RNA–Protein interactions for RNA: ENST00000562662.1

VPS39-206, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 526 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-206ENST00000562662 PTPRCP08575 1304 aa17.32■□□□□ 0.36
VPS39-206ENST00000562662 CLUAP1Q96AJ1 413 aa17.32■□□□□ 0.36
VPS39-206ENST00000562662 CHPF2Q9P2E5 772 aa17.32■□□□□ 0.36
VPS39-206ENST00000562662 RGS17Q9UGC6 210 aaPredicted RBP17.32■□□□□ 0.36
VPS39-206ENST00000562662 ZNF831Q5JPB2 1677 aa17.32■□□□□ 0.36
VPS39-206ENST00000562662 ABCC4O15439 1325 aa17.31■□□□□ 0.36
VPS39-206ENST00000562662 API5Q9BZZ5 524 aaKnown RBP17.31■□□□□ 0.36
VPS39-206ENST00000562662 USP16Q9Y5T5 823 aa17.31■□□□□ 0.36
VPS39-206ENST00000562662 KCNQ2O43526 872 aa17.3■□□□□ 0.36
VPS39-206ENST00000562662 PTCD1O75127 700 aaKnown RBP17.3■□□□□ 0.36
VPS39-206ENST00000562662 FLIIQ13045 1269 aa17.3■□□□□ 0.36
VPS39-206ENST00000562662 FTSJ3Q8IY81 847 aaKnown RBP17.3■□□□□ 0.36
VPS39-206ENST00000562662 COG6Q9Y2V7 657 aa17.3■□□□□ 0.36
VPS39-206ENST00000562662 PDIA6Q15084 440 aa17.29■□□□□ 0.36
VPS39-206ENST00000562662 FAM182BQ5T319 152 aa17.29■□□□□ 0.36
VPS39-206ENST00000562662 VSIG10Q8N0Z9 540 aa17.29■□□□□ 0.36
VPS39-206ENST00000562662 PPP4R2Q9NY27 417 aa17.29■□□□□ 0.36
VPS39-206ENST00000562662 DBF4Q9UBU7 674 aaPredicted RBP17.29■□□□□ 0.36
VPS39-206ENST00000562662 COL5A3P25940 1745 aaPredicted RBP17.29■□□□□ 0.36
VPS39-206ENST00000562662 LY75O60449 1722 aa17.28■□□□□ 0.36
VPS39-206ENST00000562662 ANXA1P04083 346 aa17.28■□□□□ 0.36
VPS39-206ENST00000562662 MVPQ14764 893 aaKnown RBP17.28■□□□□ 0.36
VPS39-206ENST00000562662 PROSER3Q2NL68 480 aa17.28■□□□□ 0.36
VPS39-206ENST00000562662 TMEM57Q8N5G2 664 aa17.28■□□□□ 0.36
VPS39-206ENST00000562662 SLC4A9Q96Q91 983 aa17.28■□□□□ 0.36
VPS39-206ENST00000562662 PHAXQ9H814 394 aaKnown RBP17.28■□□□□ 0.36
VPS39-206ENST00000562662 DDX21Q9NR30 783 aaKnown RBP eCLIP17.28■□□□□ 0.36
VPS39-206ENST00000562662 RREB1Q92766 1687 aa17.27■□□□□ 0.36
VPS39-206ENST00000562662 ERBB4Q15303 1308 aa17.26■□□□□ 0.35
VPS39-206ENST00000562662 PXDNLA1KZ92 1463 aa17.26■□□□□ 0.35
VPS39-206ENST00000562662 RXRBP28702 533 aa17.26■□□□□ 0.35
VPS39-206ENST00000562662 KRT27Q7Z3Y8 459 aa17.26■□□□□ 0.35
VPS39-206ENST00000562662 LRP10Q7Z4F1 713 aa17.26■□□□□ 0.35
VPS39-206ENST00000562662 RBM42Q9BTD8 480 aaKnown RBP17.26■□□□□ 0.35
VPS39-206ENST00000562662 HYPKQ9NX55 129 aa17.26■□□□□ 0.35
VPS39-206ENST00000562662 PALLDQ8WX93 1383 aa17.26■□□□□ 0.35
VPS39-206ENST00000562662 POTEAQ6S8J7 498 aa17.25■□□□□ 0.35
VPS39-206ENST00000562662 PTF1AQ7RTS3 328 aa17.25■□□□□ 0.35
VPS39-206ENST00000562662 DNAJC10Q8IXB1 793 aa17.25■□□□□ 0.35
VPS39-206ENST00000562662 TEX13AQ9BXU3 409 aaPredicted RBP17.25■□□□□ 0.35
VPS39-206ENST00000562662 ARFGEF2Q9Y6D5 1785 aa17.25■□□□□ 0.35
VPS39-206ENST00000562662 NUP188Q5SRE5 1749 aa17.24■□□□□ 0.35
VPS39-206ENST00000562662 MYH14Q7Z406 1995 aaKnown RBP17.24■□□□□ 0.35
VPS39-206ENST00000562662 FKBP5Q13451 457 aaPredicted RBP17.24■□□□□ 0.35
VPS39-206ENST00000562662 ITPRIPQ8IWB1 547 aa17.24■□□□□ 0.35
VPS39-206ENST00000562662 SMARCC1Q92922 1105 aaPredicted RBP17.24■□□□□ 0.35
VPS39-206ENST00000562662 TAF1LQ8IZX4 1826 aa17.24■□□□□ 0.35
VPS39-206ENST00000562662 NBPF26B4DH59 902 aa17.23■□□□□ 0.35
VPS39-206ENST00000562662 F6X3S4 739 aa17.23■□□□□ 0.35
VPS39-206ENST00000562662 NBPF14Q5TI25 921 aa17.23■□□□□ 0.35
VPS39-206ENST00000562662 INTS3Q68E01 1043 aaKnown RBP17.23■□□□□ 0.35
VPS39-206ENST00000562662 NBPF10Q6P3W6 841 aaKnown RBP17.23■□□□□ 0.35
VPS39-206ENST00000562662 NBPF15Q8N660 670 aa17.23■□□□□ 0.35
VPS39-206ENST00000562662 DDX19BQ9UMR2 479 aa17.23■□□□□ 0.35
VPS39-206ENST00000562662 ADCY9O60503 1353 aa17.23■□□□□ 0.35
VPS39-206ENST00000562662 MYL6BP14649 208 aa17.22■□□□□ 0.35
VPS39-206ENST00000562662 PIP4K2AP48426 406 aaPredicted RBP17.22■□□□□ 0.35
VPS39-206ENST00000562662 FAM196AQ6ZSG2 479 aa17.22■□□□□ 0.35
VPS39-206ENST00000562662 EP400Q96L91 3159 aa17.21■□□□□ 0.35
VPS39-206ENST00000562662 LOC102724428A0A0B4J2F2 783 aa17.21■□□□□ 0.35
VPS39-206ENST00000562662 A1BGP04217 495 aa17.21■□□□□ 0.35
VPS39-206ENST00000562662 SIK1P57059 783 aa17.21■□□□□ 0.35
VPS39-206ENST00000562662 AFDNP55196 1824 aaKnown RBP17.2■□□□□ 0.34
VPS39-206ENST00000562662 CYP19A1P11511 503 aaPredicted RBP17.2■□□□□ 0.34
VPS39-206ENST00000562662 AAMPQ13685 434 aa17.2■□□□□ 0.34
VPS39-206ENST00000562662 B4GALNT3Q6L9W6 998 aa17.2■□□□□ 0.34
VPS39-206ENST00000562662 XAGE3Q8WTP9 111 aa17.2■□□□□ 0.34
VPS39-206ENST00000562662 BCL11BQ9C0K0 894 aaPredicted RBP17.2■□□□□ 0.34
VPS39-206ENST00000562662 ATP10DQ9P241 1426 aa17.2■□□□□ 0.34
VPS39-206ENST00000562662 PI4KAP2A4QPH2 592 aa17.19■□□□□ 0.34
VPS39-206ENST00000562662 STARD3NLO95772 234 aa17.19■□□□□ 0.34
VPS39-206ENST00000562662 ATP6V1AP38606 617 aa17.19■□□□□ 0.34
VPS39-206ENST00000562662 CCT4P50991 539 aaKnown RBP17.19■□□□□ 0.34
VPS39-206ENST00000562662 ITPK1Q13572 414 aa17.19■□□□□ 0.34
VPS39-206ENST00000562662 PI4KAP1Q8N8J0 262 aa17.19■□□□□ 0.34
VPS39-206ENST00000562662 ZBTB7BO15156 539 aaPredicted RBP17.18■□□□□ 0.34
VPS39-206ENST00000562662 AIMP1Q12904 312 aaKnown RBP17.18■□□□□ 0.34
VPS39-206ENST00000562662 SLC4A10Q6U841 1118 aa17.18■□□□□ 0.34
VPS39-206ENST00000562662 KSR2Q6VAB6 950 aa17.18■□□□□ 0.34
VPS39-206ENST00000562662 COPS6Q7L5N1 327 aa17.18■□□□□ 0.34
VPS39-206ENST00000562662 DNAAF4Q8WXU2 420 aa17.18■□□□□ 0.34
VPS39-206ENST00000562662 TNS1Q9HBL0 1735 aaKnown RBP17.18■□□□□ 0.34
VPS39-206ENST00000562662 DDX58O95786 925 aaKnown RBP17.17■□□□□ 0.34
VPS39-206ENST00000562662 CCDC136Q96JN2 1154 aa17.17■□□□□ 0.34
VPS39-206ENST00000562662 ZBTB40Q9NUA8 1239 aa17.17■□□□□ 0.34
VPS39-206ENST00000562662 ZBTB1Q9Y2K1 713 aa17.16■□□□□ 0.34
VPS39-206ENST00000562662 MAP3K2Q9Y2U5 619 aa17.16■□□□□ 0.34
VPS39-206ENST00000562662 ANKRD36CQ5JPF3 1778 aa17.15■□□□□ 0.34
VPS39-206ENST00000562662 NUP98P52948 1817 aa17.15■□□□□ 0.34
VPS39-206ENST00000562662 BEND3Q5T5X7 828 aa17.15■□□□□ 0.34
VPS39-206ENST00000562662 ILDR1Q86SU0 546 aaPredicted RBP17.15■□□□□ 0.34
VPS39-206ENST00000562662 CHMP4BQ9H444 224 aaKnown RBP17.15■□□□□ 0.34
VPS39-206ENST00000562662 INTS5Q6P9B9 1019 aaKnown RBP17.14■□□□□ 0.33
VPS39-206ENST00000562662 TTLL7Q6ZT98 887 aa17.14■□□□□ 0.33
VPS39-206ENST00000562662 ANKRD13DQ6ZTN6 518 aa17.14■□□□□ 0.33
VPS39-206ENST00000562662 LINC00116Q8NCU8 138 aa17.14■□□□□ 0.33
VPS39-206ENST00000562662 PCDHB15Q9Y5E8 787 aa17.14■□□□□ 0.33
VPS39-206ENST00000562662 BCORQ6W2J9 1755 aa17.13■□□□□ 0.33
VPS39-206ENST00000562662 TRIM37O94972 964 aa17.13■□□□□ 0.33
VPS39-206ENST00000562662 CRKLP46109 303 aaKnown RBP17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms