RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 PSMA6P60900 246 aaKnown RBP6.55□□□□□ -1.36
VPS35-203ENST00000562420 POU4F2Q12837 409 aa6.55□□□□□ -1.36
VPS35-203ENST00000562420 LBRQ14739 615 aaKnown RBP6.55□□□□□ -1.36
VPS35-203ENST00000562420 TEAD4Q15561 434 aa6.55□□□□□ -1.36
VPS35-203ENST00000562420 C4orf17Q53FE4 359 aa6.55□□□□□ -1.36
VPS35-203ENST00000562420 KCTD17Q8N5Z5 321 aa6.55□□□□□ -1.36
VPS35-203ENST00000562420 CCDC155Q8N6L0 562 aa6.55□□□□□ -1.36
VPS35-203ENST00000562420 NANOS1Q8WY41 292 aaKnown RBP6.55□□□□□ -1.36
VPS35-203ENST00000562420 ZDHHC3Q9NYG2 299 aa6.55□□□□□ -1.36
VPS35-203ENST00000562420 GPC6Q9Y625 555 aaPredicted RBP6.55□□□□□ -1.36
VPS35-203ENST00000562420 IGFBP4P22692 258 aa6.54□□□□□ -1.36
VPS35-203ENST00000562420 SLC9A9Q8IVB4 645 aa6.54□□□□□ -1.36
VPS35-203ENST00000562420 TSEN2Q8NCE0 465 aaKnown RBP6.54□□□□□ -1.36
VPS35-203ENST00000562420 TIMMDC1Q9NPL8 285 aa6.54□□□□□ -1.36
VPS35-203ENST00000562420 ITGA6P23229 1130 aa6.53□□□□□ -1.36
VPS35-203ENST00000562420 TNS4Q8IZW8 715 aa6.53□□□□□ -1.36
VPS35-203ENST00000562420 FOXO3O43524 673 aa6.52□□□□□ -1.37
VPS35-203ENST00000562420 F11P03951 625 aa6.52□□□□□ -1.37
VPS35-203ENST00000562420 RHOQP17081 205 aa6.52□□□□□ -1.37
VPS35-203ENST00000562420 WEE1P30291 646 aa6.52□□□□□ -1.37
VPS35-203ENST00000562420 GSK3AP49840 483 aa6.52□□□□□ -1.37
VPS35-203ENST00000562420 FAM69CQ0P6D2 419 aa6.52□□□□□ -1.37
VPS35-203ENST00000562420 NBPF1Q3BBV0 1214 aa6.52□□□□□ -1.37
VPS35-203ENST00000562420 CLP1Q92989 425 aaKnown RBP6.52□□□□□ -1.37
VPS35-203ENST00000562420 TSPAN10Q9H1Z9 355 aaPredicted RBP6.52□□□□□ -1.37
VPS35-203ENST00000562420 CRISPLD1Q9H336 500 aa6.52□□□□□ -1.37
VPS35-203ENST00000562420 USTQ9Y2C2 406 aa6.52□□□□□ -1.37
VPS35-203ENST00000562420 CHMP3Q9Y3E7 222 aa6.52□□□□□ -1.37
VPS35-203ENST00000562420 USP3Q9Y6I4 520 aa6.52□□□□□ -1.37
VPS35-203ENST00000562420 H7C1W4 665 aa6.51□□□□□ -1.37
VPS35-203ENST00000562420 EML1O00423 815 aa6.51□□□□□ -1.37
VPS35-203ENST00000562420 C21orf2O43822 256 aa6.51□□□□□ -1.37
VPS35-203ENST00000562420 NOS2P35228 1153 aa6.51□□□□□ -1.37
VPS35-203ENST00000562420 PLA2G4AP47712 749 aa6.51□□□□□ -1.37
VPS35-203ENST00000562420 KCNMA1Q12791 1236 aa6.51□□□□□ -1.37
VPS35-203ENST00000562420 CDCA8Q53HL2 280 aa6.51□□□□□ -1.37
VPS35-203ENST00000562420 TRIM22Q8IYM9 498 aa6.51□□□□□ -1.37
VPS35-203ENST00000562420 GPR161Q8N6U8 529 aaKnown RBP6.51□□□□□ -1.37
VPS35-203ENST00000562420 ZDHHC1Q8WTX9 485 aa6.51□□□□□ -1.37
VPS35-203ENST00000562420 STK32AQ8WU08 396 aa6.51□□□□□ -1.37
VPS35-203ENST00000562420 CABP1Q9NZU7 370 aa6.51□□□□□ -1.37
VPS35-203ENST00000562420 ATAD2Q6PL18 1390 aa6.5□□□□□ -1.37
VPS35-203ENST00000562420 SERTM1A2A2V5 107 aa6.5□□□□□ -1.37
VPS35-203ENST00000562420 ATP4AP20648 1035 aa6.5□□□□□ -1.37
VPS35-203ENST00000562420 KRT76Q01546 638 aa6.5□□□□□ -1.37
VPS35-203ENST00000562420 TMEM164Q5U3C3 297 aa6.5□□□□□ -1.37
VPS35-203ENST00000562420 C1orf53Q5VUE5 145 aa6.5□□□□□ -1.37
VPS35-203ENST00000562420 CNTNAP3BQ96NU0 1288 aa6.5□□□□□ -1.37
VPS35-203ENST00000562420 C2orf49Q9BVC5 232 aaPredicted RBP6.5□□□□□ -1.37
VPS35-203ENST00000562420 CNTNAP3Q9BZ76 1288 aa6.5□□□□□ -1.37
VPS35-203ENST00000562420 PPP1R12BO60237 982 aaPredicted RBP6.49□□□□□ -1.37
VPS35-203ENST00000562420 TATP17735 454 aaPredicted RBP6.49□□□□□ -1.37
VPS35-203ENST00000562420 PDE4CQ08493 712 aa6.49□□□□□ -1.37
VPS35-203ENST00000562420 L3MBTL2Q969R5 705 aa6.49□□□□□ -1.37
VPS35-203ENST00000562420 COL26A1Q96A83 441 aa6.49□□□□□ -1.37
VPS35-203ENST00000562420 HINFPQ9BQA5 517 aa6.49□□□□□ -1.37
VPS35-203ENST00000562420 TMEM88BA6NKF7 163 aa6.48□□□□□ -1.37
VPS35-203ENST00000562420 CSB-PGBD3P0DP91 1061 aa6.48□□□□□ -1.37
VPS35-203ENST00000562420 MSX1P28360 303 aa6.48□□□□□ -1.37
VPS35-203ENST00000562420 PHKA2P46019 1235 aa6.48□□□□□ -1.37
VPS35-203ENST00000562420 OCLNQ16625 522 aa6.48□□□□□ -1.37
VPS35-203ENST00000562420 NLRP8Q86W28 1048 aa6.48□□□□□ -1.37
VPS35-203ENST00000562420 TMEM151AQ8N4L1 468 aa6.48□□□□□ -1.37
VPS35-203ENST00000562420 SCG3Q8WXD2 468 aaKnown RBP6.48□□□□□ -1.37
VPS35-203ENST00000562420 ZNF837Q96EG3 531 aaPredicted RBP6.48□□□□□ -1.37
VPS35-203ENST00000562420 GDF11O95390 407 aa6.47□□□□□ -1.37
VPS35-203ENST00000562420 RASSF7Q02833 373 aa6.47□□□□□ -1.37
VPS35-203ENST00000562420 HIF1AQ16665 826 aa6.47□□□□□ -1.37
VPS35-203ENST00000562420 EFHC2Q5JST6 749 aa6.47□□□□□ -1.37
VPS35-203ENST00000562420 SAMD5Q5TGI4 173 aa6.47□□□□□ -1.37
VPS35-203ENST00000562420 SV2AQ7L0J3 742 aa6.47□□□□□ -1.37
VPS35-203ENST00000562420 PGBD3Q8N328 593 aa6.47□□□□□ -1.37
VPS35-203ENST00000562420 ADAMTS8Q9UP79 889 aa6.47□□□□□ -1.37
VPS35-203ENST00000562420 FIGNL1Q6PIW4 674 aa6.46□□□□□ -1.38
VPS35-203ENST00000562420 C7orf43Q8WVR3 580 aa6.46□□□□□ -1.38
VPS35-203ENST00000562420 GAS2L1Q99501 681 aaPredicted RBP6.46□□□□□ -1.38
VPS35-203ENST00000562420 ARID3AQ99856 593 aa6.46□□□□□ -1.38
VPS35-203ENST00000562420 COL25A1Q9BXS0 654 aaPredicted RBP6.46□□□□□ -1.38
VPS35-203ENST00000562420 NUCKS1Q9H1E3 243 aaKnown RBP6.46□□□□□ -1.38
VPS35-203ENST00000562420 UTP3Q9NQZ2 479 aaKnown RBP eCLIP6.46□□□□□ -1.38
VPS35-203ENST00000562420 CUEDC1Q9NWM3 386 aaPredicted RBP6.46□□□□□ -1.38
VPS35-203ENST00000562420 CXXC1Q9P0U4 656 aaPredicted RBP6.46□□□□□ -1.38
VPS35-203ENST00000562420 ZNF232Q9UNY5 417 aa6.46□□□□□ -1.38
VPS35-203ENST00000562420 TXLNAP40222 546 aa6.45□□□□□ -1.38
VPS35-203ENST00000562420 UBAP2LQ14157 1087 aaKnown RBP6.45□□□□□ -1.38
VPS35-203ENST00000562420 DBN1Q16643 649 aa6.45□□□□□ -1.38
VPS35-203ENST00000562420 RTN1Q16799 776 aa6.45□□□□□ -1.38
VPS35-203ENST00000562420 TBCELQ5QJ74 424 aa6.45□□□□□ -1.38
VPS35-203ENST00000562420 RIPOR1Q6ZS17 1223 aa6.45□□□□□ -1.38
VPS35-203ENST00000562420 MYO19Q96H55 970 aa6.45□□□□□ -1.38
VPS35-203ENST00000562420 PTCD1O75127 700 aaKnown RBP6.44□□□□□ -1.38
VPS35-203ENST00000562420 THBS1P07996 1170 aa6.44□□□□□ -1.38
VPS35-203ENST00000562420 RNFT1Q5M7Z0 435 aa6.44□□□□□ -1.38
VPS35-203ENST00000562420 B4GALNT3Q6L9W6 998 aa6.44□□□□□ -1.38
VPS35-203ENST00000562420 FOXR1Q6PIV2 292 aa6.44□□□□□ -1.38
VPS35-203ENST00000562420 AIDAQ96BJ3 306 aa6.44□□□□□ -1.38
VPS35-203ENST00000562420 ZIC5Q96T25 663 aa6.44□□□□□ -1.38
VPS35-203ENST00000562420 CFHR5Q9BXR6 569 aa6.44□□□□□ -1.38
VPS35-203ENST00000562420 GPAMQ9HCL2 828 aa6.44□□□□□ -1.38
VPS35-203ENST00000562420 FAM157BP0CG42 384 aa6.43□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms