□□□ 0.73
CLN3-213ENST00000565047 DLEC1Q9Y238 1755 aa19.64■□□□□ 0.73
CLN3-213ENST00000565047 ANKRD31Q8N7Z5 1873 aa19.63■□□□□ 0.73
CLN3-213ENST00000565047 LAMB4A4D0S4 1761 aa19.63■□□□□ 0.73
CLN3-213ENST00000565047 ARHGAP27Q6ZUM4 889 aa19.63■□□□□ 0.73
CLN3-213ENST00000565047 ADAMTS8Q9UP79 889 aa19.63■□□□□ 0.73
CLN3-213ENST00000565047 BRIP1Q9BX63 1249 aa19.62■□□□□ 0.73
CLN3-213ENST00000565047 BABAM1Q9NWV8 329 aa19.62■□□□□ 0.73
CLN3-213ENST00000565047 TRIM35Q9UPQ4 493 aa19.62■□□□□ 0.73
CLN3-213ENST00000565047 CCDC146Q8IYE0 955 aa19.61■□□□□ 0.73
CLN3-213ENST00000565047 RUNDC1Q96C34 613 aa19.61■□□□□ 0.73
CLN3-213ENST00000565047 SETDB2Q96T68 719 aa19.61■□□□□ 0.73
CLN3-213ENST00000565047 HLFQ16534 295 aa19.6■□□□□ 0.73
CLN3-213ENST00000565047 LRP10Q7Z4F1 713 aa19.6■□□□□ 0.73
CLN3-213ENST00000565047 C2CD5Q86YS7 1000 aa19.6■□□□□ 0.73
CLN3-213ENST00000565047 RRP7AQ9Y3A4 280 aaKnown RBP19.6■□□□□ 0.73
CLN3-213ENST00000565047 CCDC24Q8N4L8 307 aa19.59■□□□□ 0.73
CLN3-213ENST00000565047 ZEB1P37275 1124 aaPredicted RBP19.58■□□□□ 0.72
CLN3-213ENST00000565047 PRELPP51888 382 aa19.58■□□□□ 0.72
CLN3-213ENST00000565047 PDIA6Q15084 440 aa19.58■□□□□ 0.72
CLN3-213ENST00000565047 NPM2Q86SE8 214 aaKnown RBP19.58■□□□□ 0.72
CLN3-213ENST00000565047 TSPYL4Q9UJ04 414 aa19.58■□□□□ 0.72
CLN3-213ENST00000565047 COL11A2P13942 1736 aaPredicted RBP19.57■□□□□ 0.72
CLN3-213ENST00000565047 H0YIN7 160 aa19.57■□□□□ 0.72
CLN3-213ENST00000565047 CHL1O00533 1208 aa19.57■□□□□ 0.72
CLN3-213ENST00000565047 PDE6BP35913 854 aa19.57■□□□□ 0.72
CLN3-213ENST00000565047 TTLL6Q8N841 843 aa19.57■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 106.7 ms