RNA–Protein interactions for RNA: ENST00000564228.5

TCF4-222, Transcript of transcription factor 4, human

TSL 1 (best) BASIC

Gene TCF4, Length 1,915 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TCF4-222	ENST00000564228	DDX49	Q9Y6V7	483 aa	Known RBP	13.57	□□□□□ -0.24
TCF4-222	ENST00000564228	CRB1	P82279	1406 aa		13.57	□□□□□ -0.24
TCF4-222	ENST00000564228	PKD1L3	Q7Z443	1732 aa		13.57	□□□□□ -0.24
TCF4-222	ENST00000564228	NWD2	Q9ULI1	1742 aa		13.57	□□□□□ -0.24
TCF4-222	ENST00000564228	C1orf141	Q5JVX7	400 aa		13.56	□□□□□ -0.24
TCF4-222	ENST00000564228	CARD10	Q9BWT7	1032 aa		13.56	□□□□□ -0.24
TCF4-222	ENST00000564228		A0A0U1RQG5	324 aa	Predicted RBP	13.56	□□□□□ -0.24
TCF4-222	ENST00000564228	BAG4	O95429	457 aa	Known RBP	13.56	□□□□□ -0.24
TCF4-222	ENST00000564228	CCDC39	Q9UFE4	941 aa		13.56	□□□□□ -0.24
TCF4-222	ENST00000564228	LRRC37A3	O60309	1634 aa		13.55	□□□□□ -0.24
TCF4-222	ENST00000564228	ZKSCAN2	Q63HK3	967 aa		13.55	□□□□□ -0.24
TCF4-222	ENST00000564228	C8orf37	Q96NL8	207 aa		13.55	□□□□□ -0.24
TCF4-222	ENST00000564228	GTPBP4	Q9BZE4	634 aa	Known RBP	13.55	□□□□□ -0.24
TCF4-222	ENST00000564228	SPATA31A6	Q5VVP1	1343 aa		13.55	□□□□□ -0.24
TCF4-222	ENST00000564228	GNAI1	P63096	354 aa		13.54	□□□□□ -0.24
TCF4-222	ENST00000564228	AKAP4	Q5JQC9	854 aa		13.54	□□□□□ -0.24
TCF4-222	ENST00000564228	DZIP1L	Q8IYY4	767 aa	Known RBP	13.54	□□□□□ -0.24
TCF4-222	ENST00000564228	IFT57	Q9NWB7	429 aa		13.54	□□□□□ -0.24
TCF4-222	ENST00000564228	SPG7	Q9UQ90	795 aa		13.54	□□□□□ -0.24
TCF4-222	ENST00000564228	LRP6	O75581	1613 aa		13.54	□□□□□ -0.24
TCF4-222	ENST00000564228	WNK3	Q9BYP7	1800 aa		13.54	□□□□□ -0.24
TCF4-222	ENST00000564228	HTATSF1	O43719	755 aa	Known RBP	13.54	□□□□□ -0.24
TCF4-222	ENST00000564228	CFAP44	Q96MT7	982 aa		13.54	□□□□□ -0.24
TCF4-222	ENST00000564228	KIF2C	Q99661	725 aa		13.54	□□□□□ -0.24
TCF4-222	ENST00000564228	TNN	Q9UQP3	1299 aa		13.54	□□□□□ -0.24
TCF4-222	ENST00000564228	OVOS2	A0A0G2JMS6	1433 aa		13.54	□□□□□ -0.24
TCF4-222	ENST00000564228	KAT6B	Q8WYB5	2073 aa		13.53	□□□□□ -0.24
TCF4-222	ENST00000564228	KIF20A	O95235	890 aa		13.53	□□□□□ -0.24
TCF4-222	ENST00000564228	IL2RB	P14784	551 aa		13.53	□□□□□ -0.24
TCF4-222	ENST00000564228	ZSCAN20	P17040	1043 aa	Predicted RBP	13.53	□□□□□ -0.24
TCF4-222	ENST00000564228	SSFA2	P28290	1259 aa		13.53	□□□□□ -0.24
TCF4-222	ENST00000564228	IL17RE	Q8NFR9	667 aa		13.53	□□□□□ -0.24
TCF4-222	ENST00000564228	NGLY1	Q96IV0	654 aa		13.53	□□□□□ -0.24
TCF4-222	ENST00000564228	MBIP	Q9NS73	344 aa		13.53	□□□□□ -0.24
TCF4-222	ENST00000564228	DDX19B	Q9UMR2	479 aa		13.53	□□□□□ -0.24
TCF4-222	ENST00000564228	SCN11A	Q9UI33	1791 aa		13.53	□□□□□ -0.24
TCF4-222	ENST00000564228	SHANK3	Q9BYB0	1731 aa		13.53	□□□□□ -0.24
TCF4-222	ENST00000564228	NUCB2	P80303	420 aa		13.52	□□□□□ -0.24
TCF4-222	ENST00000564228	EXOSC9	Q06265	439 aa	Known RBP	13.52	□□□□□ -0.24
TCF4-222	ENST00000564228	ZSCAN23	Q3MJ62	389 aa		13.52	□□□□□ -0.24
TCF4-222	ENST00000564228	BMP2KL	Q5H9B9	411 aa		13.52	□□□□□ -0.24
TCF4-222	ENST00000564228	MPRIP	Q6WCQ1	1025 aa		13.52	□□□□□ -0.24
TCF4-222	ENST00000564228	SLIT2	O94813	1529 aa		13.52	□□□□□ -0.24
TCF4-222	ENST00000564228	ZNF853	P0CG23	659 aa		13.52	□□□□□ -0.25
TCF4-222	ENST00000564228	MEX3C	Q5U5Q3	659 aa	Known RBP	13.52	□□□□□ -0.25
TCF4-222	ENST00000564228	FTSJ3	Q8IY81	847 aa	Known RBP	13.52	□□□□□ -0.25
TCF4-222	ENST00000564228	LGR6	Q9HBX8	967 aa		13.52	□□□□□ -0.25
TCF4-222	ENST00000564228	CCDC9	Q9Y3X0	531 aa	Known RBP	13.52	□□□□□ -0.25
TCF4-222	ENST00000564228	NUCB1	Q02818	461 aa		13.51	□□□□□ -0.25
TCF4-222	ENST00000564228	AK9	Q5TCS8	1911 aa		13.51	□□□□□ -0.25
TCF4-222	ENST00000564228	MYRIP	Q8NFW9	859 aa		13.51	□□□□□ -0.25
TCF4-222	ENST00000564228	RBSN	Q9H1K0	784 aa		13.51	□□□□□ -0.25
TCF4-222	ENST00000564228	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	13.51	□□□□□ -0.25
TCF4-222	ENST00000564228	MIS18A	Q9NYP9	233 aa		13.51	□□□□□ -0.25
TCF4-222	ENST00000564228	PRIMPOL	Q96LW4	560 aa		13.51	□□□□□ -0.25
TCF4-222	ENST00000564228	LETM1	O95202	739 aa	Predicted RBP	13.5	□□□□□ -0.25
TCF4-222	ENST00000564228	PHKG2	P15735	406 aa		13.5	□□□□□ -0.25
TCF4-222	ENST00000564228	IFNL2	Q8IZJ0	200 aa		13.5	□□□□□ -0.25
TCF4-222	ENST00000564228	ZCRB1	Q8TBF4	217 aa	Known RBP	13.5	□□□□□ -0.25
TCF4-222	ENST00000564228	CEMIP	Q8WUJ3	1361 aa		13.49	□□□□□ -0.25
TCF4-222	ENST00000564228	PLEKHG2	Q9H7P9	1386 aa		13.49	□□□□□ -0.25
TCF4-222	ENST00000564228	SIPA1L3	O60292	1781 aa	Predicted RBP	13.49	□□□□□ -0.25
TCF4-222	ENST00000564228	CHL1	O00533	1208 aa		13.49	□□□□□ -0.25
TCF4-222	ENST00000564228	CYP27B1	O15528	508 aa		13.49	□□□□□ -0.25
TCF4-222	ENST00000564228	RNMT	O43148	476 aa	Known RBP	13.49	□□□□□ -0.25
TCF4-222	ENST00000564228	CYP2E1	P05181	493 aa	Predicted RBP	13.49	□□□□□ -0.25
TCF4-222	ENST00000564228	GTF2F1	P35269	517 aa	Known RBP eCLIP	13.49	□□□□□ -0.25
TCF4-222	ENST00000564228	LMBRD1	Q9NUN5	540 aa		13.49	□□□□□ -0.25
TCF4-222	ENST00000564228	TSPYL4	Q9UJ04	414 aa		13.49	□□□□□ -0.25
TCF4-222	ENST00000564228	ZHX1	Q9UKY1	873 aa	Predicted RBP	13.49	□□□□□ -0.25
TCF4-222	ENST00000564228	ADAMTS7	Q9UKP4	1686 aa		13.49	□□□□□ -0.25
TCF4-222	ENST00000564228	PCDH11X	Q9BZA7	1347 aa		13.49	□□□□□ -0.25
TCF4-222	ENST00000564228	PCDH11Y	Q9BZA8	1340 aa		13.49	□□□□□ -0.25
TCF4-222	ENST00000564228	ELL2	O00472	640 aa	Predicted RBP	13.49	□□□□□ -0.25
TCF4-222	ENST00000564228	HMGN5	P82970	282 aa	Known RBP	13.49	□□□□□ -0.25
TCF4-222	ENST00000564228	TEF	Q10587	303 aa		13.49	□□□□□ -0.25
TCF4-222	ENST00000564228	UNC5CL	Q8IV45	518 aa		13.49	□□□□□ -0.25
TCF4-222	ENST00000564228	SPATA31A1	Q5TZJ5	1347 aa		13.48	□□□□□ -0.25
TCF4-222	ENST00000564228	TAF7	Q15545	349 aa	Predicted RBP	13.48	□□□□□ -0.25
TCF4-222	ENST00000564228	CAVIN1	Q6NZI2	390 aa	Known RBP	13.48	□□□□□ -0.25
TCF4-222	ENST00000564228	DDX54	Q8TDD1	881 aa	Known RBP	13.48	□□□□□ -0.25
TCF4-222	ENST00000564228	BCL2L13	Q9BXK5	485 aa		13.48	□□□□□ -0.25
TCF4-222	ENST00000564228	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	13.48	□□□□□ -0.25
TCF4-222	ENST00000564228	BCL9L	Q86UU0	1499 aa		13.48	□□□□□ -0.25
TCF4-222	ENST00000564228	KDM3B	Q7LBC6	1761 aa		13.47	□□□□□ -0.25
TCF4-222	ENST00000564228	CD2BP2	O95400	341 aa	Known RBP	13.47	□□□□□ -0.25
TCF4-222	ENST00000564228	KIAA2012	Q0VF49	1180 aa		13.47	□□□□□ -0.25
TCF4-222	ENST00000564228	TSPYL6	Q8N831	410 aa		13.47	□□□□□ -0.25
TCF4-222	ENST00000564228	KDM6A	O15550	1401 aa	Predicted RBP	13.47	□□□□□ -0.25
TCF4-222	ENST00000564228	SPATA31A5	Q5VU36	1347 aa		13.47	□□□□□ -0.25
TCF4-222	ENST00000564228	SPATA31A7	Q8IWB4	1347 aa		13.47	□□□□□ -0.25
TCF4-222	ENST00000564228	KRT24	Q2M2I5	525 aa		13.47	□□□□□ -0.25
TCF4-222	ENST00000564228	LRSAM1	Q6UWE0	723 aa		13.47	□□□□□ -0.25
TCF4-222	ENST00000564228	PRDM10	Q9NQV6	1147 aa		13.47	□□□□□ -0.25
TCF4-222	ENST00000564228	USP21	Q9UK80	565 aa		13.47	□□□□□ -0.25
TCF4-222	ENST00000564228	DISP2	A7MBM2	1401 aa		13.46	□□□□□ -0.25
TCF4-222	ENST00000564228	TAF3	Q5VWG9	929 aa		13.46	□□□□□ -0.25
TCF4-222	ENST00000564228	FNBP4	Q8N3X1	1017 aa	Predicted RBP	13.46	□□□□□ -0.25
TCF4-222	ENST00000564228	C8orf58	Q8NAV2	365 aa		13.46	□□□□□ -0.25
TCF4-222	ENST00000564228	CWC22	Q9HCG8	908 aa	Known RBP	13.46	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms