RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 SPG7Q9UQ90 795 aa16.44■□□□□ 0.22
CLK3-215ENST00000564353 IBTKQ9P2D0 1353 aaPredicted RBP16.43■□□□□ 0.22
CLK3-215ENST00000564353 SALL3Q9BXA9 1300 aa16.43■□□□□ 0.22
CLK3-215ENST00000564353 AIMP1Q12904 312 aaKnown RBP16.43■□□□□ 0.22
CLK3-215ENST00000564353 ZNF530Q6P9A1 599 aaPredicted RBP16.43■□□□□ 0.22
CLK3-215ENST00000564353 OSBPL3Q9H4L5 887 aa16.43■□□□□ 0.22
CLK3-215ENST00000564353 PA2G4Q9UQ80 394 aaKnown RBP16.43■□□□□ 0.22
CLK3-215ENST00000564353 RGPD1P0DJD0 1748 aa16.43■□□□□ 0.22
CLK3-215ENST00000564353 TEFQ10587 303 aa16.43■□□□□ 0.22
CLK3-215ENST00000564353 CWC27Q6UX04 472 aaKnown RBP16.43■□□□□ 0.22
CLK3-215ENST00000564353 ORAI2Q96SN7 254 aa16.43■□□□□ 0.22
CLK3-215ENST00000564353 BTBD11A6QL63 1104 aa16.42■□□□□ 0.22
CLK3-215ENST00000564353 ESPNB1AK53 854 aa16.42■□□□□ 0.22
CLK3-215ENST00000564353 CYP2E1P05181 493 aaPredicted RBP16.42■□□□□ 0.22
CLK3-215ENST00000564353 PRIM1P49642 420 aaKnown RBP16.42■□□□□ 0.22
CLK3-215ENST00000564353 RNF214Q8ND24 703 aa16.42■□□□□ 0.22
CLK3-215ENST00000564353 TOPAZ1Q8N9V7 1692 aa16.42■□□□□ 0.22
CLK3-215ENST00000564353 CWF19L2Q2TBE0 894 aaKnown RBP16.42■□□□□ 0.22
CLK3-215ENST00000564353 PIK3C2AO00443 1686 aa16.42■□□□□ 0.22
CLK3-215ENST00000564353 SYCE3A1L190 88 aa16.41■□□□□ 0.22
CLK3-215ENST00000564353 EIF4A1P60842 406 aaKnown RBP16.41■□□□□ 0.22
CLK3-215ENST00000564353 ANKLE2Q86XL3 938 aa16.41■□□□□ 0.22
CLK3-215ENST00000564353 RHPN1Q8TCX5 695 aa16.41■□□□□ 0.22
CLK3-215ENST00000564353 PIP4K2AP48426 406 aaPredicted RBP16.41■□□□□ 0.22
CLK3-215ENST00000564353 RBSNQ9H1K0 784 aa16.41■□□□□ 0.22
CLK3-215ENST00000564353 JARID2Q92833 1246 aaPredicted RBP16.4■□□□□ 0.22
CLK3-215ENST00000564353 MPNDQ8N594 471 aa16.4■□□□□ 0.22
CLK3-215ENST00000564353 TMEM63CQ9P1W3 806 aa16.4■□□□□ 0.22
CLK3-215ENST00000564353 MCCP23508 829 aa16.39■□□□□ 0.21
CLK3-215ENST00000564353 DNAAF4Q8WXU2 420 aa16.39■□□□□ 0.21
CLK3-215ENST00000564353 BCL11BQ9C0K0 894 aaPredicted RBP16.39■□□□□ 0.21
CLK3-215ENST00000564353 NALCNQ8IZF0 1738 aa16.39■□□□□ 0.21
CLK3-215ENST00000564353 HTATSF1O43719 755 aaKnown RBP16.38■□□□□ 0.21
CLK3-215ENST00000564353 SSH3Q8TE77 659 aa16.38■□□□□ 0.21
CLK3-215ENST00000564353 CWC22Q9HCG8 908 aaKnown RBP16.38■□□□□ 0.21
CLK3-215ENST00000564353 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.38■□□□□ 0.21
CLK3-215ENST00000564353 SLC39A6Q13433 755 aa16.37■□□□□ 0.21
CLK3-215ENST00000564353 RASEFQ8IZ41 740 aa16.37■□□□□ 0.21
CLK3-215ENST00000564353 IP6K1Q92551 441 aa16.37■□□□□ 0.21
CLK3-215ENST00000564353 SIL1Q9H173 461 aa16.37■□□□□ 0.21
CLK3-215ENST00000564353 MAP3K2Q9Y2U5 619 aa16.37■□□□□ 0.21
CLK3-215ENST00000564353 BEND3Q5T5X7 828 aa16.37■□□□□ 0.21
CLK3-215ENST00000564353 KLHDC4Q8TBB5 520 aa16.37■□□□□ 0.21
CLK3-215ENST00000564353 C9orf78Q9NZ63 289 aaPredicted RBP16.37■□□□□ 0.21
CLK3-215ENST00000564353 PDIA4P13667 645 aaKnown RBP16.37■□□□□ 0.21
CLK3-215ENST00000564353 CLCN1P35523 988 aa16.37■□□□□ 0.21
CLK3-215ENST00000564353 ZC3H6P61129 1189 aaKnown RBP16.37■□□□□ 0.21
CLK3-215ENST00000564353 PI4K2BQ8TCG2 481 aa16.37■□□□□ 0.21
CLK3-215ENST00000564353 DDX17Q92841 729 aaKnown RBP16.37■□□□□ 0.21
CLK3-215ENST00000564353 AXIN2Q9Y2T1 843 aa16.36■□□□□ 0.21
CLK3-215ENST00000564353 NWD1Q149M9 1564 aa16.36■□□□□ 0.21
CLK3-215ENST00000564353 GADD45BO75293 160 aaPredicted RBP16.36■□□□□ 0.21
CLK3-215ENST00000564353 FMN2Q9NZ56 1722 aa16.35■□□□□ 0.21
CLK3-215ENST00000564353 MYL6BP14649 208 aa16.35■□□□□ 0.21
CLK3-215ENST00000564353 CLEC17AQ6ZS10 378 aa16.35■□□□□ 0.21
CLK3-215ENST00000564353 CCDC9Q9Y3X0 531 aaKnown RBP16.35■□□□□ 0.21
CLK3-215ENST00000564353 ANP32BQ92688 251 aaKnown RBP16.35■□□□□ 0.21
CLK3-215ENST00000564353 STAP2Q9UGK3 403 aa16.34■□□□□ 0.21
CLK3-215ENST00000564353 PTMSP20962 102 aa16.34■□□□□ 0.21
CLK3-215ENST00000564353 COL9A3Q14050 684 aaPredicted RBP16.34■□□□□ 0.21
CLK3-215ENST00000564353 C1orf141Q5JVX7 400 aa16.34■□□□□ 0.21
CLK3-215ENST00000564353 GCP02774 474 aa16.33■□□□□ 0.21
CLK3-215ENST00000564353 CCDC8Q9H0W5 538 aaPredicted RBP16.33■□□□□ 0.21
CLK3-215ENST00000564353 KIF1BPQ96EK5 621 aa16.33■□□□□ 0.2
CLK3-215ENST00000564353 ADCY9O60503 1353 aa16.33■□□□□ 0.2
CLK3-215ENST00000564353 ANKRD24Q8TF21 1146 aa16.32■□□□□ 0.2
CLK3-215ENST00000564353 TCEANC2Q96MN5 208 aa16.32■□□□□ 0.2
CLK3-215ENST00000564353 PTH1RQ03431 593 aa16.32■□□□□ 0.2
CLK3-215ENST00000564353 POLA2Q14181 598 aa16.32■□□□□ 0.2
CLK3-215ENST00000564353 SNX14Q9Y5W7 946 aa16.32■□□□□ 0.2
CLK3-215ENST00000564353 NDUFB9Q9Y6M9 179 aa16.32■□□□□ 0.2
CLK3-215ENST00000564353 LARGE1O95461 756 aa16.32■□□□□ 0.2
CLK3-215ENST00000564353 BRD1O95696 1058 aa16.32■□□□□ 0.2
CLK3-215ENST00000564353 CASTP20810 708 aaKnown RBP16.31■□□□□ 0.2
CLK3-215ENST00000564353 AK2P54819 239 aa16.31■□□□□ 0.2
CLK3-215ENST00000564353 ADCK5Q3MIX3 580 aa16.31■□□□□ 0.2
CLK3-215ENST00000564353 ISY1Q9ULR0 285 aaKnown RBP16.31■□□□□ 0.2
CLK3-215ENST00000564353 SGSM2O43147 1006 aa16.31■□□□□ 0.2
CLK3-215ENST00000564353 RNMTO43148 476 aaKnown RBP16.31■□□□□ 0.2
CLK3-215ENST00000564353 HSPA4P34932 840 aa16.31■□□□□ 0.2
CLK3-215ENST00000564353 PLEKHO1Q53GL0 409 aaPredicted RBP16.31■□□□□ 0.2
CLK3-215ENST00000564353 PRPF40BQ6NWY9 871 aaKnown RBP16.31■□□□□ 0.2
CLK3-215ENST00000564353 KIAA1211Q6ZU35 1233 aa16.31■□□□□ 0.2
CLK3-215ENST00000564353 AACSQ86V21 672 aa16.31■□□□□ 0.2
CLK3-215ENST00000564353 CNTROBQ8N137 903 aa16.31■□□□□ 0.2
CLK3-215ENST00000564353 TLR7Q9NYK1 1049 aaKnown RBP16.31■□□□□ 0.2
CLK3-215ENST00000564353 CCDC173Q0VFZ6 552 aa16.3■□□□□ 0.2
CLK3-215ENST00000564353 DIAPH3Q9NSV4 1193 aa16.3■□□□□ 0.2
CLK3-215ENST00000564353 PXDNQ92626 1479 aa16.3■□□□□ 0.2
CLK3-215ENST00000564353 ZNF445P59923 1031 aa16.3■□□□□ 0.2
CLK3-215ENST00000564353 AKAP4Q5JQC9 854 aa16.3■□□□□ 0.2
CLK3-215ENST00000564353 CEMIPQ8WUJ3 1361 aa16.3■□□□□ 0.2
CLK3-215ENST00000564353 XRN1Q8IZH2 1706 aaKnown RBP16.3■□□□□ 0.2
CLK3-215ENST00000564353 IFIT2P09913 472 aaKnown RBP16.29■□□□□ 0.2
CLK3-215ENST00000564353 EDC3Q96F86 508 aaKnown RBP16.29■□□□□ 0.2
CLK3-215ENST00000564353 CNPY2Q9Y2B0 182 aa16.29■□□□□ 0.2
CLK3-215ENST00000564353 GIGYF1O75420 1035 aaPredicted RBP16.29■□□□□ 0.2
CLK3-215ENST00000564353 CUL4AQ13619 759 aa16.29■□□□□ 0.2
CLK3-215ENST00000564353 HSP90AA2PQ14568 343 aaPredicted RBP16.29■□□□□ 0.2
CLK3-215ENST00000564353 USP48Q86UV5 1035 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms