RNA–Protein interactions for RNA: ENST00000561976.5

VPS9D1-202, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,791 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-202ENST00000561976 PLCB2Q00722 1185 aa16.82■□□□□ 0.28
VPS9D1-202ENST00000561976 RIMS1Q86UR5 1692 aaKnown RBP16.82■□□□□ 0.28
VPS9D1-202ENST00000561976 USP31Q70CQ4 1352 aa16.81■□□□□ 0.28
VPS9D1-202ENST00000561976 RPAP1Q9BWH6 1393 aaPredicted RBP16.81■□□□□ 0.28
VPS9D1-202ENST00000561976 EPB41L2O43491 1005 aaKnown RBP16.81■□□□□ 0.28
VPS9D1-202ENST00000561976 FAM69CQ0P6D2 419 aa16.81■□□□□ 0.28
VPS9D1-202ENST00000561976 SNX14Q9Y5W7 946 aa16.81■□□□□ 0.28
VPS9D1-202ENST00000561976 RGPD1P0DJD0 1748 aa16.81■□□□□ 0.28
VPS9D1-202ENST00000561976 GNAT3A8MTJ3 354 aa16.81■□□□□ 0.28
VPS9D1-202ENST00000561976 FIBPO43427 364 aa16.81■□□□□ 0.28
VPS9D1-202ENST00000561976 LETM1O95202 739 aaPredicted RBP16.81■□□□□ 0.28
VPS9D1-202ENST00000561976 AK2P54819 239 aa16.81■□□□□ 0.28
VPS9D1-202ENST00000561976 SMC3Q9UQE7 1217 aa16.81■□□□□ 0.28
VPS9D1-202ENST00000561976 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.81■□□□□ 0.28
VPS9D1-202ENST00000561976 FLT4P35916 1363 aa16.8■□□□□ 0.28
VPS9D1-202ENST00000561976 STX6O43752 255 aa16.8■□□□□ 0.28
VPS9D1-202ENST00000561976 PPP1R42Q7Z4L9 355 aa16.8■□□□□ 0.28
VPS9D1-202ENST00000561976 TMEM87AQ8NBN3 555 aa16.8■□□□□ 0.28
VPS9D1-202ENST00000561976 RAD50Q92878 1312 aa16.8■□□□□ 0.28
VPS9D1-202ENST00000561976 SGSM2O43147 1006 aa16.8■□□□□ 0.28
VPS9D1-202ENST00000561976 RAB11FIP3O75154 756 aa16.8■□□□□ 0.28
VPS9D1-202ENST00000561976 UBE2HP62256 183 aa16.8■□□□□ 0.28
VPS9D1-202ENST00000561976 SSH3Q8TE77 659 aa16.8■□□□□ 0.28
VPS9D1-202ENST00000561976 TTC12Q9H892 705 aaPredicted RBP16.8■□□□□ 0.28
VPS9D1-202ENST00000561976 LIMCH1Q9UPQ0 1083 aa16.8■□□□□ 0.28
VPS9D1-202ENST00000561976 TUBGCP6Q96RT7 1819 aa16.8■□□□□ 0.28
VPS9D1-202ENST00000561976 SYT1P21579 422 aa16.79■□□□□ 0.28
VPS9D1-202ENST00000561976 CNTROBQ8N137 903 aa16.79■□□□□ 0.28
VPS9D1-202ENST00000561976 RHPN1Q8TCX5 695 aa16.79■□□□□ 0.28
VPS9D1-202ENST00000561976 SBNO1A3KN83 1393 aa16.79■□□□□ 0.28
VPS9D1-202ENST00000561976 NOLC1Q14978 699 aaKnown RBP eCLIP16.79■□□□□ 0.28
VPS9D1-202ENST00000561976 CWC27Q6UX04 472 aaKnown RBP16.79■□□□□ 0.28
VPS9D1-202ENST00000561976 PIBF1Q8WXW3 757 aa16.79■□□□□ 0.28
VPS9D1-202ENST00000561976 ATP6V1DQ9Y5K8 247 aa16.79■□□□□ 0.28
VPS9D1-202ENST00000561976 HTATSF1O43719 755 aaKnown RBP16.78■□□□□ 0.28
VPS9D1-202ENST00000561976 RASEFQ8IZ41 740 aa16.78■□□□□ 0.28
VPS9D1-202ENST00000561976 TCHHQ07283 1943 aa16.78■□□□□ 0.28
VPS9D1-202ENST00000561976 SRGAP3O43295 1099 aa16.78■□□□□ 0.28
VPS9D1-202ENST00000561976 HDGFL1Q5TGJ6 251 aa16.78■□□□□ 0.28
VPS9D1-202ENST00000561976 PI4K2BQ8TCG2 481 aa16.78■□□□□ 0.28
VPS9D1-202ENST00000561976 PHAXQ9H814 394 aaKnown RBP16.78■□□□□ 0.28
VPS9D1-202ENST00000561976 SPG7Q9UQ90 795 aa16.78■□□□□ 0.28
VPS9D1-202ENST00000561976 IGSF1Q8N6C5 1336 aa16.78■□□□□ 0.28
VPS9D1-202ENST00000561976 KDRP35968 1356 aa16.78■□□□□ 0.28
VPS9D1-202ENST00000561976 F13A1P00488 732 aa16.77■□□□□ 0.28
VPS9D1-202ENST00000561976 RUFY3Q7L099 469 aa16.77■□□□□ 0.28
VPS9D1-202ENST00000561976 MYRIPQ8NFW9 859 aa16.77■□□□□ 0.28
VPS9D1-202ENST00000561976 TTC14Q96N46 770 aa16.77■□□□□ 0.28
VPS9D1-202ENST00000561976 AGLP35573 1532 aa16.77■□□□□ 0.28
VPS9D1-202ENST00000561976 C17orf53Q8N3J3 647 aaPredicted RBP16.77■□□□□ 0.28
VPS9D1-202ENST00000561976 NGDNQ8NEJ9 315 aaKnown RBP16.77■□□□□ 0.28
VPS9D1-202ENST00000561976 KIF1BPQ96EK5 621 aa16.77■□□□□ 0.28
VPS9D1-202ENST00000561976 LSG1Q9H089 658 aaKnown RBP16.77■□□□□ 0.28
VPS9D1-202ENST00000561976 CPA1P15085 419 aa16.77■□□□□ 0.27
VPS9D1-202ENST00000561976 CASTP20810 708 aaKnown RBP16.77■□□□□ 0.27
VPS9D1-202ENST00000561976 TAF7Q15545 349 aaPredicted RBP16.76■□□□□ 0.27
VPS9D1-202ENST00000561976 GIMAP6Q6P9H5 292 aa16.76■□□□□ 0.27
VPS9D1-202ENST00000561976 CEP170BQ9Y4F5 1589 aaPredicted RBP16.76■□□□□ 0.27
VPS9D1-202ENST00000561976 DTNBO60941 627 aa16.76■□□□□ 0.27
VPS9D1-202ENST00000561976 OS9Q13438 667 aaPredicted RBP16.76■□□□□ 0.27
VPS9D1-202ENST00000561976 TTC21AQ8NDW8 1320 aa16.76■□□□□ 0.27
VPS9D1-202ENST00000561976 XRN1Q8IZH2 1706 aaKnown RBP16.75■□□□□ 0.27
VPS9D1-202ENST00000561976 KDM4AO75164 1064 aa16.75■□□□□ 0.27
VPS9D1-202ENST00000561976 EIF2S2P20042 333 aaKnown RBP16.75■□□□□ 0.27
VPS9D1-202ENST00000561976 CCDC83Q8IWF9 413 aa16.75■□□□□ 0.27
VPS9D1-202ENST00000561976 IL17REQ8NFR9 667 aa16.75■□□□□ 0.27
VPS9D1-202ENST00000561976 PRIMPOLQ96LW4 560 aa16.75■□□□□ 0.27
VPS9D1-202ENST00000561976 HMGN5P82970 282 aaKnown RBP16.75■□□□□ 0.27
VPS9D1-202ENST00000561976 LTV1Q96GA3 475 aaPredicted RBP16.75■□□□□ 0.27
VPS9D1-202ENST00000561976 DIAPH3Q9NSV4 1193 aa16.75■□□□□ 0.27
VPS9D1-202ENST00000561976 POLA2Q14181 598 aa16.74■□□□□ 0.27
VPS9D1-202ENST00000561976 JARID2Q92833 1246 aaPredicted RBP16.74■□□□□ 0.27
VPS9D1-202ENST00000561976 NALCNQ8IZF0 1738 aa16.74■□□□□ 0.27
VPS9D1-202ENST00000561976 GJB2P29033 226 aa16.74■□□□□ 0.27
VPS9D1-202ENST00000561976 DNM1Q05193 864 aaKnown RBP16.74■□□□□ 0.27
VPS9D1-202ENST00000561976 FAM208AQ9UK61 1670 aaKnown RBP16.74■□□□□ 0.27
VPS9D1-202ENST00000561976 LARGE1O95461 756 aa16.73■□□□□ 0.27
VPS9D1-202ENST00000561976 TSC1Q92574 1164 aa16.73■□□□□ 0.27
VPS9D1-202ENST00000561976 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.73■□□□□ 0.27
VPS9D1-202ENST00000561976 VPS37CA5D8V6 355 aaPredicted RBP16.73■□□□□ 0.27
VPS9D1-202ENST00000561976 NBPF7P0C2Y1 421 aaPredicted RBP16.73■□□□□ 0.27
VPS9D1-202ENST00000561976 NLRP6P59044 892 aa16.72■□□□□ 0.27
VPS9D1-202ENST00000561976 JAKMIP1Q96N16 626 aaKnown RBP16.72■□□□□ 0.27
VPS9D1-202ENST00000561976 PDRG1Q9NUG6 133 aa16.72■□□□□ 0.27
VPS9D1-202ENST00000561976 MAP3K5Q99683 1374 aa16.72■□□□□ 0.27
VPS9D1-202ENST00000561976 PXDNLA1KZ92 1463 aa16.72■□□□□ 0.27
VPS9D1-202ENST00000561976 NUTM2GQ5VZR2 741 aa16.72■□□□□ 0.27
VPS9D1-202ENST00000561976 RUFY2Q8WXA3 655 aa16.72■□□□□ 0.27
VPS9D1-202ENST00000561976 DIP2BQ9P265 1576 aa16.72■□□□□ 0.27
VPS9D1-202ENST00000561976 TMEM2Q9UHN6 1383 aa16.72■□□□□ 0.27
VPS9D1-202ENST00000561976 SLC26A8Q96RN1 970 aa16.72■□□□□ 0.27
VPS9D1-202ENST00000561976 HYPKQ9NX55 129 aa16.72■□□□□ 0.27
VPS9D1-202ENST00000561976 FMN2Q9NZ56 1722 aa16.72■□□□□ 0.27
VPS9D1-202ENST00000561976 HSP90AB4PQ58FF6 505 aa16.71■□□□□ 0.27
VPS9D1-202ENST00000561976 PRPF40BQ6NWY9 871 aaKnown RBP16.71■□□□□ 0.27
VPS9D1-202ENST00000561976 GLRX3O76003 335 aaKnown RBP16.71■□□□□ 0.26
VPS9D1-202ENST00000561976 MTMR6Q9Y217 621 aa16.71■□□□□ 0.26
VPS9D1-202ENST00000561976 TOPAZ1Q8N9V7 1692 aa16.7■□□□□ 0.26
VPS9D1-202ENST00000561976 SPC24Q8NBT2 197 aa16.7■□□□□ 0.26
VPS9D1-202ENST00000561976 DDX54Q8TDD1 881 aaKnown RBP16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms