RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 RGPD5Q99666 1765 aa9.33□□□□□ -0.92
VPS39-204ENST00000561818 CEP85Q6P2H3 762 aa9.33□□□□□ -0.92
VPS39-204ENST00000561818 MPRIPQ6WCQ1 1025 aa9.33□□□□□ -0.92
VPS39-204ENST00000561818 ERC1Q8IUD2 1116 aa9.33□□□□□ -0.92
VPS39-204ENST00000561818 VSIG10Q8N0Z9 540 aa9.33□□□□□ -0.92
VPS39-204ENST00000561818 COL15A1P39059 1388 aa9.33□□□□□ -0.92
VPS39-204ENST00000561818 LAMB4A4D0S4 1761 aa9.32□□□□□ -0.92
VPS39-204ENST00000561818 KDM6AO15550 1401 aaPredicted RBP9.32□□□□□ -0.92
VPS39-204ENST00000561818 EPB41L2O43491 1005 aaKnown RBP9.32□□□□□ -0.92
VPS39-204ENST00000561818 ABCB7O75027 752 aa9.32□□□□□ -0.92
VPS39-204ENST00000561818 C8orf34Q49A92 452 aa9.32□□□□□ -0.92
VPS39-204ENST00000561818 LARP1Q6PKG0 1096 aaKnown RBP9.32□□□□□ -0.92
VPS39-204ENST00000561818 SLC4A10Q6U841 1118 aa9.32□□□□□ -0.92
VPS39-204ENST00000561818 KSR2Q6VAB6 950 aa9.32□□□□□ -0.92
VPS39-204ENST00000561818 LINS1Q8NG48 757 aa9.32□□□□□ -0.92
VPS39-204ENST00000561818 NWD2Q9ULI1 1742 aa9.31□□□□□ -0.92
VPS39-204ENST00000561818 ZBTB22O15209 634 aa9.31□□□□□ -0.92
VPS39-204ENST00000561818 ANKRD45Q5TZF3 282 aa9.31□□□□□ -0.92
VPS39-204ENST00000561818 LGR6Q9HBX8 967 aa9.31□□□□□ -0.92
VPS39-204ENST00000561818 MIS18AQ9NYP9 233 aa9.31□□□□□ -0.92
VPS39-204ENST00000561818 MTX1Q13505 466 aa9.3□□□□□ -0.92
VPS39-204ENST00000561818 CHRNA2Q15822 529 aa9.3□□□□□ -0.92
VPS39-204ENST00000561818 CABLES1Q8TDN4 633 aa9.3□□□□□ -0.92
VPS39-204ENST00000561818 GPATCH3Q96I76 525 aa9.3□□□□□ -0.92
VPS39-204ENST00000561818 OSBPL3Q9H4L5 887 aa9.3□□□□□ -0.92
VPS39-204ENST00000561818 CHPF2Q9P2E5 772 aa9.3□□□□□ -0.92
VPS39-204ENST00000561818 TNNQ9UQP3 1299 aa9.3□□□□□ -0.92
VPS39-204ENST00000561818 NOP58Q9Y2X3 529 aaKnown RBP9.3□□□□□ -0.92
VPS39-204ENST00000561818 TNS2Q63HR2 1409 aa9.3□□□□□ -0.92
VPS39-204ENST00000561818 PHLPP1O60346 1717 aa9.29□□□□□ -0.92
VPS39-204ENST00000561818 CYP27B1O15528 508 aa9.29□□□□□ -0.92
VPS39-204ENST00000561818 EIF2S2P20042 333 aaKnown RBP9.29□□□□□ -0.92
VPS39-204ENST00000561818 ATP8B2P98198 1209 aa9.29□□□□□ -0.92
VPS39-204ENST00000561818 KRT24Q2M2I5 525 aa9.29□□□□□ -0.92
VPS39-204ENST00000561818 TICAM2Q86XR7 235 aa9.29□□□□□ -0.92
VPS39-204ENST00000561818 DDX17Q92841 729 aaKnown RBP9.29□□□□□ -0.92
VPS39-204ENST00000561818 LRRCC1Q9C099 1032 aa9.29□□□□□ -0.92
VPS39-204ENST00000561818 PAPPAQ13219 1627 aa9.29□□□□□ -0.92
VPS39-204ENST00000561818 DISP2A7MBM2 1401 aa9.29□□□□□ -0.92
VPS39-204ENST00000561818 UTYO14607 1347 aa9.29□□□□□ -0.92
VPS39-204ENST00000561818 COL16A1Q07092 1604 aaPredicted RBP9.28□□□□□ -0.92
VPS39-204ENST00000561818 PI4KAP2A4QPH2 592 aa9.28□□□□□ -0.92
VPS39-204ENST00000561818 CDC45O75419 566 aa9.28□□□□□ -0.92
VPS39-204ENST00000561818 STARD3NLO95772 234 aa9.28□□□□□ -0.92
VPS39-204ENST00000561818 HSP90B1P14625 803 aaKnown RBP9.28□□□□□ -0.92
VPS39-204ENST00000561818 BEND3Q5T5X7 828 aa9.28□□□□□ -0.92
VPS39-204ENST00000561818 PI4KAP1Q8N8J0 262 aa9.28□□□□□ -0.92
VPS39-204ENST00000561818 NFATC2IPQ8NCF5 419 aa9.28□□□□□ -0.92
VPS39-204ENST00000561818 KIF1BPQ96EK5 621 aa9.28□□□□□ -0.92
VPS39-204ENST00000561818 MEIS3Q99687 375 aa9.28□□□□□ -0.92
VPS39-204ENST00000561818 TMOD3Q9NYL9 352 aa9.28□□□□□ -0.92
VPS39-204ENST00000561818 C9orf78Q9NZ63 289 aaPredicted RBP9.28□□□□□ -0.92
VPS39-204ENST00000561818 SPATA31A6Q5VVP1 1343 aa9.28□□□□□ -0.92
VPS39-204ENST00000561818 UBR2Q8IWV8 1755 aa9.27□□□□□ -0.92
VPS39-204ENST00000561818 JCADQ9P266 1359 aa9.27□□□□□ -0.93
VPS39-204ENST00000561818 EXOC5O00471 708 aa9.27□□□□□ -0.93
VPS39-204ENST00000561818 REC8O95072 547 aa9.27□□□□□ -0.93
VPS39-204ENST00000561818 HSP90AB3PQ58FF7 597 aa9.27□□□□□ -0.93
VPS39-204ENST00000561818 BARGINQ6ZT62 677 aa9.27□□□□□ -0.93
VPS39-204ENST00000561818 RIC3Q7Z5B4 369 aa9.27□□□□□ -0.93
VPS39-204ENST00000561818 NPM2Q86SE8 214 aaKnown RBP9.27□□□□□ -0.93
VPS39-204ENST00000561818 SSH3Q8TE77 659 aa9.27□□□□□ -0.93
VPS39-204ENST00000561818 LNPKQ9C0E8 428 aa9.27□□□□□ -0.93
VPS39-204ENST00000561818 BTG4Q9NY30 223 aa9.27□□□□□ -0.93
VPS39-204ENST00000561818 GRM8O00222 908 aa9.26□□□□□ -0.93
VPS39-204ENST00000561818 ERC2O15083 957 aa9.26□□□□□ -0.93
VPS39-204ENST00000561818 RGL2O15211 777 aa9.26□□□□□ -0.93
VPS39-204ENST00000561818 G2E3Q7L622 706 aa9.26□□□□□ -0.93
VPS39-204ENST00000561818 SIRT2Q8IXJ6 389 aa9.26□□□□□ -0.93
VPS39-204ENST00000561818 PLBD2Q8NHP8 589 aa9.26□□□□□ -0.93
VPS39-204ENST00000561818 TBC1D32Q96NH3 1257 aa9.26□□□□□ -0.93
VPS39-204ENST00000561818 METTL22Q9BUU2 404 aaPredicted RBP9.26□□□□□ -0.93
VPS39-204ENST00000561818 USP44Q9H0E7 712 aa9.26□□□□□ -0.93
VPS39-204ENST00000561818 STRN4Q9NRL3 753 aa9.26□□□□□ -0.93
VPS39-204ENST00000561818 ADCY9O60503 1353 aa9.25□□□□□ -0.93
VPS39-204ENST00000561818 F6X3S4 739 aa9.25□□□□□ -0.93
VPS39-204ENST00000561818 POLA2Q14181 598 aa9.25□□□□□ -0.93
VPS39-204ENST00000561818 ANKRD13DQ6ZTN6 518 aa9.25□□□□□ -0.93
VPS39-204ENST00000561818 ZNF496Q96IT1 587 aaPredicted RBP9.25□□□□□ -0.93
VPS39-204ENST00000561818 USP35Q9P2H5 1018 aa9.25□□□□□ -0.93
VPS39-204ENST00000561818 FBXO3Q9UK99 471 aa9.25□□□□□ -0.93
VPS39-204ENST00000561818 MAP3K2Q9Y2U5 619 aa9.25□□□□□ -0.93
VPS39-204ENST00000561818 WNK3Q9BYP7 1800 aa9.25□□□□□ -0.93
VPS39-204ENST00000561818 TTC41PQ6P2S7 1318 aa9.25□□□□□ -0.93
VPS39-204ENST00000561818 PLEKHG5O94827 1062 aa9.24□□□□□ -0.93
VPS39-204ENST00000561818 MCCP23508 829 aa9.24□□□□□ -0.93
VPS39-204ENST00000561818 TTC22Q5TAA0 569 aa9.24□□□□□ -0.93
VPS39-204ENST00000561818 CLASRPQ8N2M8 674 aaKnown RBP9.24□□□□□ -0.93
VPS39-204ENST00000561818 SMARCC1Q92922 1105 aaPredicted RBP9.24□□□□□ -0.93
VPS39-204ENST00000561818 C1orf115Q9H7X2 142 aa9.24□□□□□ -0.93
VPS39-204ENST00000561818 STAP2Q9UGK3 403 aa9.24□□□□□ -0.93
VPS39-204ENST00000561818 ATF5Q9Y2D1 282 aaPredicted RBP9.24□□□□□ -0.93
VPS39-204ENST00000561818 SLIT2O94813 1529 aa9.23□□□□□ -0.93
VPS39-204ENST00000561818 KCPQ6ZWJ8 1503 aa9.23□□□□□ -0.93
VPS39-204ENST00000561818 HIP1O00291 1037 aa9.23□□□□□ -0.93
VPS39-204ENST00000561818 SRGAP3O43295 1099 aa9.23□□□□□ -0.93
VPS39-204ENST00000561818 RBM25P49756 843 aaKnown RBP9.23□□□□□ -0.93
VPS39-204ENST00000561818 KIF6Q6ZMV9 814 aa9.23□□□□□ -0.93
VPS39-204ENST00000561818 CCDC191Q8NCU4 936 aa9.23□□□□□ -0.93
VPS39-204ENST00000561818 PHAXQ9H814 394 aaKnown RBP9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms